data_4Q7H
#
_model_server_result.job_id            cYTdtxHlMfChqYpLLApH0Q 
_model_server_result.datetime_utc      '2024-11-29 16:07:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q7h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":902}' 
#
_entry.id    4Q7H 
#
_exptl.entry_id    4Q7H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Q7H 
_cell.length_a            80.943 
_cell.length_b            142.765 
_cell.length_c            199.501 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q7H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 241 A CYS 341 1_555 A SG CYS 250 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 241 B CYS 341 1_555 B SG CYS 250 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 C SG CYS 241 C CYS 341 1_555 C SG CYS 250 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 D SG CYS 241 D CYS 341 1_555 D SG CYS 250 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A NE2 HIS 67 A HIS 167 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc2 A NE2 HIS 106 A HIS 206 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc3 A OD2 ASP 107 A ASP 207 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc4 A OD1 ASP 211 A ASP 311 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 B NE2 HIS 67 B HIS 167 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc6 B NE2 HIS 106 B HIS 206 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc7 B OD2 ASP 107 B ASP 207 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc8 B OD1 ASP 211 B ASP 311 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc9 C NE2 HIS 67 C HIS 167 1_555 I ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc10 C NE2 HIS 106 C HIS 206 1_555 I ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc11 C OD2 ASP 107 C ASP 207 1_555 I ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc12 C OD1 ASP 211 C ASP 311 1_555 I ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc13 D NE2 HIS 67 D HIS 167 1_555 K ZN ZN . D ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc14 D NE2 HIS 106 D HIS 206 1_555 K ZN ZN . D ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc15 D OD2 ASP 107 D ASP 207 1_555 K ZN ZN . D ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
metalc ? metalc16 D OD1 ASP 211 D ASP 311 1_555 K ZN ZN . D ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     4Q7H 
_atom_sites.fract_transf_matrix[1][1]    0.012354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 901 901 ZN ZN . 
F 3 GTP A 1 902 303 GTP GTP . 
G 2 ZN B 1 901 901 ZN ZN . 
H 3 GTP B 1 902 302 GTP GTP . 
I 2 ZN C 1 901 901 ZN ZN . 
J 3 GTP C 1 902 304 GTP GTP . 
K 2 ZN D 1 901 901 ZN ZN . 
L 4 HOH A 1 1001 2 HOH HOH . 
L 4 HOH A 2 1002 4 HOH HOH . 
L 4 HOH A 3 1003 5 HOH HOH . 
L 4 HOH A 4 1004 6 HOH HOH . 
L 4 HOH A 5 1005 7 HOH HOH . 
L 4 HOH A 6 1006 8 HOH HOH . 
L 4 HOH A 7 1007 9 HOH HOH . 
L 4 HOH A 8 1008 11 HOH HOH . 
L 4 HOH A 9 1009 12 HOH HOH . 
L 4 HOH A 10 1010 13 HOH HOH . 
L 4 HOH A 11 1011 14 HOH HOH . 
L 4 HOH A 12 1012 26 HOH HOH . 
L 4 HOH A 13 1013 27 HOH HOH . 
L 4 HOH A 14 1014 28 HOH HOH . 
L 4 HOH A 15 1015 30 HOH HOH . 
L 4 HOH A 16 1016 33 HOH HOH . 
L 4 HOH A 17 1017 35 HOH HOH . 
L 4 HOH A 18 1018 53 HOH HOH . 
M 4 HOH B 1 1001 1 HOH HOH . 
M 4 HOH B 2 1002 3 HOH HOH . 
M 4 HOH B 3 1003 16 HOH HOH . 
M 4 HOH B 4 1004 17 HOH HOH . 
M 4 HOH B 5 1005 18 HOH HOH . 
M 4 HOH B 6 1006 19 HOH HOH . 
M 4 HOH B 7 1007 21 HOH HOH . 
M 4 HOH B 8 1008 22 HOH HOH . 
M 4 HOH B 9 1009 23 HOH HOH . 
M 4 HOH B 10 1010 24 HOH HOH . 
M 4 HOH B 11 1011 25 HOH HOH . 
M 4 HOH B 12 1012 29 HOH HOH . 
M 4 HOH B 13 1013 32 HOH HOH . 
M 4 HOH B 14 1014 36 HOH HOH . 
M 4 HOH B 15 1015 37 HOH HOH . 
M 4 HOH B 16 1016 54 HOH HOH . 
M 4 HOH B 17 1017 55 HOH HOH . 
M 4 HOH B 18 1018 63 HOH HOH . 
N 4 HOH C 1 1001 44 HOH HOH . 
N 4 HOH C 2 1002 46 HOH HOH . 
N 4 HOH C 3 1003 49 HOH HOH . 
N 4 HOH C 4 1004 50 HOH HOH . 
N 4 HOH C 5 1005 51 HOH HOH . 
N 4 HOH C 6 1006 52 HOH HOH . 
N 4 HOH C 7 1007 59 HOH HOH . 
O 4 HOH D 1 1001 39 HOH HOH . 
O 4 HOH D 2 1002 40 HOH HOH . 
O 4 HOH D 3 1003 41 HOH HOH . 
O 4 HOH D 4 1004 42 HOH HOH . 
O 4 HOH D 5 1005 43 HOH HOH . 
O 4 HOH D 6 1006 47 HOH HOH . 
O 4 HOH D 7 1007 48 HOH HOH . 
O 4 HOH D 8 1008 56 HOH HOH . 
O 4 HOH D 9 1009 57 HOH HOH . 
O 4 HOH D 10 1010 58 HOH HOH . 
O 4 HOH D 11 1011 60 HOH HOH . 
O 4 HOH D 12 1012 62 HOH HOH . 
O 4 HOH D 13 1013 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . H 3 -12.193 -8.628 -12.035 1 103.69 ? PG GTP 902 B 1 
HETATM 2 O O1G GTP . . . H 3 -12.933 -9.903 -12.386 1 101.48 ? O1G GTP 902 B 1 
HETATM 3 O O2G GTP . . . H 3 -11.625 -8.786 -10.615 1 74.01 ? O2G GTP 902 B 1 
HETATM 4 O O3G GTP . . . H 3 -13.171 -7.453 -12.096 1 74.69 ? O3G GTP 902 B 1 
HETATM 5 O O3B GTP . . . H 3 -10.948 -8.381 -13.041 1 95.13 ? O3B GTP 902 B 1 
HETATM 6 P PB GTP . . . H 3 -10.808 -8.617 -14.647 1 119.34 ? PB GTP 902 B 1 
HETATM 7 O O1B GTP . . . H 3 -10.056 -9.917 -14.924 1 115.36 ? O1B GTP 902 B 1 
HETATM 8 O O2B GTP . . . H 3 -12.182 -8.726 -15.297 1 101.76 ? O2B GTP 902 B 1 
HETATM 9 O O3A GTP . . . H 3 -10.002 -7.361 -15.278 1 94.68 ? O3A GTP 902 B 1 
HETATM 10 P PA GTP . . . H 3 -8.489 -7.216 -15.763 1 94.92 ? PA GTP 902 B 1 
HETATM 11 O O1A GTP . . . H 3 -7.782 -6.097 -15.022 1 76.39 ? O1A GTP 902 B 1 
HETATM 12 O O2A GTP . . . H 3 -7.72 -8.508 -15.477 1 95.73 ? O2A GTP 902 B 1 
HETATM 13 O O5' GTP . . . H 3 -8.457 -6.852 -17.339 1 82.3 ? O5' GTP 902 B 1 
HETATM 14 C C5' GTP . . . H 3 -8.655 -5.523 -17.79 1 68.2 ? C5' GTP 902 B 1 
HETATM 15 C C4' GTP . . . H 3 -7.989 -5.252 -19.152 1 72.09 ? C4' GTP 902 B 1 
HETATM 16 O O4' GTP . . . H 3 -6.716 -4.295 -18.97 1 68.08 ? O4' GTP 902 B 1 
HETATM 17 C C3' GTP . . . H 3 -7.593 -6.372 -19.699 1 79.17 ? C3' GTP 902 B 1 
HETATM 18 O O3' GTP . . . H 3 -8.485 -6.775 -20.851 1 77.45 ? O3' GTP 902 B 1 
HETATM 19 C C2' GTP . . . H 3 -6.125 -6.156 -20.152 1 71.16 ? C2' GTP 902 B 1 
HETATM 20 O O2' GTP . . . H 3 -6.106 -6.015 -21.505 1 68.85 ? O2' GTP 902 B 1 
HETATM 21 C C1' GTP . . . H 3 -5.647 -4.825 -19.53 1 64.92 ? C1' GTP 902 B 1 
HETATM 22 N N9 GTP . . . H 3 -4.526 -4.769 -18.569 1 64.32 ? N9 GTP 902 B 1 
HETATM 23 C C8 GTP . . . H 3 -3.741 -3.661 -18.564 1 56.2 ? C8 GTP 902 B 1 
HETATM 24 N N7 GTP . . . H 3 -2.819 -3.8 -17.596 1 56.79 ? N7 GTP 902 B 1 
HETATM 25 C C5 GTP . . . H 3 -3.017 -4.971 -16.988 1 56.63 ? C5 GTP 902 B 1 
HETATM 26 C C6 GTP . . . H 3 -2.236 -5.585 -15.838 1 56.1 ? C6 GTP 902 B 1 
HETATM 27 O O6 GTP . . . H 3 -1.296 -4.974 -15.307 1 48.54 ? O6 GTP 902 B 1 
HETATM 28 N N1 GTP . . . H 3 -2.643 -6.837 -15.365 1 61.08 ? N1 GTP 902 B 1 
HETATM 29 C C2 GTP . . . H 3 -3.74 -7.516 -15.954 1 65.17 ? C2 GTP 902 B 1 
HETATM 30 N N2 GTP . . . H 3 -4.097 -8.803 -15.422 1 59.58 ? N2 GTP 902 B 1 
HETATM 31 N N3 GTP . . . H 3 -4.463 -6.899 -17.062 1 69.31 ? N3 GTP 902 B 1 
HETATM 32 C C4 GTP . . . H 3 -4.088 -5.589 -17.576 1 60.77 ? C4 GTP 902 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#