data_4Q7P # _model_server_result.job_id SNPbcwjoLv74YhYusxmVRg _model_server_result.datetime_utc '2024-11-16 10:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4Q7P # _exptl.entry_id 4Q7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 141.191 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-hydroxy-3-methylpyridine-2(1H)-thione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.36 _cell.angle_gamma 90 _cell.entry_id 4Q7P _cell.length_a 42.189 _cell.length_b 41.32 _cell.length_c 71.974 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 A O VAL 134 A VAL 135 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc5 A O GLN 136 A GLN 137 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc6 A SG CYS 205 A CYS 206 1_555 D HG MBO . A MBO 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 C S1 3MH . A 3MH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 C O1 3MH . A 3MH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'C6 H7 N O S' _chem_comp.formula_weight 141.191 _chem_comp.id 3MH _chem_comp.mon_nstd_flag . _chem_comp.name 1-hydroxy-3-methylpyridine-2(1H)-thione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 3MH doub 1 n n C5 N1 3MH sing 2 n n C4 C3 3MH sing 3 n n O1 N1 3MH sing 4 n n N1 C1 3MH sing 5 n n C3 C2 3MH doub 6 n n C1 C2 3MH sing 7 n n C1 S1 3MH doub 8 n n C2 C6 3MH sing 9 n n C6 H1 3MH sing 10 n n C6 H2 3MH sing 11 n n C6 H3 3MH sing 12 n n C3 H4 3MH sing 13 n n C4 H5 3MH sing 14 n n C5 H6 3MH sing 15 n n O1 H7 3MH sing 16 n n # _atom_sites.entry_id 4Q7P _atom_sites.fract_transf_matrix[1][1] 0.023703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006067 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 3MH A 1 302 263 3MH 3MH . D 4 MBO A 1 303 263 MBO MBO . E 5 DMS A 1 304 264 DMS DMS . F 6 HOH A 1 401 265 HOH HOH . F 6 HOH A 2 402 266 HOH HOH . F 6 HOH A 3 403 267 HOH HOH . F 6 HOH A 4 404 268 HOH HOH . F 6 HOH A 5 405 269 HOH HOH . F 6 HOH A 6 406 270 HOH HOH . F 6 HOH A 7 407 271 HOH HOH . F 6 HOH A 8 408 272 HOH HOH . F 6 HOH A 9 409 273 HOH HOH . F 6 HOH A 10 410 274 HOH HOH . F 6 HOH A 11 411 275 HOH HOH . F 6 HOH A 12 412 276 HOH HOH . F 6 HOH A 13 413 277 HOH HOH . F 6 HOH A 14 414 278 HOH HOH . F 6 HOH A 15 415 279 HOH HOH . F 6 HOH A 16 416 280 HOH HOH . F 6 HOH A 17 417 281 HOH HOH . F 6 HOH A 18 418 282 HOH HOH . F 6 HOH A 19 419 283 HOH HOH . F 6 HOH A 20 420 284 HOH HOH . F 6 HOH A 21 421 285 HOH HOH . F 6 HOH A 22 422 286 HOH HOH . F 6 HOH A 23 423 287 HOH HOH . F 6 HOH A 24 424 288 HOH HOH . F 6 HOH A 25 425 289 HOH HOH . F 6 HOH A 26 426 290 HOH HOH . F 6 HOH A 27 427 291 HOH HOH . F 6 HOH A 28 428 292 HOH HOH . F 6 HOH A 29 429 293 HOH HOH . F 6 HOH A 30 430 294 HOH HOH . F 6 HOH A 31 431 295 HOH HOH . F 6 HOH A 32 432 296 HOH HOH . F 6 HOH A 33 433 297 HOH HOH . F 6 HOH A 34 434 298 HOH HOH . F 6 HOH A 35 435 299 HOH HOH . F 6 HOH A 36 436 300 HOH HOH . F 6 HOH A 37 437 301 HOH HOH . F 6 HOH A 38 438 302 HOH HOH . F 6 HOH A 39 439 303 HOH HOH . F 6 HOH A 40 440 304 HOH HOH . F 6 HOH A 41 441 305 HOH HOH . F 6 HOH A 42 442 306 HOH HOH . F 6 HOH A 43 443 307 HOH HOH . F 6 HOH A 44 444 308 HOH HOH . F 6 HOH A 45 445 309 HOH HOH . F 6 HOH A 46 446 310 HOH HOH . F 6 HOH A 47 447 311 HOH HOH . F 6 HOH A 48 448 312 HOH HOH . F 6 HOH A 49 449 313 HOH HOH . F 6 HOH A 50 450 314 HOH HOH . F 6 HOH A 51 451 315 HOH HOH . F 6 HOH A 52 452 316 HOH HOH . F 6 HOH A 53 453 317 HOH HOH . F 6 HOH A 54 454 318 HOH HOH . F 6 HOH A 55 455 319 HOH HOH . F 6 HOH A 56 456 320 HOH HOH . F 6 HOH A 57 457 321 HOH HOH . F 6 HOH A 58 458 322 HOH HOH . F 6 HOH A 59 459 323 HOH HOH . F 6 HOH A 60 460 324 HOH HOH . F 6 HOH A 61 461 325 HOH HOH . F 6 HOH A 62 462 326 HOH HOH . F 6 HOH A 63 463 327 HOH HOH . F 6 HOH A 64 464 328 HOH HOH . F 6 HOH A 65 465 329 HOH HOH . F 6 HOH A 66 466 330 HOH HOH . F 6 HOH A 67 467 331 HOH HOH . F 6 HOH A 68 468 332 HOH HOH . F 6 HOH A 69 469 333 HOH HOH . F 6 HOH A 70 470 334 HOH HOH . F 6 HOH A 71 471 335 HOH HOH . F 6 HOH A 72 472 336 HOH HOH . F 6 HOH A 73 473 337 HOH HOH . F 6 HOH A 74 474 338 HOH HOH . F 6 HOH A 75 475 339 HOH HOH . F 6 HOH A 76 476 340 HOH HOH . F 6 HOH A 77 477 341 HOH HOH . F 6 HOH A 78 478 342 HOH HOH . F 6 HOH A 79 479 343 HOH HOH . F 6 HOH A 80 480 345 HOH HOH . F 6 HOH A 81 481 346 HOH HOH . F 6 HOH A 82 482 347 HOH HOH . F 6 HOH A 83 483 348 HOH HOH . F 6 HOH A 84 484 349 HOH HOH . F 6 HOH A 85 485 350 HOH HOH . F 6 HOH A 86 486 351 HOH HOH . F 6 HOH A 87 487 352 HOH HOH . F 6 HOH A 88 488 353 HOH HOH . F 6 HOH A 89 489 354 HOH HOH . F 6 HOH A 90 490 355 HOH HOH . F 6 HOH A 91 491 356 HOH HOH . F 6 HOH A 92 492 357 HOH HOH . F 6 HOH A 93 493 358 HOH HOH . F 6 HOH A 94 494 359 HOH HOH . F 6 HOH A 95 495 360 HOH HOH . F 6 HOH A 96 496 361 HOH HOH . F 6 HOH A 97 497 362 HOH HOH . F 6 HOH A 98 498 363 HOH HOH . F 6 HOH A 99 499 364 HOH HOH . F 6 HOH A 100 500 365 HOH HOH . F 6 HOH A 101 501 366 HOH HOH . F 6 HOH A 102 502 367 HOH HOH . F 6 HOH A 103 503 368 HOH HOH . F 6 HOH A 104 504 369 HOH HOH . F 6 HOH A 105 505 370 HOH HOH . F 6 HOH A 106 506 371 HOH HOH . F 6 HOH A 107 507 372 HOH HOH . F 6 HOH A 108 508 373 HOH HOH . F 6 HOH A 109 509 374 HOH HOH . F 6 HOH A 110 510 375 HOH HOH . F 6 HOH A 111 511 376 HOH HOH . F 6 HOH A 112 512 377 HOH HOH . F 6 HOH A 113 513 378 HOH HOH . F 6 HOH A 114 514 379 HOH HOH . F 6 HOH A 115 515 380 HOH HOH . F 6 HOH A 116 516 381 HOH HOH . F 6 HOH A 117 517 382 HOH HOH . F 6 HOH A 118 518 383 HOH HOH . F 6 HOH A 119 519 384 HOH HOH . F 6 HOH A 120 520 385 HOH HOH . F 6 HOH A 121 521 386 HOH HOH . F 6 HOH A 122 522 387 HOH HOH . F 6 HOH A 123 523 388 HOH HOH . F 6 HOH A 124 524 389 HOH HOH . F 6 HOH A 125 525 390 HOH HOH . F 6 HOH A 126 526 391 HOH HOH . F 6 HOH A 127 527 392 HOH HOH . F 6 HOH A 128 528 393 HOH HOH . F 6 HOH A 129 529 394 HOH HOH . F 6 HOH A 130 530 395 HOH HOH . F 6 HOH A 131 531 396 HOH HOH . F 6 HOH A 132 532 397 HOH HOH . F 6 HOH A 133 533 398 HOH HOH . F 6 HOH A 134 534 399 HOH HOH . F 6 HOH A 135 535 400 HOH HOH . F 6 HOH A 136 536 401 HOH HOH . F 6 HOH A 137 537 402 HOH HOH . F 6 HOH A 138 538 403 HOH HOH . F 6 HOH A 139 539 404 HOH HOH . F 6 HOH A 140 540 405 HOH HOH . F 6 HOH A 141 541 406 HOH HOH . F 6 HOH A 142 542 407 HOH HOH . F 6 HOH A 143 543 408 HOH HOH . F 6 HOH A 144 544 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 3MH . . . C 3 14.953 0.16 16.984 1 11.25 ? S1 3MH 302 A 1 HETATM 2 C C1 3MH . . . C 3 15.452 1.364 15.825 1 10.77 ? C1 3MH 302 A 1 HETATM 3 C C2 3MH . . . C 3 15.034 2.711 15.976 1 8.15 ? C2 3MH 302 A 1 HETATM 4 C C6 3MH . . . C 3 14.242 3.126 17.199 1 9.19 ? C6 3MH 302 A 1 HETATM 5 C C3 3MH . . . C 3 15.375 3.628 15.051 1 11.41 ? C3 3MH 302 A 1 HETATM 6 C C4 3MH . . . C 3 16.154 3.259 13.959 1 12.78 ? C4 3MH 302 A 1 HETATM 7 C C5 3MH . . . C 3 16.524 1.943 13.791 1 9.4 ? C5 3MH 302 A 1 HETATM 8 N N1 3MH . . . C 3 16.201 1.004 14.756 1 10.78 ? N1 3MH 302 A 1 HETATM 9 O O1 3MH . . . C 3 16.556 -0.274 14.589 1 13.9 ? O1 3MH 302 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #