data_4Q7W # _model_server_result.job_id E28KCuXAOyAXKfPhzbmqUg _model_server_result.datetime_utc '2024-11-21 22:33:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4Q7W # _exptl.entry_id 4Q7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.5 _cell.angle_gamma 90 _cell.entry_id 4Q7W _cell.length_a 42.189 _cell.length_b 41.418 _cell.length_c 72.173 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A O VAL 134 A VAL 135 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc5 A O GLN 136 A GLN 137 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc6 A SG CYS 205 A CYS 206 1_555 D HG MBO . A MBO 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 C S1 6MH . A 6MH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 F NA NA . A NA 305 1_555 G O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc9 F NA NA . A NA 305 1_555 G O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 243 n n CE1 CE2 MBO sing 244 n y CE1 CE6 MBO doub 245 n y CE2 CE3 MBO doub 246 n y CE2 HE2 MBO sing 247 n n CE3 CE4 MBO sing 248 n y CE3 HE3 MBO sing 249 n n CE4 CE5 MBO doub 250 n y CE4 CZ MBO sing 251 n n CE5 CE6 MBO sing 252 n y CE5 HE5 MBO sing 253 n n CE6 HE6 MBO sing 254 n n CZ OZ1 MBO doub 255 n n CZ OZ2 MBO sing 256 n n OZ2 HZ2 MBO sing 257 n n # _atom_sites.entry_id 4Q7W _atom_sites.fract_transf_matrix[1][1] 0.023703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 6MH A 1 302 263 6MH 6MH . D 4 MBO A 1 303 264 MBO MBO . E 5 DMS A 1 304 265 DMS DMS . F 6 NA A 1 305 449 NA NA . G 7 HOH A 1 401 266 HOH HOH . G 7 HOH A 2 402 267 HOH HOH . G 7 HOH A 3 403 268 HOH HOH . G 7 HOH A 4 404 269 HOH HOH . G 7 HOH A 5 405 270 HOH HOH . G 7 HOH A 6 406 271 HOH HOH . G 7 HOH A 7 407 272 HOH HOH . G 7 HOH A 8 408 273 HOH HOH . G 7 HOH A 9 409 274 HOH HOH . G 7 HOH A 10 410 275 HOH HOH . G 7 HOH A 11 411 276 HOH HOH . G 7 HOH A 12 412 277 HOH HOH . G 7 HOH A 13 413 278 HOH HOH . G 7 HOH A 14 414 279 HOH HOH . G 7 HOH A 15 415 280 HOH HOH . G 7 HOH A 16 416 281 HOH HOH . G 7 HOH A 17 417 282 HOH HOH . G 7 HOH A 18 418 283 HOH HOH . G 7 HOH A 19 419 284 HOH HOH . G 7 HOH A 20 420 285 HOH HOH . G 7 HOH A 21 421 286 HOH HOH . G 7 HOH A 22 422 287 HOH HOH . G 7 HOH A 23 423 288 HOH HOH . G 7 HOH A 24 424 289 HOH HOH . G 7 HOH A 25 425 290 HOH HOH . G 7 HOH A 26 426 291 HOH HOH . G 7 HOH A 27 427 292 HOH HOH . G 7 HOH A 28 428 293 HOH HOH . G 7 HOH A 29 429 294 HOH HOH . G 7 HOH A 30 430 295 HOH HOH . G 7 HOH A 31 431 296 HOH HOH . G 7 HOH A 32 432 297 HOH HOH . G 7 HOH A 33 433 298 HOH HOH . G 7 HOH A 34 434 299 HOH HOH . G 7 HOH A 35 435 300 HOH HOH . G 7 HOH A 36 436 301 HOH HOH . G 7 HOH A 37 437 302 HOH HOH . G 7 HOH A 38 438 303 HOH HOH . G 7 HOH A 39 439 304 HOH HOH . G 7 HOH A 40 440 305 HOH HOH . G 7 HOH A 41 441 306 HOH HOH . G 7 HOH A 42 442 307 HOH HOH . G 7 HOH A 43 443 308 HOH HOH . G 7 HOH A 44 444 309 HOH HOH . G 7 HOH A 45 445 310 HOH HOH . G 7 HOH A 46 446 311 HOH HOH . G 7 HOH A 47 447 312 HOH HOH . G 7 HOH A 48 448 313 HOH HOH . G 7 HOH A 49 449 314 HOH HOH . G 7 HOH A 50 450 315 HOH HOH . G 7 HOH A 51 451 316 HOH HOH . G 7 HOH A 52 452 317 HOH HOH . G 7 HOH A 53 453 318 HOH HOH . G 7 HOH A 54 454 319 HOH HOH . G 7 HOH A 55 455 320 HOH HOH . G 7 HOH A 56 456 321 HOH HOH . G 7 HOH A 57 457 322 HOH HOH . G 7 HOH A 58 458 323 HOH HOH . G 7 HOH A 59 459 324 HOH HOH . G 7 HOH A 60 460 325 HOH HOH . G 7 HOH A 61 461 326 HOH HOH . G 7 HOH A 62 462 327 HOH HOH . G 7 HOH A 63 463 328 HOH HOH . G 7 HOH A 64 464 329 HOH HOH . G 7 HOH A 65 465 330 HOH HOH . G 7 HOH A 66 466 331 HOH HOH . G 7 HOH A 67 467 332 HOH HOH . G 7 HOH A 68 468 333 HOH HOH . G 7 HOH A 69 469 334 HOH HOH . G 7 HOH A 70 470 335 HOH HOH . G 7 HOH A 71 471 336 HOH HOH . G 7 HOH A 72 472 337 HOH HOH . G 7 HOH A 73 473 338 HOH HOH . G 7 HOH A 74 474 339 HOH HOH . G 7 HOH A 75 475 340 HOH HOH . G 7 HOH A 76 476 341 HOH HOH . G 7 HOH A 77 477 342 HOH HOH . G 7 HOH A 78 478 343 HOH HOH . G 7 HOH A 79 479 344 HOH HOH . G 7 HOH A 80 480 345 HOH HOH . G 7 HOH A 81 481 346 HOH HOH . G 7 HOH A 82 482 347 HOH HOH . G 7 HOH A 83 483 348 HOH HOH . G 7 HOH A 84 484 349 HOH HOH . G 7 HOH A 85 485 350 HOH HOH . G 7 HOH A 86 486 351 HOH HOH . G 7 HOH A 87 487 352 HOH HOH . G 7 HOH A 88 488 353 HOH HOH . G 7 HOH A 89 489 354 HOH HOH . G 7 HOH A 90 490 355 HOH HOH . G 7 HOH A 91 491 356 HOH HOH . G 7 HOH A 92 492 357 HOH HOH . G 7 HOH A 93 493 358 HOH HOH . G 7 HOH A 94 494 359 HOH HOH . G 7 HOH A 95 495 360 HOH HOH . G 7 HOH A 96 496 361 HOH HOH . G 7 HOH A 97 497 362 HOH HOH . G 7 HOH A 98 498 363 HOH HOH . G 7 HOH A 99 499 364 HOH HOH . G 7 HOH A 100 500 365 HOH HOH . G 7 HOH A 101 501 366 HOH HOH . G 7 HOH A 102 502 367 HOH HOH . G 7 HOH A 103 503 368 HOH HOH . G 7 HOH A 104 504 369 HOH HOH . G 7 HOH A 105 505 370 HOH HOH . G 7 HOH A 106 506 371 HOH HOH . G 7 HOH A 107 507 372 HOH HOH . G 7 HOH A 108 508 373 HOH HOH . G 7 HOH A 109 509 374 HOH HOH . G 7 HOH A 110 510 375 HOH HOH . G 7 HOH A 111 511 376 HOH HOH . G 7 HOH A 112 512 377 HOH HOH . G 7 HOH A 113 513 378 HOH HOH . G 7 HOH A 114 514 379 HOH HOH . G 7 HOH A 115 515 380 HOH HOH . G 7 HOH A 116 516 381 HOH HOH . G 7 HOH A 117 517 382 HOH HOH . G 7 HOH A 118 518 383 HOH HOH . G 7 HOH A 119 519 384 HOH HOH . G 7 HOH A 120 520 385 HOH HOH . G 7 HOH A 121 521 386 HOH HOH . G 7 HOH A 122 522 387 HOH HOH . G 7 HOH A 123 523 388 HOH HOH . G 7 HOH A 124 524 389 HOH HOH . G 7 HOH A 125 525 390 HOH HOH . G 7 HOH A 126 526 391 HOH HOH . G 7 HOH A 127 527 392 HOH HOH . G 7 HOH A 128 528 393 HOH HOH . G 7 HOH A 129 529 394 HOH HOH . G 7 HOH A 130 530 395 HOH HOH . G 7 HOH A 131 531 396 HOH HOH . G 7 HOH A 132 532 397 HOH HOH . G 7 HOH A 133 533 398 HOH HOH . G 7 HOH A 134 534 399 HOH HOH . G 7 HOH A 135 535 400 HOH HOH . G 7 HOH A 136 536 401 HOH HOH . G 7 HOH A 137 537 402 HOH HOH . G 7 HOH A 138 538 403 HOH HOH . G 7 HOH A 139 539 404 HOH HOH . G 7 HOH A 140 540 405 HOH HOH . G 7 HOH A 141 541 406 HOH HOH . G 7 HOH A 142 542 407 HOH HOH . G 7 HOH A 143 543 408 HOH HOH . G 7 HOH A 144 544 409 HOH HOH . G 7 HOH A 145 545 410 HOH HOH . G 7 HOH A 146 546 411 HOH HOH . G 7 HOH A 147 547 412 HOH HOH . G 7 HOH A 148 548 413 HOH HOH . G 7 HOH A 149 549 414 HOH HOH . G 7 HOH A 150 550 415 HOH HOH . G 7 HOH A 151 551 416 HOH HOH . G 7 HOH A 152 552 417 HOH HOH . G 7 HOH A 153 553 418 HOH HOH . G 7 HOH A 154 554 419 HOH HOH . G 7 HOH A 155 555 420 HOH HOH . G 7 HOH A 156 556 421 HOH HOH . G 7 HOH A 157 557 422 HOH HOH . G 7 HOH A 158 558 423 HOH HOH . G 7 HOH A 159 559 424 HOH HOH . G 7 HOH A 160 560 425 HOH HOH . G 7 HOH A 161 561 426 HOH HOH . G 7 HOH A 162 562 427 HOH HOH . G 7 HOH A 163 563 428 HOH HOH . G 7 HOH A 164 564 429 HOH HOH . G 7 HOH A 165 565 430 HOH HOH . G 7 HOH A 166 566 431 HOH HOH . G 7 HOH A 167 567 432 HOH HOH . G 7 HOH A 168 568 433 HOH HOH . G 7 HOH A 169 569 434 HOH HOH . G 7 HOH A 170 570 435 HOH HOH . G 7 HOH A 171 571 436 HOH HOH . G 7 HOH A 172 572 437 HOH HOH . G 7 HOH A 173 573 438 HOH HOH . G 7 HOH A 174 574 439 HOH HOH . G 7 HOH A 175 575 440 HOH HOH . G 7 HOH A 176 576 441 HOH HOH . G 7 HOH A 177 577 442 HOH HOH . G 7 HOH A 178 578 443 HOH HOH . G 7 HOH A 179 579 444 HOH HOH . G 7 HOH A 180 580 445 HOH HOH . G 7 HOH A 181 581 446 HOH HOH . G 7 HOH A 182 582 447 HOH HOH . G 7 HOH A 183 583 448 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . . . D 4 18.858 10.233 23.796 0.6 20.48 ? HG MBO 303 A 1 HETATM 2 C CE1 MBO . . . D 4 20.147 11.496 24.869 0.6 17.46 ? CE1 MBO 303 A 1 HETATM 3 C CE2 MBO . . . D 4 21.131 12.161 24.162 0.6 17.26 ? CE2 MBO 303 A 1 HETATM 4 C CE3 MBO . . . D 4 21.882 12.957 24.945 0.6 18.96 ? CE3 MBO 303 A 1 HETATM 5 C CE4 MBO . . . D 4 21.618 12.917 26.32 0.6 19.59 ? CE4 MBO 303 A 1 HETATM 6 C CE5 MBO . . . D 4 20.615 12.127 26.941 0.6 15.27 ? CE5 MBO 303 A 1 HETATM 7 C CE6 MBO . . . D 4 19.813 11.24 26.146 0.6 3.6 ? CE6 MBO 303 A 1 HETATM 8 C CZ MBO . . . D 4 22.566 13.799 27.045 0.6 22.59 ? CZ MBO 303 A 1 HETATM 9 O OZ1 MBO . . . D 4 23.224 14.551 26.303 0.6 26.86 ? OZ1 MBO 303 A 1 HETATM 10 O OZ2 MBO . . . D 4 22.672 13.767 28.271 0.6 25.17 ? OZ2 MBO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #