data_4Q7X # _model_server_result.job_id 2_rMNeSn1wc12M6be_TtdQ _model_server_result.datetime_utc '2024-11-05 00:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 4Q7X # _exptl.entry_id 4Q7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q7X _cell.length_a 70.366 _cell.length_b 70.366 _cell.length_c 150.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J 1 1 B,D,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 956 NAG 2 n C FUC 2 C 2 FUC A 957 FUC 2 n D NAG 1 D 1 NAG B 956 NAG 2 n D FUC 2 D 2 FUC B 957 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 124 A CYS 136 1_555 A SG CYS 191 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 155 A CYS 168 1_555 A SG CYS 169 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 181 A CYS 191 1_555 A SG CYS 206 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 124 B CYS 136 1_555 B SG CYS 191 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 155 B CYS 168 1_555 B SG CYS 169 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 181 B CYS 191 1_555 B SG CYS 206 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 96 A ASN 109 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 156 A ASN 169 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B ND2 ASN 96 B ASN 109 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 B ND2 ASN 156 B ASN 169 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale6 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 273 n n C1 O1 NAG sing 274 n n C1 O5 NAG sing 275 n n C1 H1 NAG sing 276 n n C2 C3 NAG sing 277 n n C2 N2 NAG sing 278 n n C2 H2 NAG sing 279 n n C3 C4 NAG sing 280 n n C3 O3 NAG sing 281 n n C3 H3 NAG sing 282 n n C4 C5 NAG sing 283 n n C4 O4 NAG sing 284 n n C4 H4 NAG sing 285 n n C5 C6 NAG sing 286 n n C5 O5 NAG sing 287 n n C5 H5 NAG sing 288 n n C6 O6 NAG sing 289 n n C6 H61 NAG sing 290 n n C6 H62 NAG sing 291 n n C7 C8 NAG sing 292 n n C7 N2 NAG sing 293 n n C7 O7 NAG doub 294 n n C8 H81 NAG sing 295 n n C8 H82 NAG sing 296 n n C8 H83 NAG sing 297 n n N2 HN2 NAG sing 298 n n O1 HO1 NAG sing 299 n n O3 HO3 NAG sing 300 n n O4 HO4 NAG sing 301 n n O6 HO6 NAG sing 302 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4Q7X _atom_sites.fract_transf_matrix[1][1] 0.014211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 303 896 NAG NAG . F 4 GOL A 1 304 501 GOL GOL . G 4 GOL A 1 305 502 GOL GOL . H 3 NAG B 1 303 896 NAG NAG . I 4 GOL B 1 304 501 GOL GOL . J 5 HOH A 1 401 2 HOH HOH . J 5 HOH A 2 402 4 HOH HOH . J 5 HOH A 3 403 6 HOH HOH . J 5 HOH A 4 404 8 HOH HOH . J 5 HOH A 5 405 9 HOH HOH . J 5 HOH A 6 406 11 HOH HOH . J 5 HOH A 7 407 13 HOH HOH . J 5 HOH A 8 408 14 HOH HOH . J 5 HOH A 9 409 15 HOH HOH . J 5 HOH A 10 410 16 HOH HOH . J 5 HOH A 11 411 17 HOH HOH . J 5 HOH A 12 412 18 HOH HOH . J 5 HOH A 13 413 19 HOH HOH . J 5 HOH A 14 414 20 HOH HOH . J 5 HOH A 15 415 21 HOH HOH . J 5 HOH A 16 416 22 HOH HOH . J 5 HOH A 17 417 23 HOH HOH . J 5 HOH A 18 418 24 HOH HOH . J 5 HOH A 19 419 25 HOH HOH . J 5 HOH A 20 420 26 HOH HOH . J 5 HOH A 21 421 32 HOH HOH . J 5 HOH A 22 422 38 HOH HOH . J 5 HOH A 23 423 39 HOH HOH . J 5 HOH A 24 424 40 HOH HOH . J 5 HOH A 25 425 49 HOH HOH . J 5 HOH A 26 426 51 HOH HOH . J 5 HOH A 27 427 52 HOH HOH . J 5 HOH A 28 428 54 HOH HOH . J 5 HOH A 29 429 59 HOH HOH . J 5 HOH A 30 430 61 HOH HOH . J 5 HOH A 31 431 62 HOH HOH . J 5 HOH A 32 432 66 HOH HOH . J 5 HOH A 33 433 67 HOH HOH . J 5 HOH A 34 434 68 HOH HOH . J 5 HOH A 35 435 71 HOH HOH . J 5 HOH A 36 436 78 HOH HOH . J 5 HOH A 37 437 81 HOH HOH . J 5 HOH A 38 438 84 HOH HOH . J 5 HOH A 39 439 87 HOH HOH . J 5 HOH A 40 440 93 HOH HOH . J 5 HOH A 41 441 94 HOH HOH . J 5 HOH A 42 442 95 HOH HOH . J 5 HOH A 43 443 97 HOH HOH . J 5 HOH A 44 444 98 HOH HOH . J 5 HOH A 45 445 101 HOH HOH . J 5 HOH A 46 446 102 HOH HOH . J 5 HOH A 47 447 103 HOH HOH . J 5 HOH A 48 448 104 HOH HOH . J 5 HOH A 49 449 106 HOH HOH . J 5 HOH A 50 450 107 HOH HOH . J 5 HOH A 51 451 108 HOH HOH . J 5 HOH A 52 452 109 HOH HOH . J 5 HOH A 53 453 110 HOH HOH . J 5 HOH A 54 454 112 HOH HOH . J 5 HOH A 55 455 113 HOH HOH . J 5 HOH A 56 456 115 HOH HOH . J 5 HOH A 57 457 117 HOH HOH . J 5 HOH A 58 458 118 HOH HOH . J 5 HOH A 59 459 121 HOH HOH . K 5 HOH B 1 401 1 HOH HOH . K 5 HOH B 2 402 3 HOH HOH . K 5 HOH B 3 403 5 HOH HOH . K 5 HOH B 4 404 12 HOH HOH . K 5 HOH B 5 405 30 HOH HOH . K 5 HOH B 6 406 31 HOH HOH . K 5 HOH B 7 407 33 HOH HOH . K 5 HOH B 8 408 34 HOH HOH . K 5 HOH B 9 409 35 HOH HOH . K 5 HOH B 10 410 36 HOH HOH . K 5 HOH B 11 411 37 HOH HOH . K 5 HOH B 12 412 41 HOH HOH . K 5 HOH B 13 413 42 HOH HOH . K 5 HOH B 14 414 43 HOH HOH . K 5 HOH B 15 415 44 HOH HOH . K 5 HOH B 16 416 45 HOH HOH . K 5 HOH B 17 417 46 HOH HOH . K 5 HOH B 18 418 47 HOH HOH . K 5 HOH B 19 419 50 HOH HOH . K 5 HOH B 20 420 53 HOH HOH . K 5 HOH B 21 421 55 HOH HOH . K 5 HOH B 22 422 60 HOH HOH . K 5 HOH B 23 423 63 HOH HOH . K 5 HOH B 24 424 64 HOH HOH . K 5 HOH B 25 425 65 HOH HOH . K 5 HOH B 26 426 69 HOH HOH . K 5 HOH B 27 427 70 HOH HOH . K 5 HOH B 28 428 72 HOH HOH . K 5 HOH B 29 429 73 HOH HOH . K 5 HOH B 30 430 74 HOH HOH . K 5 HOH B 31 431 79 HOH HOH . K 5 HOH B 32 432 80 HOH HOH . K 5 HOH B 33 433 82 HOH HOH . K 5 HOH B 34 434 83 HOH HOH . K 5 HOH B 35 435 85 HOH HOH . K 5 HOH B 36 436 86 HOH HOH . K 5 HOH B 37 437 88 HOH HOH . K 5 HOH B 38 438 89 HOH HOH . K 5 HOH B 39 439 90 HOH HOH . K 5 HOH B 40 440 91 HOH HOH . K 5 HOH B 41 441 92 HOH HOH . K 5 HOH B 42 442 96 HOH HOH . K 5 HOH B 43 443 99 HOH HOH . K 5 HOH B 44 444 100 HOH HOH . K 5 HOH B 45 445 105 HOH HOH . K 5 HOH B 46 446 111 HOH HOH . K 5 HOH B 47 447 114 HOH HOH . K 5 HOH B 48 448 116 HOH HOH . K 5 HOH B 49 449 119 HOH HOH . K 5 HOH B 50 450 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -0.278 -27.793 15.846 1 99.66 ? C1 NAG 303 A 1 HETATM 2 C C2 NAG . . . E 3 -1.124 -27.654 17.113 1 102.8 ? C2 NAG 303 A 1 HETATM 3 C C3 NAG . . . E 3 -0.572 -28.607 18.178 1 104.55 ? C3 NAG 303 A 1 HETATM 4 C C4 NAG . . . E 3 -0.528 -30.043 17.648 1 104.21 ? C4 NAG 303 A 1 HETATM 5 C C5 NAG . . . E 3 0.261 -30.11 16.34 1 101.91 ? C5 NAG 303 A 1 HETATM 6 C C6 NAG . . . E 3 0.216 -31.466 15.664 1 99.59 ? C6 NAG 303 A 1 HETATM 7 C C7 NAG . . . E 3 -2.146 -25.432 17.479 1 100.93 ? C7 NAG 303 A 1 HETATM 8 C C8 NAG . . . E 3 -1.895 -24.027 17.939 1 100.18 ? C8 NAG 303 A 1 HETATM 9 N N2 NAG . . . E 3 -1.107 -26.28 17.592 1 102.42 ? N2 NAG 303 A 1 HETATM 10 O O3 NAG . . . E 3 -1.373 -28.539 19.357 1 104.62 ? O3 NAG 303 A 1 HETATM 11 O O4 NAG . . . E 3 0.072 -30.901 18.614 1 104.94 ? O4 NAG 303 A 1 HETATM 12 O O5 NAG . . . E 3 -0.264 -29.156 15.4 1 101.31 ? O5 NAG 303 A 1 HETATM 13 O O6 NAG . . . E 3 -0.984 -31.678 14.919 1 97.49 ? O6 NAG 303 A 1 HETATM 14 O O7 NAG . . . E 3 -3.232 -25.78 17.019 1 99.98 ? O7 NAG 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #