data_4Q7X # _model_server_result.job_id R_GzqdPyoYtr-gpmgUrFlg _model_server_result.datetime_utc '2024-11-05 00:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4q7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 4Q7X # _exptl.entry_id 4Q7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Q7X _cell.length_a 70.366 _cell.length_b 70.366 _cell.length_c 150.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Q7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J 1 1 B,D,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 956 NAG 2 n C FUC 2 C 2 FUC A 957 FUC 2 n D NAG 1 D 1 NAG B 956 NAG 2 n D FUC 2 D 2 FUC B 957 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 124 A CYS 136 1_555 A SG CYS 191 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 155 A CYS 168 1_555 A SG CYS 169 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 181 A CYS 191 1_555 A SG CYS 206 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 124 B CYS 136 1_555 B SG CYS 191 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 155 B CYS 168 1_555 B SG CYS 169 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 181 B CYS 191 1_555 B SG CYS 206 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 96 A ASN 109 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 156 A ASN 169 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B ND2 ASN 96 B ASN 109 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 B ND2 ASN 156 B ASN 169 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale6 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 4Q7X _atom_sites.fract_transf_matrix[1][1] 0.014211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 303 896 NAG NAG . F 4 GOL A 1 304 501 GOL GOL . G 4 GOL A 1 305 502 GOL GOL . H 3 NAG B 1 303 896 NAG NAG . I 4 GOL B 1 304 501 GOL GOL . J 5 HOH A 1 401 2 HOH HOH . J 5 HOH A 2 402 4 HOH HOH . J 5 HOH A 3 403 6 HOH HOH . J 5 HOH A 4 404 8 HOH HOH . J 5 HOH A 5 405 9 HOH HOH . J 5 HOH A 6 406 11 HOH HOH . J 5 HOH A 7 407 13 HOH HOH . J 5 HOH A 8 408 14 HOH HOH . J 5 HOH A 9 409 15 HOH HOH . J 5 HOH A 10 410 16 HOH HOH . J 5 HOH A 11 411 17 HOH HOH . J 5 HOH A 12 412 18 HOH HOH . J 5 HOH A 13 413 19 HOH HOH . J 5 HOH A 14 414 20 HOH HOH . J 5 HOH A 15 415 21 HOH HOH . J 5 HOH A 16 416 22 HOH HOH . J 5 HOH A 17 417 23 HOH HOH . J 5 HOH A 18 418 24 HOH HOH . J 5 HOH A 19 419 25 HOH HOH . J 5 HOH A 20 420 26 HOH HOH . J 5 HOH A 21 421 32 HOH HOH . J 5 HOH A 22 422 38 HOH HOH . J 5 HOH A 23 423 39 HOH HOH . J 5 HOH A 24 424 40 HOH HOH . J 5 HOH A 25 425 49 HOH HOH . J 5 HOH A 26 426 51 HOH HOH . J 5 HOH A 27 427 52 HOH HOH . J 5 HOH A 28 428 54 HOH HOH . J 5 HOH A 29 429 59 HOH HOH . J 5 HOH A 30 430 61 HOH HOH . J 5 HOH A 31 431 62 HOH HOH . J 5 HOH A 32 432 66 HOH HOH . J 5 HOH A 33 433 67 HOH HOH . J 5 HOH A 34 434 68 HOH HOH . J 5 HOH A 35 435 71 HOH HOH . J 5 HOH A 36 436 78 HOH HOH . J 5 HOH A 37 437 81 HOH HOH . J 5 HOH A 38 438 84 HOH HOH . J 5 HOH A 39 439 87 HOH HOH . J 5 HOH A 40 440 93 HOH HOH . J 5 HOH A 41 441 94 HOH HOH . J 5 HOH A 42 442 95 HOH HOH . J 5 HOH A 43 443 97 HOH HOH . J 5 HOH A 44 444 98 HOH HOH . J 5 HOH A 45 445 101 HOH HOH . J 5 HOH A 46 446 102 HOH HOH . J 5 HOH A 47 447 103 HOH HOH . J 5 HOH A 48 448 104 HOH HOH . J 5 HOH A 49 449 106 HOH HOH . J 5 HOH A 50 450 107 HOH HOH . J 5 HOH A 51 451 108 HOH HOH . J 5 HOH A 52 452 109 HOH HOH . J 5 HOH A 53 453 110 HOH HOH . J 5 HOH A 54 454 112 HOH HOH . J 5 HOH A 55 455 113 HOH HOH . J 5 HOH A 56 456 115 HOH HOH . J 5 HOH A 57 457 117 HOH HOH . J 5 HOH A 58 458 118 HOH HOH . J 5 HOH A 59 459 121 HOH HOH . K 5 HOH B 1 401 1 HOH HOH . K 5 HOH B 2 402 3 HOH HOH . K 5 HOH B 3 403 5 HOH HOH . K 5 HOH B 4 404 12 HOH HOH . K 5 HOH B 5 405 30 HOH HOH . K 5 HOH B 6 406 31 HOH HOH . K 5 HOH B 7 407 33 HOH HOH . K 5 HOH B 8 408 34 HOH HOH . K 5 HOH B 9 409 35 HOH HOH . K 5 HOH B 10 410 36 HOH HOH . K 5 HOH B 11 411 37 HOH HOH . K 5 HOH B 12 412 41 HOH HOH . K 5 HOH B 13 413 42 HOH HOH . K 5 HOH B 14 414 43 HOH HOH . K 5 HOH B 15 415 44 HOH HOH . K 5 HOH B 16 416 45 HOH HOH . K 5 HOH B 17 417 46 HOH HOH . K 5 HOH B 18 418 47 HOH HOH . K 5 HOH B 19 419 50 HOH HOH . K 5 HOH B 20 420 53 HOH HOH . K 5 HOH B 21 421 55 HOH HOH . K 5 HOH B 22 422 60 HOH HOH . K 5 HOH B 23 423 63 HOH HOH . K 5 HOH B 24 424 64 HOH HOH . K 5 HOH B 25 425 65 HOH HOH . K 5 HOH B 26 426 69 HOH HOH . K 5 HOH B 27 427 70 HOH HOH . K 5 HOH B 28 428 72 HOH HOH . K 5 HOH B 29 429 73 HOH HOH . K 5 HOH B 30 430 74 HOH HOH . K 5 HOH B 31 431 79 HOH HOH . K 5 HOH B 32 432 80 HOH HOH . K 5 HOH B 33 433 82 HOH HOH . K 5 HOH B 34 434 83 HOH HOH . K 5 HOH B 35 435 85 HOH HOH . K 5 HOH B 36 436 86 HOH HOH . K 5 HOH B 37 437 88 HOH HOH . K 5 HOH B 38 438 89 HOH HOH . K 5 HOH B 39 439 90 HOH HOH . K 5 HOH B 40 440 91 HOH HOH . K 5 HOH B 41 441 92 HOH HOH . K 5 HOH B 42 442 96 HOH HOH . K 5 HOH B 43 443 99 HOH HOH . K 5 HOH B 44 444 100 HOH HOH . K 5 HOH B 45 445 105 HOH HOH . K 5 HOH B 46 446 111 HOH HOH . K 5 HOH B 47 447 114 HOH HOH . K 5 HOH B 48 448 116 HOH HOH . K 5 HOH B 49 449 119 HOH HOH . K 5 HOH B 50 450 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 11.783 -22.674 -12.538 1 61.2 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . G 4 11.947 -22.672 -13.954 1 64.08 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . G 4 10.371 -22.297 -12.152 1 57.2 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . G 4 9.495 -23.387 -12.443 1 57.7 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . G 4 10.322 -21.963 -10.677 1 50.16 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . G 4 9.159 -21.238 -10.291 1 43.4 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #