data_4Q87
#
_model_server_result.job_id            a_E3pkmC7HW8IjHjG2E6Mg 
_model_server_result.datetime_utc      '2024-11-22 19:01:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4q87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    4Q87 
#
_exptl.entry_id    4Q87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.97 
_cell.angle_gamma         90 
_cell.entry_id            4Q87 
_cell.length_a            42.203 
_cell.length_b            41.597 
_cell.length_c            71.954 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Q87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc4 A O VAL 134 A VAL 135 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc5 A O GLN 136 A GLN 137 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? 
metalc ? metalc6 A SG CYS 205 A CYS 206 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D O2 4FH . A 4FH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc8 B ZN ZN . A ZN 301 1_555 D S1 4FH . A 4FH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 99 n n 
S C1 DMS sing 100 n n 
S C2 DMS sing 101 n n 
C1 H11 DMS sing 102 n n 
C1 H12 DMS sing 103 n n 
C1 H13 DMS sing 104 n n 
C2 H21 DMS sing 105 n n 
C2 H22 DMS sing 106 n n 
C2 H23 DMS sing 107 n n 
#
_atom_sites.entry_id                     4Q87 
_atom_sites.fract_transf_matrix[1][1]    0.023695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005896 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 MBO A 1 302 263 MBO MBO . 
D 4 4FH A 1 303 264 4FH 4FH . 
E 5 DMS A 1 304 265 DMS DMS . 
F 6 HOH A 1 401 266 HOH HOH . 
F 6 HOH A 2 402 267 HOH HOH . 
F 6 HOH A 3 403 268 HOH HOH . 
F 6 HOH A 4 404 269 HOH HOH . 
F 6 HOH A 5 405 270 HOH HOH . 
F 6 HOH A 6 406 271 HOH HOH . 
F 6 HOH A 7 407 272 HOH HOH . 
F 6 HOH A 8 408 273 HOH HOH . 
F 6 HOH A 9 409 274 HOH HOH . 
F 6 HOH A 10 410 275 HOH HOH . 
F 6 HOH A 11 411 276 HOH HOH . 
F 6 HOH A 12 412 277 HOH HOH . 
F 6 HOH A 13 413 278 HOH HOH . 
F 6 HOH A 14 414 279 HOH HOH . 
F 6 HOH A 15 415 280 HOH HOH . 
F 6 HOH A 16 416 281 HOH HOH . 
F 6 HOH A 17 417 282 HOH HOH . 
F 6 HOH A 18 418 283 HOH HOH . 
F 6 HOH A 19 419 284 HOH HOH . 
F 6 HOH A 20 420 285 HOH HOH . 
F 6 HOH A 21 421 286 HOH HOH . 
F 6 HOH A 22 422 287 HOH HOH . 
F 6 HOH A 23 423 288 HOH HOH . 
F 6 HOH A 24 424 289 HOH HOH . 
F 6 HOH A 25 425 290 HOH HOH . 
F 6 HOH A 26 426 291 HOH HOH . 
F 6 HOH A 27 427 292 HOH HOH . 
F 6 HOH A 28 428 293 HOH HOH . 
F 6 HOH A 29 429 294 HOH HOH . 
F 6 HOH A 30 430 295 HOH HOH . 
F 6 HOH A 31 431 296 HOH HOH . 
F 6 HOH A 32 432 297 HOH HOH . 
F 6 HOH A 33 433 298 HOH HOH . 
F 6 HOH A 34 434 299 HOH HOH . 
F 6 HOH A 35 435 300 HOH HOH . 
F 6 HOH A 36 436 301 HOH HOH . 
F 6 HOH A 37 437 302 HOH HOH . 
F 6 HOH A 38 438 303 HOH HOH . 
F 6 HOH A 39 439 304 HOH HOH . 
F 6 HOH A 40 440 305 HOH HOH . 
F 6 HOH A 41 441 306 HOH HOH . 
F 6 HOH A 42 442 307 HOH HOH . 
F 6 HOH A 43 443 308 HOH HOH . 
F 6 HOH A 44 444 309 HOH HOH . 
F 6 HOH A 45 445 310 HOH HOH . 
F 6 HOH A 46 446 311 HOH HOH . 
F 6 HOH A 47 447 312 HOH HOH . 
F 6 HOH A 48 448 313 HOH HOH . 
F 6 HOH A 49 449 314 HOH HOH . 
F 6 HOH A 50 450 315 HOH HOH . 
F 6 HOH A 51 451 316 HOH HOH . 
F 6 HOH A 52 452 317 HOH HOH . 
F 6 HOH A 53 453 318 HOH HOH . 
F 6 HOH A 54 454 319 HOH HOH . 
F 6 HOH A 55 455 320 HOH HOH . 
F 6 HOH A 56 456 321 HOH HOH . 
F 6 HOH A 57 457 322 HOH HOH . 
F 6 HOH A 58 458 323 HOH HOH . 
F 6 HOH A 59 459 324 HOH HOH . 
F 6 HOH A 60 460 325 HOH HOH . 
F 6 HOH A 61 461 326 HOH HOH . 
F 6 HOH A 62 462 327 HOH HOH . 
F 6 HOH A 63 463 328 HOH HOH . 
F 6 HOH A 64 464 329 HOH HOH . 
F 6 HOH A 65 465 330 HOH HOH . 
F 6 HOH A 66 466 331 HOH HOH . 
F 6 HOH A 67 467 332 HOH HOH . 
F 6 HOH A 68 468 333 HOH HOH . 
F 6 HOH A 69 469 334 HOH HOH . 
F 6 HOH A 70 470 335 HOH HOH . 
F 6 HOH A 71 471 336 HOH HOH . 
F 6 HOH A 72 472 337 HOH HOH . 
F 6 HOH A 73 473 338 HOH HOH . 
F 6 HOH A 74 474 339 HOH HOH . 
F 6 HOH A 75 475 340 HOH HOH . 
F 6 HOH A 76 476 341 HOH HOH . 
F 6 HOH A 77 477 342 HOH HOH . 
F 6 HOH A 78 478 343 HOH HOH . 
F 6 HOH A 79 479 344 HOH HOH . 
F 6 HOH A 80 480 345 HOH HOH . 
F 6 HOH A 81 481 346 HOH HOH . 
F 6 HOH A 82 482 347 HOH HOH . 
F 6 HOH A 83 483 348 HOH HOH . 
F 6 HOH A 84 484 349 HOH HOH . 
F 6 HOH A 85 485 350 HOH HOH . 
F 6 HOH A 86 486 351 HOH HOH . 
F 6 HOH A 87 487 352 HOH HOH . 
F 6 HOH A 88 488 353 HOH HOH . 
F 6 HOH A 89 489 354 HOH HOH . 
F 6 HOH A 90 490 355 HOH HOH . 
F 6 HOH A 91 491 356 HOH HOH . 
F 6 HOH A 92 492 357 HOH HOH . 
F 6 HOH A 93 493 358 HOH HOH . 
F 6 HOH A 94 494 359 HOH HOH . 
F 6 HOH A 95 495 360 HOH HOH . 
F 6 HOH A 96 496 361 HOH HOH . 
F 6 HOH A 97 497 362 HOH HOH . 
F 6 HOH A 98 498 363 HOH HOH . 
F 6 HOH A 99 499 364 HOH HOH . 
F 6 HOH A 100 500 365 HOH HOH . 
F 6 HOH A 101 501 366 HOH HOH . 
F 6 HOH A 102 502 367 HOH HOH . 
F 6 HOH A 103 503 368 HOH HOH . 
F 6 HOH A 104 504 369 HOH HOH . 
F 6 HOH A 105 505 370 HOH HOH . 
F 6 HOH A 106 506 371 HOH HOH . 
F 6 HOH A 107 507 372 HOH HOH . 
F 6 HOH A 108 508 373 HOH HOH . 
F 6 HOH A 109 509 374 HOH HOH . 
F 6 HOH A 110 510 375 HOH HOH . 
F 6 HOH A 111 511 376 HOH HOH . 
F 6 HOH A 112 512 377 HOH HOH . 
F 6 HOH A 113 513 378 HOH HOH . 
F 6 HOH A 114 514 379 HOH HOH . 
F 6 HOH A 115 515 380 HOH HOH . 
F 6 HOH A 116 516 381 HOH HOH . 
F 6 HOH A 117 517 382 HOH HOH . 
F 6 HOH A 118 518 383 HOH HOH . 
F 6 HOH A 119 519 384 HOH HOH . 
F 6 HOH A 120 520 385 HOH HOH . 
F 6 HOH A 121 521 386 HOH HOH . 
F 6 HOH A 122 522 387 HOH HOH . 
F 6 HOH A 123 523 388 HOH HOH . 
F 6 HOH A 124 524 389 HOH HOH . 
F 6 HOH A 125 525 390 HOH HOH . 
F 6 HOH A 126 526 391 HOH HOH . 
F 6 HOH A 127 527 392 HOH HOH . 
F 6 HOH A 128 528 393 HOH HOH . 
F 6 HOH A 129 529 394 HOH HOH . 
F 6 HOH A 130 530 395 HOH HOH . 
F 6 HOH A 131 531 396 HOH HOH . 
F 6 HOH A 132 532 397 HOH HOH . 
F 6 HOH A 133 533 398 HOH HOH . 
F 6 HOH A 134 534 399 HOH HOH . 
F 6 HOH A 135 535 400 HOH HOH . 
F 6 HOH A 136 536 401 HOH HOH . 
F 6 HOH A 137 537 402 HOH HOH . 
F 6 HOH A 138 538 403 HOH HOH . 
F 6 HOH A 139 539 404 HOH HOH . 
F 6 HOH A 140 540 405 HOH HOH . 
F 6 HOH A 141 541 406 HOH HOH . 
F 6 HOH A 142 542 407 HOH HOH . 
F 6 HOH A 143 543 408 HOH HOH . 
F 6 HOH A 144 544 409 HOH HOH . 
F 6 HOH A 145 545 410 HOH HOH . 
F 6 HOH A 146 546 411 HOH HOH . 
F 6 HOH A 147 547 412 HOH HOH . 
F 6 HOH A 148 548 413 HOH HOH . 
F 6 HOH A 149 549 414 HOH HOH . 
F 6 HOH A 150 550 415 HOH HOH . 
F 6 HOH A 151 551 416 HOH HOH . 
F 6 HOH A 152 552 417 HOH HOH . 
F 6 HOH A 153 553 418 HOH HOH . 
F 6 HOH A 154 554 419 HOH HOH . 
F 6 HOH A 155 555 420 HOH HOH . 
F 6 HOH A 156 556 421 HOH HOH . 
F 6 HOH A 157 557 422 HOH HOH . 
F 6 HOH A 158 558 423 HOH HOH . 
F 6 HOH A 159 559 424 HOH HOH . 
F 6 HOH A 160 560 425 HOH HOH . 
F 6 HOH A 161 561 426 HOH HOH . 
F 6 HOH A 162 562 427 HOH HOH . 
F 6 HOH A 163 563 428 HOH HOH . 
F 6 HOH A 164 564 429 HOH HOH . 
F 6 HOH A 165 565 430 HOH HOH . 
F 6 HOH A 166 566 431 HOH HOH . 
F 6 HOH A 167 567 432 HOH HOH . 
F 6 HOH A 168 568 433 HOH HOH . 
F 6 HOH A 169 569 434 HOH HOH . 
F 6 HOH A 170 570 435 HOH HOH . 
F 6 HOH A 171 571 436 HOH HOH . 
F 6 HOH A 172 572 437 HOH HOH . 
F 6 HOH A 173 573 438 HOH HOH . 
F 6 HOH A 174 574 439 HOH HOH . 
F 6 HOH A 175 575 440 HOH HOH . 
F 6 HOH A 176 576 441 HOH HOH . 
F 6 HOH A 177 577 442 HOH HOH . 
F 6 HOH A 178 578 443 HOH HOH . 
F 6 HOH A 179 579 444 HOH HOH . 
F 6 HOH A 180 580 445 HOH HOH . 
F 6 HOH A 181 581 446 HOH HOH . 
F 6 HOH A 182 582 447 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 5 22.467 -11.791 14.978 1 26.34 ? S DMS 304 A 1 
HETATM 2 O O DMS . . . E 5 23.458 -11.374 13.494 1 20.98 ? O DMS 304 A 1 
HETATM 3 C C1 DMS . . . E 5 23.093 -13.521 15.164 1 24.07 ? C1 DMS 304 A 1 
HETATM 4 C C2 DMS . . . E 5 22.767 -11.257 16.725 1 10.86 ? C2 DMS 304 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           4 
#