data_4QA4 # _model_server_result.job_id SUkF4kRQZbOpP7HN07Kf-w _model_server_result.datetime_utc '2024-11-16 10:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qa4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4QA4 # _exptl.entry_id 4QA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QA4 _cell.length_a 80.665 _cell.length_b 80.665 _cell.length_c 107.383 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -71.588667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc2 A O ASP 176 A ASP 176 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc14 B O4 B3N . A B3N 501 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc15 B O2 B3N . A B3N 501 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc16 E K K . A K 504 1_555 I O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc17 E K K . A K 504 1_555 I O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? # _chem_comp.formula 'C16 H25 N3 O3' _chem_comp.formula_weight 307.388 _chem_comp.id B3N _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms M344 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C13 B3N doub 70 n n C13 C14 B3N sing 71 n n C13 N12 B3N sing 72 n n C14 C15 B3N doub 73 n y C14 C19 B3N sing 74 n y C15 C16 B3N sing 75 n y C15 H15 B3N sing 76 n n C16 C17 B3N doub 77 n y C16 H16 B3N sing 78 n n C17 N20 B3N sing 79 n n C17 C18 B3N sing 80 n y N20 C22 B3N sing 81 n n N20 C21 B3N sing 82 n n C22 H221 B3N sing 83 n n C22 H222 B3N sing 84 n n C22 H223 B3N sing 85 n n C21 H211 B3N sing 86 n n C21 H212 B3N sing 87 n n C21 H213 B3N sing 88 n n C18 C19 B3N doub 89 n y C18 H18 B3N sing 90 n n C19 H19 B3N sing 91 n n N12 C10 B3N sing 92 n n N12 H12 B3N sing 93 n n C10 C9 B3N sing 94 n n C10 H101 B3N sing 95 n n C10 H102 B3N sing 96 n n C9 C8 B3N sing 97 n n C9 H91 B3N sing 98 n n C9 H92 B3N sing 99 n n C8 C7 B3N sing 100 n n C8 H81 B3N sing 101 n n C8 H82 B3N sing 102 n n C7 C6 B3N sing 103 n n C7 H71 B3N sing 104 n n C7 H72 B3N sing 105 n n C6 C5 B3N sing 106 n n C6 H61 B3N sing 107 n n C6 H62 B3N sing 108 n n C5 C1 B3N sing 109 n n C5 H51 B3N sing 110 n n C5 H52 B3N sing 111 n n C1 O2 B3N doub 112 n n C1 N3 B3N sing 113 n n N3 O4 B3N sing 114 n n N3 H24 B3N sing 115 n n O4 H25 B3N sing 116 n n # _atom_sites.entry_id 4QA4 _atom_sites.fract_transf_matrix[1][1] 0.012397 _atom_sites.fract_transf_matrix[1][2] 0.007157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B3N A 1 501 501 B3N B3N . C 3 ZN A 1 502 502 ZN ZN . D 4 K A 1 503 503 K K . E 4 K A 1 504 504 K K . F 5 GOL A 1 505 505 GOL GOL . G 5 GOL A 1 506 506 GOL GOL . H 5 GOL A 1 507 507 GOL GOL . I 6 HOH A 1 601 601 HOH HOH . I 6 HOH A 2 602 602 HOH HOH . I 6 HOH A 3 603 603 HOH HOH . I 6 HOH A 4 604 604 HOH HOH . I 6 HOH A 5 605 605 HOH HOH . I 6 HOH A 6 606 606 HOH HOH . I 6 HOH A 7 607 607 HOH HOH . I 6 HOH A 8 608 608 HOH HOH . I 6 HOH A 9 609 609 HOH HOH . I 6 HOH A 10 610 610 HOH HOH . I 6 HOH A 11 611 611 HOH HOH . I 6 HOH A 12 612 612 HOH HOH . I 6 HOH A 13 613 613 HOH HOH . I 6 HOH A 14 614 614 HOH HOH . I 6 HOH A 15 615 615 HOH HOH . I 6 HOH A 16 616 616 HOH HOH . I 6 HOH A 17 617 617 HOH HOH . I 6 HOH A 18 618 618 HOH HOH . I 6 HOH A 19 619 619 HOH HOH . I 6 HOH A 20 620 620 HOH HOH . I 6 HOH A 21 621 621 HOH HOH . I 6 HOH A 22 622 622 HOH HOH . I 6 HOH A 23 623 623 HOH HOH . I 6 HOH A 24 624 624 HOH HOH . I 6 HOH A 25 625 625 HOH HOH . I 6 HOH A 26 626 626 HOH HOH . I 6 HOH A 27 627 627 HOH HOH . I 6 HOH A 28 628 628 HOH HOH . I 6 HOH A 29 629 629 HOH HOH . I 6 HOH A 30 630 630 HOH HOH . I 6 HOH A 31 631 631 HOH HOH . I 6 HOH A 32 632 632 HOH HOH . I 6 HOH A 33 633 633 HOH HOH . I 6 HOH A 34 634 634 HOH HOH . I 6 HOH A 35 635 635 HOH HOH . I 6 HOH A 36 636 636 HOH HOH . I 6 HOH A 37 637 637 HOH HOH . I 6 HOH A 38 638 638 HOH HOH . I 6 HOH A 39 639 639 HOH HOH . I 6 HOH A 40 640 640 HOH HOH . I 6 HOH A 41 641 641 HOH HOH . I 6 HOH A 42 642 642 HOH HOH . I 6 HOH A 43 643 643 HOH HOH . I 6 HOH A 44 644 644 HOH HOH . I 6 HOH A 45 645 645 HOH HOH . I 6 HOH A 46 646 646 HOH HOH . I 6 HOH A 47 647 647 HOH HOH . I 6 HOH A 48 648 648 HOH HOH . I 6 HOH A 49 649 649 HOH HOH . I 6 HOH A 50 650 650 HOH HOH . I 6 HOH A 51 651 651 HOH HOH . I 6 HOH A 52 652 652 HOH HOH . I 6 HOH A 53 653 653 HOH HOH . I 6 HOH A 54 654 654 HOH HOH . I 6 HOH A 55 655 655 HOH HOH . I 6 HOH A 56 656 656 HOH HOH . I 6 HOH A 57 657 657 HOH HOH . I 6 HOH A 58 658 658 HOH HOH . I 6 HOH A 59 659 659 HOH HOH . I 6 HOH A 60 660 660 HOH HOH . I 6 HOH A 61 661 661 HOH HOH . I 6 HOH A 62 662 662 HOH HOH . I 6 HOH A 63 663 663 HOH HOH . I 6 HOH A 64 664 664 HOH HOH . I 6 HOH A 65 665 665 HOH HOH . I 6 HOH A 66 666 666 HOH HOH . I 6 HOH A 67 667 667 HOH HOH . I 6 HOH A 68 668 668 HOH HOH . I 6 HOH A 69 669 669 HOH HOH . I 6 HOH A 70 670 670 HOH HOH . I 6 HOH A 71 671 671 HOH HOH . I 6 HOH A 72 672 672 HOH HOH . I 6 HOH A 73 673 673 HOH HOH . I 6 HOH A 74 674 674 HOH HOH . I 6 HOH A 75 675 675 HOH HOH . I 6 HOH A 76 676 676 HOH HOH . I 6 HOH A 77 677 677 HOH HOH . I 6 HOH A 78 678 678 HOH HOH . I 6 HOH A 79 679 679 HOH HOH . I 6 HOH A 80 680 680 HOH HOH . I 6 HOH A 81 681 681 HOH HOH . I 6 HOH A 82 682 682 HOH HOH . I 6 HOH A 83 683 683 HOH HOH . I 6 HOH A 84 684 684 HOH HOH . I 6 HOH A 85 685 685 HOH HOH . I 6 HOH A 86 686 686 HOH HOH . I 6 HOH A 87 687 687 HOH HOH . I 6 HOH A 88 688 688 HOH HOH . I 6 HOH A 89 689 689 HOH HOH . I 6 HOH A 90 690 690 HOH HOH . I 6 HOH A 91 691 691 HOH HOH . I 6 HOH A 92 692 692 HOH HOH . I 6 HOH A 93 693 693 HOH HOH . I 6 HOH A 94 694 694 HOH HOH . I 6 HOH A 95 695 695 HOH HOH . I 6 HOH A 96 696 696 HOH HOH . I 6 HOH A 97 697 697 HOH HOH . I 6 HOH A 98 698 698 HOH HOH . I 6 HOH A 99 699 699 HOH HOH . I 6 HOH A 100 700 700 HOH HOH . I 6 HOH A 101 701 701 HOH HOH . I 6 HOH A 102 702 702 HOH HOH . I 6 HOH A 103 703 703 HOH HOH . I 6 HOH A 104 704 704 HOH HOH . I 6 HOH A 105 705 705 HOH HOH . I 6 HOH A 106 706 706 HOH HOH . I 6 HOH A 107 707 707 HOH HOH . I 6 HOH A 108 708 708 HOH HOH . I 6 HOH A 109 709 709 HOH HOH . I 6 HOH A 110 710 710 HOH HOH . I 6 HOH A 111 711 711 HOH HOH . I 6 HOH A 112 712 712 HOH HOH . I 6 HOH A 113 713 713 HOH HOH . I 6 HOH A 114 714 714 HOH HOH . I 6 HOH A 115 715 715 HOH HOH . I 6 HOH A 116 716 716 HOH HOH . I 6 HOH A 117 717 717 HOH HOH . I 6 HOH A 118 718 718 HOH HOH . I 6 HOH A 119 719 719 HOH HOH . I 6 HOH A 120 720 720 HOH HOH . I 6 HOH A 121 721 721 HOH HOH . I 6 HOH A 122 722 722 HOH HOH . I 6 HOH A 123 723 723 HOH HOH . I 6 HOH A 124 724 724 HOH HOH . I 6 HOH A 125 725 725 HOH HOH . I 6 HOH A 126 726 726 HOH HOH . I 6 HOH A 127 727 727 HOH HOH . I 6 HOH A 128 728 728 HOH HOH . I 6 HOH A 129 729 729 HOH HOH . I 6 HOH A 130 730 730 HOH HOH . I 6 HOH A 131 731 731 HOH HOH . I 6 HOH A 132 732 732 HOH HOH . I 6 HOH A 133 733 733 HOH HOH . I 6 HOH A 134 734 734 HOH HOH . I 6 HOH A 135 735 735 HOH HOH . I 6 HOH A 136 736 736 HOH HOH . I 6 HOH A 137 737 737 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 B3N . . . B 2 -10.218 25.773 -33.722 1 50.87 ? O23 B3N 501 A 1 HETATM 2 C C13 B3N . . . B 2 -10.536 26.881 -34.123 1 52.69 ? C13 B3N 501 A 1 HETATM 3 C C14 B3N . . . B 2 -11.576 26.997 -35.198 1 45.82 ? C14 B3N 501 A 1 HETATM 4 C C15 B3N . . . B 2 -11.97 28.242 -35.68 1 49.04 ? C15 B3N 501 A 1 HETATM 5 C C16 B3N . . . B 2 -12.936 28.32 -36.68 1 54.88 ? C16 B3N 501 A 1 HETATM 6 C C17 B3N . . . B 2 -13.506 27.159 -37.196 1 53.37 ? C17 B3N 501 A 1 HETATM 7 N N20 B3N . . . B 2 -14.449 27.222 -38.171 1 59.74 ? N20 B3N 501 A 1 HETATM 8 C C22 B3N . . . B 2 -14.885 28.505 -38.695 1 58.14 ? C22 B3N 501 A 1 HETATM 9 C C21 B3N . . . B 2 -15.035 25.998 -38.696 1 59.29 ? C21 B3N 501 A 1 HETATM 10 C C18 B3N . . . B 2 -13.108 25.922 -36.71 1 56.08 ? C18 B3N 501 A 1 HETATM 11 C C19 B3N . . . B 2 -12.144 25.841 -35.714 1 57.05 ? C19 B3N 501 A 1 HETATM 12 N N12 B3N . . . B 2 -9.99 27.979 -33.613 1 42.6 ? N12 B3N 501 A 1 HETATM 13 C C10 B3N . . . B 2 -8.971 28.007 -32.576 1 46.09 ? C10 B3N 501 A 1 HETATM 14 C C9 B3N . . . B 2 -9.7 28.434 -31.305 1 49.36 ? C9 B3N 501 A 1 HETATM 15 C C8 B3N . . . B 2 -10.507 27.276 -30.716 1 45.03 ? C8 B3N 501 A 1 HETATM 16 C C7 B3N . . . B 2 -10.999 27.635 -29.322 1 42.95 ? C7 B3N 501 A 1 HETATM 17 C C6 B3N . . . B 2 -11.712 26.476 -28.625 1 40.64 ? C6 B3N 501 A 1 HETATM 18 C C5 B3N . . . B 2 -12.425 27.029 -27.399 1 42.78 ? C5 B3N 501 A 1 HETATM 19 C C1 B3N . . . B 2 -12.776 25.94 -26.418 1 39.72 ? C1 B3N 501 A 1 HETATM 20 O O2 B3N . . . B 2 -13.675 25.151 -26.656 1 42.96 ? O2 B3N 501 A 1 HETATM 21 N N3 B3N . . . B 2 -12.065 25.921 -25.298 1 33.15 ? N3 B3N 501 A 1 HETATM 22 O O4 B3N . . . B 2 -12.303 24.974 -24.311 1 38.15 ? O4 B3N 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #