data_4QA7 # _model_server_result.job_id Kmp_mcOF2rDxJNWIDS4iHg _model_server_result.datetime_utc '2024-11-13 06:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qa7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 4QA7 # _exptl.entry_id 4QA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QA7 _cell.length_a 80.406 _cell.length_b 80.406 _cell.length_c 106.063 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 501 1_555 B N ARG 2 B ARG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C HIS 3 B HIS 503 1_555 B N ALY 4 B ALY 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ALY 4 B ALY 504 1_555 B N ALY 5 B ALY 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C ALY 5 B ALY 505 1_555 F N MCM . B MCM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A O ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc3 A OD1 ASP 178 A ASP 178 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc14 C ZN ZN . A ZN 401 1_555 H O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc15 C ZN ZN . A ZN 401 1_555 B OH ALY 5 B ALY 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc16 E K K . A K 403 1_555 H O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc17 E K K . A K 403 1_555 H O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 4QA7 _atom_sites.fract_transf_matrix[1][1] 0.012437 _atom_sites.fract_transf_matrix[1][2] 0.00718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 4 K A 1 402 411 K K . E 4 K A 1 403 412 K K . F 5 MCM B 1 601 506 MCM MCM . G 6 GOL B 1 602 201 GOL GOL . H 7 HOH A 1 501 1 HOH HOH . H 7 HOH A 2 502 2 HOH HOH . H 7 HOH A 3 503 3 HOH HOH . H 7 HOH A 4 504 4 HOH HOH . H 7 HOH A 5 505 5 HOH HOH . H 7 HOH A 6 506 6 HOH HOH . H 7 HOH A 7 507 7 HOH HOH . H 7 HOH A 8 508 8 HOH HOH . H 7 HOH A 9 509 9 HOH HOH . H 7 HOH A 10 510 10 HOH HOH . H 7 HOH A 11 511 11 HOH HOH . H 7 HOH A 12 512 12 HOH HOH . H 7 HOH A 13 513 13 HOH HOH . H 7 HOH A 14 514 14 HOH HOH . H 7 HOH A 15 515 15 HOH HOH . H 7 HOH A 16 516 16 HOH HOH . H 7 HOH A 17 517 17 HOH HOH . H 7 HOH A 18 518 18 HOH HOH . H 7 HOH A 19 519 19 HOH HOH . H 7 HOH A 20 520 20 HOH HOH . H 7 HOH A 21 521 21 HOH HOH . H 7 HOH A 22 522 22 HOH HOH . H 7 HOH A 23 523 23 HOH HOH . H 7 HOH A 24 524 24 HOH HOH . H 7 HOH A 25 525 25 HOH HOH . H 7 HOH A 26 526 26 HOH HOH . H 7 HOH A 27 527 27 HOH HOH . H 7 HOH A 28 528 28 HOH HOH . H 7 HOH A 29 529 29 HOH HOH . H 7 HOH A 30 530 30 HOH HOH . H 7 HOH A 31 531 31 HOH HOH . H 7 HOH A 32 532 32 HOH HOH . H 7 HOH A 33 533 33 HOH HOH . H 7 HOH A 34 534 34 HOH HOH . H 7 HOH A 35 535 36 HOH HOH . H 7 HOH A 36 536 37 HOH HOH . H 7 HOH A 37 537 39 HOH HOH . H 7 HOH A 38 538 40 HOH HOH . H 7 HOH A 39 539 41 HOH HOH . H 7 HOH A 40 540 42 HOH HOH . H 7 HOH A 41 541 43 HOH HOH . H 7 HOH A 42 542 44 HOH HOH . H 7 HOH A 43 543 45 HOH HOH . H 7 HOH A 44 544 47 HOH HOH . H 7 HOH A 45 545 48 HOH HOH . H 7 HOH A 46 546 49 HOH HOH . I 7 HOH B 1 701 35 HOH HOH . I 7 HOH B 2 702 38 HOH HOH . I 7 HOH B 3 703 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -27.024 18.317 8.881 1 65.68 ? C1 GOL 602 B 1 HETATM 2 O O1 GOL . . . G 6 -27.576 17.985 7.626 1 62.38 ? O1 GOL 602 B 1 HETATM 3 C C2 GOL . . . G 6 -26.284 17.11 9.444 1 70.32 ? C2 GOL 602 B 1 HETATM 4 O O2 GOL . . . G 6 -25.949 16.231 8.395 1 73.43 ? O2 GOL 602 B 1 HETATM 5 C C3 GOL . . . G 6 -25.01 17.569 10.144 1 62.68 ? C3 GOL 602 B 1 HETATM 6 O O3 GOL . . . G 6 -25.35 18.364 11.259 1 64.52 ? O3 GOL 602 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #