data_4QAB # _model_server_result.job_id 6qkChgSsJOkHOxWNG3DXCA _model_server_result.datetime_utc '2024-11-17 22:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 4QAB # _exptl.entry_id 4QAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.301 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(morpholin-4-yl)-6-[4-(trifluoromethyl)phenyl]pyrimidin-2-amine _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QAB _cell.length_a 122.639 _cell.length_b 134.015 _cell.length_c 147.02 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,NA,OA,PA,QA,RA 1 1 F,G,H,I,J,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,SA,TA,UA,VA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 N N N ? 2 P N N ? 2 S N N ? 2 V N N ? 2 Z N N ? 2 BA N N ? 2 EA N N ? 2 HA N N ? 2 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 A CYS 123 1_555 A SG CYS 144 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? disulf ? disulf2 A SG CYS 195 A CYS 187 1_555 A SG CYS 196 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 131 B CYS 123 1_555 B SG CYS 144 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? disulf ? disulf4 B SG CYS 195 B CYS 187 1_555 B SG CYS 196 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 C SG CYS 131 C CYS 123 1_555 C SG CYS 144 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? disulf ? disulf6 C SG CYS 195 C CYS 187 1_555 C SG CYS 196 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 D SG CYS 131 D CYS 123 1_555 D SG CYS 144 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? disulf ? disulf8 D SG CYS 195 D CYS 187 1_555 D SG CYS 196 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf9 E SG CYS 131 E CYS 123 1_555 E SG CYS 144 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? disulf ? disulf10 E SG CYS 195 E CYS 187 1_555 E SG CYS 196 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf11 F SG CYS 131 F CYS 123 1_555 F SG CYS 144 F CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? disulf ? disulf12 F SG CYS 195 F CYS 187 1_555 F SG CYS 196 F CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 G SG CYS 131 G CYS 123 1_555 G SG CYS 144 G CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? disulf ? disulf14 G SG CYS 195 G CYS 187 1_555 G SG CYS 196 G CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf15 H SG CYS 131 H CYS 123 1_555 H SG CYS 144 H CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? disulf ? disulf16 H SG CYS 195 H CYS 187 1_555 H SG CYS 196 H CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf17 I SG CYS 131 I CYS 123 1_555 I SG CYS 144 I CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? disulf ? disulf18 I SG CYS 195 I CYS 187 1_555 I SG CYS 196 I CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf19 J SG CYS 131 J CYS 123 1_555 J SG CYS 144 J CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? disulf ? disulf20 J SG CYS 195 J CYS 187 1_555 J SG CYS 196 J CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 74 A ASN 66 1_555 L C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 74 B ASN 66 1_555 O C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C ND2 ASN 74 C ASN 66 1_555 Q C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 D ND2 ASN 74 D ASN 66 1_555 T C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 E ND2 ASN 74 E ASN 66 1_555 W C1 NAG . E NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 G ND2 ASN 74 G ASN 66 1_555 CA C1 NAG . G NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.652 ? covale ? covale7 H ND2 ASN 74 H ASN 66 1_555 FA C1 NAG . H NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale8 I ND2 ASN 74 I ASN 66 1_555 IA C1 NAG . I NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale9 J ND2 ASN 74 J ASN 66 1_555 LA C1 NAG . J NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? # _chem_comp.formula 'C15 H15 F3 N4 O' _chem_comp.formula_weight 324.301 _chem_comp.id KK2 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(morpholin-4-yl)-6-[4-(trifluoromethyl)phenyl]pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 KK2 doub 173 n y C15 C9 KK2 sing 174 n y C14 C12 KK2 sing 175 n y C1 N2 KK2 sing 176 n n C1 C2 KK2 sing 177 n n F3 C13 KK2 sing 178 n n N2 C6 KK2 sing 179 n n N2 C4 KK2 sing 180 n n N1 C6 KK2 doub 181 n y N1 C7 KK2 sing 182 n y C6 C5 KK2 sing 183 n y N4 C7 KK2 sing 184 n n C7 N3 KK2 doub 185 n y C4 C3 KK2 sing 186 n n C5 C8 KK2 doub 187 n y N3 C8 KK2 sing 188 n y C8 C9 KK2 sing 189 n n C9 C10 KK2 doub 190 n y C12 C13 KK2 sing 191 n n C12 C11 KK2 doub 192 n y C13 F2 KK2 sing 193 n n C13 F1 KK2 sing 194 n n C2 O1 KK2 sing 195 n n O1 C3 KK2 sing 196 n n C10 C11 KK2 sing 197 n y C1 H1 KK2 sing 198 n n C1 H2 KK2 sing 199 n n C2 H3 KK2 sing 200 n n C2 H4 KK2 sing 201 n n C3 H5 KK2 sing 202 n n C3 H6 KK2 sing 203 n n C4 H7 KK2 sing 204 n n C4 H8 KK2 sing 205 n n C5 H9 KK2 sing 206 n n N4 H10 KK2 sing 207 n n N4 H11 KK2 sing 208 n n C10 H12 KK2 sing 209 n n C11 H13 KK2 sing 210 n n C14 H14 KK2 sing 211 n n C15 H15 KK2 sing 212 n n # _atom_sites.entry_id 4QAB _atom_sites.fract_transf_matrix[1][1] 0.008154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 KK2 A 1 301 1 KK2 KK2 . L 3 NAG A 1 302 1 NAG NAG . M 4 PO4 A 1 303 10 PO4 PO4 . N 2 KK2 B 1 301 2 KK2 KK2 . O 3 NAG B 1 302 2 NAG NAG . P 2 KK2 C 1 301 3 KK2 KK2 . Q 3 NAG C 1 302 3 NAG NAG . R 4 PO4 C 1 303 7 PO4 PO4 . S 2 KK2 D 1 301 4 KK2 KK2 . T 3 NAG D 1 302 4 NAG NAG . U 4 PO4 D 1 303 5 PO4 PO4 . V 2 KK2 E 1 301 5 KK2 KK2 . W 3 NAG E 1 302 5 NAG NAG . X 4 PO4 E 1 303 4 PO4 PO4 . Y 4 PO4 E 1 304 9 PO4 PO4 . Z 2 KK2 F 1 301 6 KK2 KK2 . AA 4 PO4 F 1 302 8 PO4 PO4 . BA 2 KK2 G 1 301 7 KK2 KK2 . CA 3 NAG G 1 302 7 NAG NAG . DA 4 PO4 G 1 303 3 PO4 PO4 . EA 2 KK2 H 1 301 8 KK2 KK2 . FA 3 NAG H 1 302 8 NAG NAG . GA 4 PO4 H 1 303 2 PO4 PO4 . HA 2 KK2 I 1 301 9 KK2 KK2 . IA 3 NAG I 1 302 6 NAG NAG . JA 4 PO4 I 1 303 1 PO4 PO4 . KA 2 KK2 J 1 301 10 KK2 KK2 . LA 3 NAG J 1 302 9 NAG NAG . MA 4 PO4 J 1 303 6 PO4 PO4 . NA 5 HOH A 1 401 1 HOH HOH . NA 5 HOH A 2 402 2 HOH HOH . NA 5 HOH A 3 403 3 HOH HOH . NA 5 HOH A 4 404 22 HOH HOH . NA 5 HOH A 5 405 23 HOH HOH . NA 5 HOH A 6 406 24 HOH HOH . OA 5 HOH B 1 401 5 HOH HOH . OA 5 HOH B 2 402 7 HOH HOH . OA 5 HOH B 3 403 8 HOH HOH . PA 5 HOH C 1 401 9 HOH HOH . QA 5 HOH D 1 401 10 HOH HOH . QA 5 HOH D 2 402 11 HOH HOH . QA 5 HOH D 3 403 26 HOH HOH . RA 5 HOH E 1 401 4 HOH HOH . RA 5 HOH E 2 402 25 HOH HOH . RA 5 HOH E 3 403 27 HOH HOH . RA 5 HOH E 4 404 28 HOH HOH . SA 5 HOH F 1 401 14 HOH HOH . SA 5 HOH F 2 402 21 HOH HOH . SA 5 HOH F 3 403 29 HOH HOH . TA 5 HOH G 1 401 15 HOH HOH . UA 5 HOH I 1 401 17 HOH HOH . UA 5 HOH I 2 402 30 HOH HOH . VA 5 HOH J 1 401 13 HOH HOH . VA 5 HOH J 2 402 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KK2 . . . K 2 -31.443 -5.413 -11.171 1 19.84 ? C1 KK2 301 A 1 HETATM 2 C C2 KK2 . . . K 2 -30.689 -5.942 -9.959 1 16.64 ? C2 KK2 301 A 1 HETATM 3 O O1 KK2 . . . K 2 -29.452 -5.313 -9.886 1 26.15 ? O1 KK2 301 A 1 HETATM 4 C C3 KK2 . . . K 2 -29.559 -3.938 -9.681 1 25.53 ? C3 KK2 301 A 1 HETATM 5 C C4 KK2 . . . K 2 -30.425 -3.267 -10.793 1 22.03 ? C4 KK2 301 A 1 HETATM 6 N N2 KK2 . . . K 2 -31.67 -3.996 -11.063 1 19.12 ? N2 KK2 301 A 1 HETATM 7 C C6 KK2 . . . K 2 -33.035 -3.556 -10.943 1 21.98 ? C6 KK2 301 A 1 HETATM 8 C C5 KK2 . . . K 2 -34.141 -4.445 -10.78 1 16.8 ? C5 KK2 301 A 1 HETATM 9 N N1 KK2 . . . K 2 -33.227 -2.197 -10.991 1 24.1 ? N1 KK2 301 A 1 HETATM 10 C C7 KK2 . . . K 2 -34.541 -1.786 -10.869 1 14.39 ? C7 KK2 301 A 1 HETATM 11 N N4 KK2 . . . K 2 -34.759 -0.449 -10.895 1 13.16 ? N4 KK2 301 A 1 HETATM 12 N N3 KK2 . . . K 2 -35.619 -2.557 -10.725 1 17.09 ? N3 KK2 301 A 1 HETATM 13 C C8 KK2 . . . K 2 -35.42 -3.887 -10.687 1 14.86 ? C8 KK2 301 A 1 HETATM 14 C C9 KK2 . . . K 2 -36.665 -4.622 -10.506 1 21.79 ? C9 KK2 301 A 1 HETATM 15 C C10 KK2 . . . K 2 -37.217 -4.851 -9.24 1 26.59 ? C10 KK2 301 A 1 HETATM 16 C C11 KK2 . . . K 2 -38.437 -5.514 -9.069 1 28.5 ? C11 KK2 301 A 1 HETATM 17 C C12 KK2 . . . K 2 -39.158 -5.948 -10.173 1 31.09 ? C12 KK2 301 A 1 HETATM 18 C C13 KK2 . . . K 2 -40.471 -6.657 -9.965 1 42.07 ? C13 KK2 301 A 1 HETATM 19 F F1 KK2 . . . K 2 -41.221 -6.117 -8.98 1 40.66 ? F1 KK2 301 A 1 HETATM 20 F F2 KK2 . . . K 2 -40.357 -7.961 -9.628 1 50.28 ? F2 KK2 301 A 1 HETATM 21 F F3 KK2 . . . K 2 -41.257 -6.702 -11.076 1 35.26 ? F3 KK2 301 A 1 HETATM 22 C C14 KK2 . . . K 2 -38.646 -5.713 -11.45 1 31 ? C14 KK2 301 A 1 HETATM 23 C C15 KK2 . . . K 2 -37.427 -5.048 -11.612 1 24.76 ? C15 KK2 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #