data_4QAB
#
_model_server_result.job_id            EjzwRUfPQka38nMG3RTgWA 
_model_server_result.datetime_utc      '2024-11-17 22:42:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qab 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":302}' 
#
_entry.id    4QAB 
#
_exptl.entry_id    4QAB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QAB 
_cell.length_a            122.639 
_cell.length_b            134.015 
_cell.length_c            147.02 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QAB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,NA,OA,PA,QA,RA 1 1 
F,G,H,I,J,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,SA,TA,UA,VA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 O N N 
? 3 Q N N 
? 3 T N N 
? 3 W N N 
? 3 CA N N 
? 3 FA N N 
? 3 IA N N 
? 3 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 131 A CYS 123 1_555 A SG CYS 144 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
disulf ? disulf2 A SG CYS 195 A CYS 187 1_555 A SG CYS 196 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 B SG CYS 131 B CYS 123 1_555 B SG CYS 144 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
disulf ? disulf4 B SG CYS 195 B CYS 187 1_555 B SG CYS 196 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf5 C SG CYS 131 C CYS 123 1_555 C SG CYS 144 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
disulf ? disulf6 C SG CYS 195 C CYS 187 1_555 C SG CYS 196 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf7 D SG CYS 131 D CYS 123 1_555 D SG CYS 144 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
disulf ? disulf8 D SG CYS 195 D CYS 187 1_555 D SG CYS 196 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf9 E SG CYS 131 E CYS 123 1_555 E SG CYS 144 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
disulf ? disulf10 E SG CYS 195 E CYS 187 1_555 E SG CYS 196 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf11 F SG CYS 131 F CYS 123 1_555 F SG CYS 144 F CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
disulf ? disulf12 F SG CYS 195 F CYS 187 1_555 F SG CYS 196 F CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf13 G SG CYS 131 G CYS 123 1_555 G SG CYS 144 G CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
disulf ? disulf14 G SG CYS 195 G CYS 187 1_555 G SG CYS 196 G CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf15 H SG CYS 131 H CYS 123 1_555 H SG CYS 144 H CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
disulf ? disulf16 H SG CYS 195 H CYS 187 1_555 H SG CYS 196 H CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf17 I SG CYS 131 I CYS 123 1_555 I SG CYS 144 I CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
disulf ? disulf18 I SG CYS 195 I CYS 187 1_555 I SG CYS 196 I CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf19 J SG CYS 131 J CYS 123 1_555 J SG CYS 144 J CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? 
disulf ? disulf20 J SG CYS 195 J CYS 187 1_555 J SG CYS 196 J CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 A ND2 ASN 74 A ASN 66 1_555 L C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 B ND2 ASN 74 B ASN 66 1_555 O C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 74 C ASN 66 1_555 Q C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale4 D ND2 ASN 74 D ASN 66 1_555 T C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 E ND2 ASN 74 E ASN 66 1_555 W C1 NAG . E NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale6 G ND2 ASN 74 G ASN 66 1_555 CA C1 NAG . G NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.652 ? 
covale ? covale7 H ND2 ASN 74 H ASN 66 1_555 FA C1 NAG . H NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? 
covale ? covale8 I ND2 ASN 74 I ASN 66 1_555 IA C1 NAG . I NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale9 J ND2 ASN 74 J ASN 66 1_555 LA C1 NAG . J NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 277 n n 
C1 O1 NAG sing 278 n n 
C1 O5 NAG sing 279 n n 
C1 H1 NAG sing 280 n n 
C2 C3 NAG sing 281 n n 
C2 N2 NAG sing 282 n n 
C2 H2 NAG sing 283 n n 
C3 C4 NAG sing 284 n n 
C3 O3 NAG sing 285 n n 
C3 H3 NAG sing 286 n n 
C4 C5 NAG sing 287 n n 
C4 O4 NAG sing 288 n n 
C4 H4 NAG sing 289 n n 
C5 C6 NAG sing 290 n n 
C5 O5 NAG sing 291 n n 
C5 H5 NAG sing 292 n n 
C6 O6 NAG sing 293 n n 
C6 H61 NAG sing 294 n n 
C6 H62 NAG sing 295 n n 
C7 C8 NAG sing 296 n n 
C7 N2 NAG sing 297 n n 
C7 O7 NAG doub 298 n n 
C8 H81 NAG sing 299 n n 
C8 H82 NAG sing 300 n n 
C8 H83 NAG sing 301 n n 
N2 HN2 NAG sing 302 n n 
O1 HO1 NAG sing 303 n n 
O3 HO3 NAG sing 304 n n 
O4 HO4 NAG sing 305 n n 
O6 HO6 NAG sing 306 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4QAB 
_atom_sites.fract_transf_matrix[1][1]    0.008154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 KK2 A 1 301 1 KK2 KK2 . 
L 3 NAG A 1 302 1 NAG NAG . 
M 4 PO4 A 1 303 10 PO4 PO4 . 
N 2 KK2 B 1 301 2 KK2 KK2 . 
O 3 NAG B 1 302 2 NAG NAG . 
P 2 KK2 C 1 301 3 KK2 KK2 . 
Q 3 NAG C 1 302 3 NAG NAG . 
R 4 PO4 C 1 303 7 PO4 PO4 . 
S 2 KK2 D 1 301 4 KK2 KK2 . 
T 3 NAG D 1 302 4 NAG NAG . 
U 4 PO4 D 1 303 5 PO4 PO4 . 
V 2 KK2 E 1 301 5 KK2 KK2 . 
W 3 NAG E 1 302 5 NAG NAG . 
X 4 PO4 E 1 303 4 PO4 PO4 . 
Y 4 PO4 E 1 304 9 PO4 PO4 . 
Z 2 KK2 F 1 301 6 KK2 KK2 . 
AA 4 PO4 F 1 302 8 PO4 PO4 . 
BA 2 KK2 G 1 301 7 KK2 KK2 . 
CA 3 NAG G 1 302 7 NAG NAG . 
DA 4 PO4 G 1 303 3 PO4 PO4 . 
EA 2 KK2 H 1 301 8 KK2 KK2 . 
FA 3 NAG H 1 302 8 NAG NAG . 
GA 4 PO4 H 1 303 2 PO4 PO4 . 
HA 2 KK2 I 1 301 9 KK2 KK2 . 
IA 3 NAG I 1 302 6 NAG NAG . 
JA 4 PO4 I 1 303 1 PO4 PO4 . 
KA 2 KK2 J 1 301 10 KK2 KK2 . 
LA 3 NAG J 1 302 9 NAG NAG . 
MA 4 PO4 J 1 303 6 PO4 PO4 . 
NA 5 HOH A 1 401 1 HOH HOH . 
NA 5 HOH A 2 402 2 HOH HOH . 
NA 5 HOH A 3 403 3 HOH HOH . 
NA 5 HOH A 4 404 22 HOH HOH . 
NA 5 HOH A 5 405 23 HOH HOH . 
NA 5 HOH A 6 406 24 HOH HOH . 
OA 5 HOH B 1 401 5 HOH HOH . 
OA 5 HOH B 2 402 7 HOH HOH . 
OA 5 HOH B 3 403 8 HOH HOH . 
PA 5 HOH C 1 401 9 HOH HOH . 
QA 5 HOH D 1 401 10 HOH HOH . 
QA 5 HOH D 2 402 11 HOH HOH . 
QA 5 HOH D 3 403 26 HOH HOH . 
RA 5 HOH E 1 401 4 HOH HOH . 
RA 5 HOH E 2 402 25 HOH HOH . 
RA 5 HOH E 3 403 27 HOH HOH . 
RA 5 HOH E 4 404 28 HOH HOH . 
SA 5 HOH F 1 401 14 HOH HOH . 
SA 5 HOH F 2 402 21 HOH HOH . 
SA 5 HOH F 3 403 29 HOH HOH . 
TA 5 HOH G 1 401 15 HOH HOH . 
UA 5 HOH I 1 401 17 HOH HOH . 
UA 5 HOH I 2 402 30 HOH HOH . 
VA 5 HOH J 1 401 13 HOH HOH . 
VA 5 HOH J 2 402 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . T 3 -67.577 -14.047 46.874 1 65.06 ? C1 NAG 302 D 1 
HETATM 2 C C2 NAG . . . T 3 -68.252 -12.791 47.423 1 69.25 ? C2 NAG 302 D 1 
HETATM 3 C C3 NAG . . . T 3 -69.77 -12.838 47.184 1 93.89 ? C3 NAG 302 D 1 
HETATM 4 C C4 NAG . . . T 3 -70.193 -14.166 46.53 1 91.98 ? C4 NAG 302 D 1 
HETATM 5 C C5 NAG . . . T 3 -69.578 -15.345 47.307 1 66.24 ? C5 NAG 302 D 1 
HETATM 6 C C6 NAG . . . T 3 -69.833 -16.708 46.662 1 70.68 ? C6 NAG 302 D 1 
HETATM 7 C C7 NAG . . . T 3 -67.089 -13.311 49.559 1 73.16 ? C7 NAG 302 D 1 
HETATM 8 C C8 NAG . . . T 3 -67.665 -14.309 50.526 1 53.77 ? C8 NAG 302 D 1 
HETATM 9 N N2 NAG . . . T 3 -67.962 -12.596 48.84 1 71.1 ? N2 NAG 302 D 1 
HETATM 10 O O3 NAG . . . T 3 -70.187 -11.714 46.422 1 83 ? O3 NAG 302 D 1 
HETATM 11 O O4 NAG . . . T 3 -71.607 -14.264 46.458 1 80.04 ? O4 NAG 302 D 1 
HETATM 12 O O5 NAG . . . T 3 -68.176 -15.202 47.456 1 64.33 ? O5 NAG 302 D 1 
HETATM 13 O O6 NAG . . . T 3 -69.092 -16.84 45.465 1 69.21 ? O6 NAG 302 D 1 
HETATM 14 O O7 NAG . . . T 3 -65.867 -13.162 49.471 1 62.02 ? O7 NAG 302 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#