data_4QAK # _model_server_result.job_id Pn_2AtQ6r2zkbVwhXFhqCw _model_server_result.datetime_utc '2024-11-23 22:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4QAK # _exptl.entry_id 4QAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QAK _cell.length_a 107.688 _cell.length_b 107.688 _cell.length_c 71.657 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 92 A GLY 91 1_555 A N MSE 93 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 93 A MSE 92 1_555 A N ARG 94 A ARG 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ASN 105 A ASN 104 1_555 A N MSE 106 A MSE 105 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C ASN 105 A ASN 104 1_555 A N MSE 106 A MSE 105 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C MSE 106 A MSE 105 1_555 A N LEU 107 A LEU 106 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 106 A MSE 105 1_555 A N LEU 107 A LEU 106 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C GLY 92 B GLY 91 1_555 B N MSE 93 B MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 B C MSE 93 B MSE 92 1_555 B N ARG 94 B ARG 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C ASN 105 B ASN 104 1_555 B N MSE 106 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 B C MSE 106 B MSE 105 1_555 B N LEU 107 B LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4QAK _atom_sites.fract_transf_matrix[1][1] 0.009286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 1 GOL GOL . D 2 GOL A 1 202 2 GOL GOL . E 2 GOL A 1 203 3 GOL GOL . F 3 2AM B 1 201 1 2AM 2AM . G 4 HOH A 1 301 23 HOH HOH . G 4 HOH A 2 302 24 HOH HOH . G 4 HOH A 3 303 25 HOH HOH . G 4 HOH A 4 304 26 HOH HOH . G 4 HOH A 5 305 27 HOH HOH . G 4 HOH A 6 306 28 HOH HOH . G 4 HOH A 7 307 29 HOH HOH . G 4 HOH A 8 308 30 HOH HOH . G 4 HOH A 9 309 31 HOH HOH . G 4 HOH A 10 310 38 HOH HOH . G 4 HOH A 11 311 39 HOH HOH . G 4 HOH A 12 312 40 HOH HOH . G 4 HOH A 13 313 59 HOH HOH . G 4 HOH A 14 314 60 HOH HOH . G 4 HOH A 15 315 61 HOH HOH . G 4 HOH A 16 316 62 HOH HOH . G 4 HOH A 17 317 63 HOH HOH . G 4 HOH A 18 318 64 HOH HOH . G 4 HOH A 19 319 65 HOH HOH . G 4 HOH A 20 320 66 HOH HOH . G 4 HOH A 21 321 67 HOH HOH . G 4 HOH A 22 322 68 HOH HOH . G 4 HOH A 23 323 69 HOH HOH . G 4 HOH A 24 324 70 HOH HOH . G 4 HOH A 25 325 71 HOH HOH . G 4 HOH A 26 326 72 HOH HOH . G 4 HOH A 27 327 73 HOH HOH . G 4 HOH A 28 328 74 HOH HOH . G 4 HOH A 29 329 75 HOH HOH . G 4 HOH A 30 330 76 HOH HOH . G 4 HOH A 31 331 77 HOH HOH . G 4 HOH A 32 332 80 HOH HOH . G 4 HOH A 33 333 85 HOH HOH . G 4 HOH A 34 334 87 HOH HOH . G 4 HOH A 35 335 88 HOH HOH . G 4 HOH A 36 336 90 HOH HOH . G 4 HOH A 37 337 91 HOH HOH . G 4 HOH A 38 338 95 HOH HOH . G 4 HOH A 39 339 100 HOH HOH . G 4 HOH A 40 340 102 HOH HOH . G 4 HOH A 41 341 105 HOH HOH . G 4 HOH A 42 342 106 HOH HOH . G 4 HOH A 43 343 107 HOH HOH . G 4 HOH A 44 344 108 HOH HOH . G 4 HOH A 45 345 109 HOH HOH . G 4 HOH A 46 346 110 HOH HOH . G 4 HOH A 47 347 112 HOH HOH . G 4 HOH A 48 348 123 HOH HOH . G 4 HOH A 49 349 128 HOH HOH . G 4 HOH A 50 350 129 HOH HOH . G 4 HOH A 51 351 131 HOH HOH . G 4 HOH A 52 352 132 HOH HOH . G 4 HOH A 53 353 136 HOH HOH . G 4 HOH A 54 354 139 HOH HOH . G 4 HOH A 55 355 140 HOH HOH . G 4 HOH A 56 356 145 HOH HOH . G 4 HOH A 57 357 146 HOH HOH . G 4 HOH A 58 358 148 HOH HOH . G 4 HOH A 59 359 149 HOH HOH . G 4 HOH A 60 360 153 HOH HOH . G 4 HOH A 61 361 156 HOH HOH . G 4 HOH A 62 362 157 HOH HOH . G 4 HOH A 63 363 158 HOH HOH . G 4 HOH A 64 364 165 HOH HOH . G 4 HOH A 65 365 169 HOH HOH . G 4 HOH A 66 366 175 HOH HOH . G 4 HOH A 67 367 178 HOH HOH . G 4 HOH A 68 368 180 HOH HOH . G 4 HOH A 69 369 181 HOH HOH . G 4 HOH A 70 370 182 HOH HOH . G 4 HOH A 71 371 189 HOH HOH . G 4 HOH A 72 372 193 HOH HOH . G 4 HOH A 73 373 195 HOH HOH . G 4 HOH A 74 374 196 HOH HOH . G 4 HOH A 75 375 199 HOH HOH . G 4 HOH A 76 376 202 HOH HOH . G 4 HOH A 77 377 203 HOH HOH . G 4 HOH A 78 378 206 HOH HOH . G 4 HOH A 79 379 207 HOH HOH . G 4 HOH A 80 380 208 HOH HOH . G 4 HOH A 81 381 210 HOH HOH . G 4 HOH A 82 382 212 HOH HOH . G 4 HOH A 83 383 213 HOH HOH . G 4 HOH A 84 384 215 HOH HOH . G 4 HOH A 85 385 219 HOH HOH . G 4 HOH A 86 386 224 HOH HOH . G 4 HOH A 87 387 225 HOH HOH . G 4 HOH A 88 388 226 HOH HOH . G 4 HOH A 89 389 227 HOH HOH . G 4 HOH A 90 390 228 HOH HOH . G 4 HOH A 91 391 229 HOH HOH . G 4 HOH A 92 392 230 HOH HOH . G 4 HOH A 93 393 237 HOH HOH . G 4 HOH A 94 394 238 HOH HOH . G 4 HOH A 95 395 239 HOH HOH . G 4 HOH A 96 396 240 HOH HOH . G 4 HOH A 97 397 243 HOH HOH . G 4 HOH A 98 398 247 HOH HOH . G 4 HOH A 99 399 252 HOH HOH . G 4 HOH A 100 400 254 HOH HOH . G 4 HOH A 101 401 255 HOH HOH . G 4 HOH A 102 402 257 HOH HOH . G 4 HOH A 103 403 261 HOH HOH . G 4 HOH A 104 404 262 HOH HOH . G 4 HOH A 105 405 267 HOH HOH . G 4 HOH A 106 406 270 HOH HOH . G 4 HOH A 107 407 271 HOH HOH . G 4 HOH A 108 408 272 HOH HOH . G 4 HOH A 109 409 273 HOH HOH . G 4 HOH A 110 410 276 HOH HOH . G 4 HOH A 111 411 279 HOH HOH . G 4 HOH A 112 412 282 HOH HOH . G 4 HOH A 113 413 283 HOH HOH . G 4 HOH A 114 414 294 HOH HOH . G 4 HOH A 115 415 297 HOH HOH . G 4 HOH A 116 416 299 HOH HOH . G 4 HOH A 117 417 304 HOH HOH . G 4 HOH A 118 418 306 HOH HOH . H 4 HOH B 1 301 1 HOH HOH . H 4 HOH B 2 302 2 HOH HOH . H 4 HOH B 3 303 3 HOH HOH . H 4 HOH B 4 304 4 HOH HOH . H 4 HOH B 5 305 5 HOH HOH . H 4 HOH B 6 306 6 HOH HOH . H 4 HOH B 7 307 7 HOH HOH . H 4 HOH B 8 308 8 HOH HOH . H 4 HOH B 9 309 9 HOH HOH . H 4 HOH B 10 310 10 HOH HOH . H 4 HOH B 11 311 11 HOH HOH . H 4 HOH B 12 312 12 HOH HOH . H 4 HOH B 13 313 13 HOH HOH . H 4 HOH B 14 314 14 HOH HOH . H 4 HOH B 15 315 15 HOH HOH . H 4 HOH B 16 316 16 HOH HOH . H 4 HOH B 17 317 17 HOH HOH . H 4 HOH B 18 318 20 HOH HOH . H 4 HOH B 19 319 21 HOH HOH . H 4 HOH B 20 320 22 HOH HOH . H 4 HOH B 21 321 32 HOH HOH . H 4 HOH B 22 322 33 HOH HOH . H 4 HOH B 23 323 34 HOH HOH . H 4 HOH B 24 324 35 HOH HOH . H 4 HOH B 25 325 41 HOH HOH . H 4 HOH B 26 326 43 HOH HOH . H 4 HOH B 27 327 44 HOH HOH . H 4 HOH B 28 328 45 HOH HOH . H 4 HOH B 29 329 46 HOH HOH . H 4 HOH B 30 330 47 HOH HOH . H 4 HOH B 31 331 48 HOH HOH . H 4 HOH B 32 332 49 HOH HOH . H 4 HOH B 33 333 50 HOH HOH . H 4 HOH B 34 334 51 HOH HOH . H 4 HOH B 35 335 52 HOH HOH . H 4 HOH B 36 336 53 HOH HOH . H 4 HOH B 37 337 54 HOH HOH . H 4 HOH B 38 338 55 HOH HOH . H 4 HOH B 39 339 56 HOH HOH . H 4 HOH B 40 340 57 HOH HOH . H 4 HOH B 41 341 78 HOH HOH . H 4 HOH B 42 342 79 HOH HOH . H 4 HOH B 43 343 81 HOH HOH . H 4 HOH B 44 344 82 HOH HOH . H 4 HOH B 45 345 83 HOH HOH . H 4 HOH B 46 346 84 HOH HOH . H 4 HOH B 47 347 86 HOH HOH . H 4 HOH B 48 348 89 HOH HOH . H 4 HOH B 49 349 92 HOH HOH . H 4 HOH B 50 350 93 HOH HOH . H 4 HOH B 51 351 94 HOH HOH . H 4 HOH B 52 352 96 HOH HOH . H 4 HOH B 53 353 97 HOH HOH . H 4 HOH B 54 354 99 HOH HOH . H 4 HOH B 55 355 101 HOH HOH . H 4 HOH B 56 356 103 HOH HOH . H 4 HOH B 57 357 104 HOH HOH . H 4 HOH B 58 358 111 HOH HOH . H 4 HOH B 59 359 113 HOH HOH . H 4 HOH B 60 360 114 HOH HOH . H 4 HOH B 61 361 115 HOH HOH . H 4 HOH B 62 362 116 HOH HOH . H 4 HOH B 63 363 117 HOH HOH . H 4 HOH B 64 364 118 HOH HOH . H 4 HOH B 65 365 120 HOH HOH . H 4 HOH B 66 366 121 HOH HOH . H 4 HOH B 67 367 122 HOH HOH . H 4 HOH B 68 368 124 HOH HOH . H 4 HOH B 69 369 125 HOH HOH . H 4 HOH B 70 370 126 HOH HOH . H 4 HOH B 71 371 127 HOH HOH . H 4 HOH B 72 372 130 HOH HOH . H 4 HOH B 73 373 134 HOH HOH . H 4 HOH B 74 374 135 HOH HOH . H 4 HOH B 75 375 137 HOH HOH . H 4 HOH B 76 376 141 HOH HOH . H 4 HOH B 77 377 143 HOH HOH . H 4 HOH B 78 378 150 HOH HOH . H 4 HOH B 79 379 151 HOH HOH . H 4 HOH B 80 380 152 HOH HOH . H 4 HOH B 81 381 154 HOH HOH . H 4 HOH B 82 382 155 HOH HOH . H 4 HOH B 83 383 159 HOH HOH . H 4 HOH B 84 384 161 HOH HOH . H 4 HOH B 85 385 162 HOH HOH . H 4 HOH B 86 386 164 HOH HOH . H 4 HOH B 87 387 166 HOH HOH . H 4 HOH B 88 388 168 HOH HOH . H 4 HOH B 89 389 170 HOH HOH . H 4 HOH B 90 390 171 HOH HOH . H 4 HOH B 91 391 172 HOH HOH . H 4 HOH B 92 392 173 HOH HOH . H 4 HOH B 93 393 174 HOH HOH . H 4 HOH B 94 394 176 HOH HOH . H 4 HOH B 95 395 179 HOH HOH . H 4 HOH B 96 396 183 HOH HOH . H 4 HOH B 97 397 184 HOH HOH . H 4 HOH B 98 398 185 HOH HOH . H 4 HOH B 99 399 186 HOH HOH . H 4 HOH B 100 400 187 HOH HOH . H 4 HOH B 101 401 188 HOH HOH . H 4 HOH B 102 402 192 HOH HOH . H 4 HOH B 103 403 194 HOH HOH . H 4 HOH B 104 404 197 HOH HOH . H 4 HOH B 105 405 201 HOH HOH . H 4 HOH B 106 406 204 HOH HOH . H 4 HOH B 107 407 211 HOH HOH . H 4 HOH B 108 408 214 HOH HOH . H 4 HOH B 109 409 217 HOH HOH . H 4 HOH B 110 410 221 HOH HOH . H 4 HOH B 111 411 223 HOH HOH . H 4 HOH B 112 412 231 HOH HOH . H 4 HOH B 113 413 232 HOH HOH . H 4 HOH B 114 414 235 HOH HOH . H 4 HOH B 115 415 241 HOH HOH . H 4 HOH B 116 416 244 HOH HOH . H 4 HOH B 117 417 248 HOH HOH . H 4 HOH B 118 418 249 HOH HOH . H 4 HOH B 119 419 250 HOH HOH . H 4 HOH B 120 420 251 HOH HOH . H 4 HOH B 121 421 256 HOH HOH . H 4 HOH B 122 422 258 HOH HOH . H 4 HOH B 123 423 259 HOH HOH . H 4 HOH B 124 424 260 HOH HOH . H 4 HOH B 125 425 263 HOH HOH . H 4 HOH B 126 426 264 HOH HOH . H 4 HOH B 127 427 265 HOH HOH . H 4 HOH B 128 428 268 HOH HOH . H 4 HOH B 129 429 274 HOH HOH . H 4 HOH B 130 430 275 HOH HOH . H 4 HOH B 131 431 278 HOH HOH . H 4 HOH B 132 432 285 HOH HOH . H 4 HOH B 133 433 286 HOH HOH . H 4 HOH B 134 434 289 HOH HOH . H 4 HOH B 135 435 292 HOH HOH . H 4 HOH B 136 436 295 HOH HOH . H 4 HOH B 137 437 296 HOH HOH . H 4 HOH B 138 438 300 HOH HOH . H 4 HOH B 139 439 301 HOH HOH . H 4 HOH B 140 440 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 6.044 25.19 12.603 1 49.69 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 2 4.822 24.595 12.221 1 56.24 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 2 5.98 26.669 12.274 1 44.77 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 2 4.829 27.238 12.845 1 40.85 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 2 7.182 27.405 12.835 1 36.19 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 2 7.201 28.628 12.147 1 26.17 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #