data_4QAO # _model_server_result.job_id WT5p6nZPYmkcX_YfPUlwyg _model_server_result.datetime_utc '2024-10-14 08:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4QAO # _exptl.entry_id 4QAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QAO _cell.length_a 105.96 _cell.length_b 105.96 _cell.length_c 149.95 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1,2 B,E,H 2 1,3 C,F,I 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 105.96 0 3 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 52.98 52.98 74.975 4 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 149.95 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 78 1_555 A SG CYS 81 A CYS 78 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 B SG CYS 81 B CYS 78 1_555 B SG CYS 81 B CYS 78 16_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc2 A NZ LYS 76 A LYS 73 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 B NE2 HIS 21 B HIS 18 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 B NZ LYS 76 B LYS 73 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 C NE2 HIS 21 C HIS 18 1_555 F FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc6 C NZ LYS 76 C LYS 73 1_555 F FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4QAO _atom_sites.fract_transf_matrix[1][1] 0.009438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 201 105 HEM HEM . E 2 HEM B 1 201 105 HEM HEM . F 2 HEM C 1 201 105 HEM HEM . G 3 HOH A 1 301 7 HOH HOH . G 3 HOH A 2 302 9 HOH HOH . G 3 HOH A 3 303 10 HOH HOH . G 3 HOH A 4 304 12 HOH HOH . G 3 HOH A 5 305 13 HOH HOH . G 3 HOH A 6 306 23 HOH HOH . G 3 HOH A 7 307 28 HOH HOH . G 3 HOH A 8 308 32 HOH HOH . G 3 HOH A 9 309 34 HOH HOH . G 3 HOH A 10 310 36 HOH HOH . G 3 HOH A 11 311 38 HOH HOH . G 3 HOH A 12 312 41 HOH HOH . G 3 HOH A 13 313 42 HOH HOH . G 3 HOH A 14 314 46 HOH HOH . G 3 HOH A 15 315 50 HOH HOH . G 3 HOH A 16 316 51 HOH HOH . G 3 HOH A 17 317 54 HOH HOH . G 3 HOH A 18 318 59 HOH HOH . G 3 HOH A 19 319 67 HOH HOH . G 3 HOH A 20 320 71 HOH HOH . G 3 HOH A 21 321 79 HOH HOH . G 3 HOH A 22 322 80 HOH HOH . G 3 HOH A 23 323 82 HOH HOH . G 3 HOH A 24 324 86 HOH HOH . G 3 HOH A 25 325 87 HOH HOH . G 3 HOH A 26 326 102 HOH HOH . G 3 HOH A 27 327 104 HOH HOH . G 3 HOH A 28 328 107 HOH HOH . G 3 HOH A 29 329 111 HOH HOH . G 3 HOH A 30 330 115 HOH HOH . G 3 HOH A 31 331 116 HOH HOH . G 3 HOH A 32 332 125 HOH HOH . H 3 HOH B 1 301 6 HOH HOH . H 3 HOH B 2 302 11 HOH HOH . H 3 HOH B 3 303 14 HOH HOH . H 3 HOH B 4 304 21 HOH HOH . H 3 HOH B 5 305 25 HOH HOH . H 3 HOH B 6 306 27 HOH HOH . H 3 HOH B 7 307 30 HOH HOH . H 3 HOH B 8 308 39 HOH HOH . H 3 HOH B 9 309 40 HOH HOH . H 3 HOH B 10 310 44 HOH HOH . H 3 HOH B 11 311 47 HOH HOH . H 3 HOH B 12 312 52 HOH HOH . H 3 HOH B 13 313 56 HOH HOH . H 3 HOH B 14 314 68 HOH HOH . H 3 HOH B 15 315 69 HOH HOH . H 3 HOH B 16 316 70 HOH HOH . H 3 HOH B 17 317 74 HOH HOH . H 3 HOH B 18 318 76 HOH HOH . H 3 HOH B 19 319 77 HOH HOH . H 3 HOH B 20 320 124 HOH HOH . I 3 HOH C 1 301 1 HOH HOH . I 3 HOH C 2 302 2 HOH HOH . I 3 HOH C 3 303 3 HOH HOH . I 3 HOH C 4 304 4 HOH HOH . I 3 HOH C 5 305 5 HOH HOH . I 3 HOH C 6 306 8 HOH HOH . I 3 HOH C 7 307 17 HOH HOH . I 3 HOH C 8 308 18 HOH HOH . I 3 HOH C 9 309 20 HOH HOH . I 3 HOH C 10 310 22 HOH HOH . I 3 HOH C 11 311 24 HOH HOH . I 3 HOH C 12 312 26 HOH HOH . I 3 HOH C 13 313 29 HOH HOH . I 3 HOH C 14 314 33 HOH HOH . I 3 HOH C 15 315 37 HOH HOH . I 3 HOH C 16 316 43 HOH HOH . I 3 HOH C 17 317 45 HOH HOH . I 3 HOH C 18 318 48 HOH HOH . I 3 HOH C 19 319 53 HOH HOH . I 3 HOH C 20 320 55 HOH HOH . I 3 HOH C 21 321 57 HOH HOH . I 3 HOH C 22 322 58 HOH HOH . I 3 HOH C 23 323 60 HOH HOH . I 3 HOH C 24 324 61 HOH HOH . I 3 HOH C 25 325 62 HOH HOH . I 3 HOH C 26 326 63 HOH HOH . I 3 HOH C 27 327 65 HOH HOH . I 3 HOH C 28 328 66 HOH HOH . I 3 HOH C 29 329 73 HOH HOH . I 3 HOH C 30 330 75 HOH HOH . I 3 HOH C 31 331 78 HOH HOH . I 3 HOH C 32 332 81 HOH HOH . I 3 HOH C 33 333 83 HOH HOH . I 3 HOH C 34 334 84 HOH HOH . I 3 HOH C 35 335 88 HOH HOH . I 3 HOH C 36 336 89 HOH HOH . I 3 HOH C 37 337 92 HOH HOH . I 3 HOH C 38 338 101 HOH HOH . I 3 HOH C 39 339 118 HOH HOH . I 3 HOH C 40 340 121 HOH HOH . I 3 HOH C 41 341 123 HOH HOH . I 3 HOH C 42 342 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 9.074 54.534 56.206 1 17.84 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . D 2 10.695 59.107 56.039 1 22.18 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . D 2 7.712 59.994 52.321 1 21.49 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . D 2 5.372 55.993 53.389 1 21.4 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . D 2 9.852 55.661 56.375 1 18.57 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . D 2 10.951 55.775 57.242 1 18.13 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . D 2 11.393 57.031 57.25 1 20.61 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . D 2 10.575 57.77 56.36 1 20.93 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . D 2 12.603 57.535 58.007 1 21.45 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . D 2 11.542 54.63 58.038 1 18.13 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . D 2 10.735 54.402 59.279 1 16.22 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . D 2 11.438 53.48 60.186 1 19.42 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . D 2 11.004 53.374 61.338 1 18.64 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . D 2 12.439 52.809 59.845 1 15.51 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . D 2 10.014 59.736 54.984 1 19.69 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . D 2 10.295 61.003 54.543 1 19.61 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . D 2 9.506 61.308 53.456 1 20.69 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . D 2 8.709 60.108 53.271 1 21.1 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . D 2 11.377 61.835 55.187 1 18.54 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . D 2 9.507 62.471 52.512 1 21.35 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . D 2 10.637 62.93 51.927 1 24.04 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . D 2 6.805 58.971 52.275 1 17.96 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . D 2 5.648 58.931 51.436 1 20.63 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . D 2 4.953 57.81 51.744 1 21.56 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . D 2 5.705 57.174 52.823 1 20.85 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . D 2 5.296 59.913 50.351 1 22.87 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . D 2 3.694 57.252 51.126 1 24.01 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . D 2 3.145 57.592 49.975 1 21.66 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . D 2 6.247 55.264 54.193 1 20.02 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . D 2 5.936 53.897 54.543 1 19.44 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . D 2 6.956 53.497 55.321 1 18.69 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . D 2 7.88 54.612 55.438 1 19.11 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . D 2 4.753 52.991 54.171 1 15.5 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . D 2 7.082 52.117 55.91 1 20.58 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . D 2 7.786 51.239 54.844 1 21.73 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . D 2 7.662 49.741 55.066 1 23.86 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . D 2 7.243 49.231 56.093 1 23.08 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . D 2 8.022 48.929 54.161 1 27.33 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . D 2 9.572 56.916 55.891 1 21.41 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . D 2 9.079 59.233 54.256 1 21.65 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . D 2 6.768 57.935 53.145 1 19.03 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . D 2 7.397 55.692 54.811 1 17.87 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . D 2 8.228 57.391 54.54 1 21.26 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #