data_4QB2
#
_model_server_result.job_id            QsNuoX1HLggrTWFvD_xkzg 
_model_server_result.datetime_utc      '2025-03-30 21:31:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qb2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    4QB2 
#
_exptl.entry_id    4QB2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.139 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'beta-D-glucopyranuronic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QB2 
_cell.length_a            39.891 
_cell.length_b            47.552 
_cell.length_c            102.735 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QB2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 41 A GLU 18 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc2 A OE2 GLU 43 A GLU 20 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc3 A OE1 GLU 43 A GLU 20 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc4 A O THR 61 A THR 38 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc5 A O GLY 64 A GLY 41 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc6 A OD1 ASN 67 A ASN 44 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc7 A O PHE 68 A PHE 45 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc8 A OE2 GLU 152 A GLU 129 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc9 A OE1 GLU 152 A GLU 129 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc10 A OD1 ASP 157 A ASP 134 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc11 A O ASP 157 A ASP 134 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc12 B O4 GCU . A GCU 201 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc13 B O6A GCU . A GCU 201 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc14 D CA CA . A CA 203 1_555 F O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc15 D CA CA . A CA 203 1_555 F O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
#
_chem_comp.formula           'C6 H10 O7' 
_chem_comp.formula_weight    194.139 
_chem_comp.id                BDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'beta-D-glucopyranuronic acid' 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'beta-D-glucuronic acid;D-glucuronic acid;glucuronic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BDP sing 70 n n 
C1 O5 BDP sing 71 n n 
C1 O1 BDP sing 72 n n 
C1 H1 BDP sing 73 n n 
C2 C3 BDP sing 74 n n 
C2 O2 BDP sing 75 n n 
C2 H2 BDP sing 76 n n 
C3 C4 BDP sing 77 n n 
C3 O3 BDP sing 78 n n 
C3 H3 BDP sing 79 n n 
C4 C5 BDP sing 80 n n 
C4 O4 BDP sing 81 n n 
C4 H4 BDP sing 82 n n 
C5 C6 BDP sing 83 n n 
C5 O5 BDP sing 84 n n 
C5 H5 BDP sing 85 n n 
C6 O6A BDP doub 86 n n 
C6 O6B BDP sing 87 n n 
O2 HO2 BDP sing 88 n n 
O3 HO3 BDP sing 89 n n 
O4 HO4 BDP sing 90 n n 
O1 HO1 BDP sing 91 n n 
O6B HO6B BDP sing 92 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BDP DGlcpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BDP 'b-D-glucopyranuronic acid' 'COMMON NAME' GMML 1 
BDP b-D-GlcpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BDP GlcA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4QB2 
_atom_sites.fract_transf_matrix[1][1]    0.025068 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GCU A 1 201 1 GCU GCU . 
C 3 CA A 1 202 1 CA CA . 
D 3 CA A 1 203 2 CA CA . 
E 4 BDP A 1 204 2 BDP GCU . 
F 5 HOH A 1 301 1 HOH HOH . 
F 5 HOH A 2 302 2 HOH HOH . 
F 5 HOH A 3 303 3 HOH HOH . 
F 5 HOH A 4 304 4 HOH HOH . 
F 5 HOH A 5 305 5 HOH HOH . 
F 5 HOH A 6 306 6 HOH HOH . 
F 5 HOH A 7 307 7 HOH HOH . 
F 5 HOH A 8 308 8 HOH HOH . 
F 5 HOH A 9 309 9 HOH HOH . 
F 5 HOH A 10 310 10 HOH HOH . 
F 5 HOH A 11 311 11 HOH HOH . 
F 5 HOH A 12 312 12 HOH HOH . 
F 5 HOH A 13 313 13 HOH HOH . 
F 5 HOH A 14 314 14 HOH HOH . 
F 5 HOH A 15 315 15 HOH HOH . 
F 5 HOH A 16 316 16 HOH HOH . 
F 5 HOH A 17 317 17 HOH HOH . 
F 5 HOH A 18 318 18 HOH HOH . 
F 5 HOH A 19 319 19 HOH HOH . 
F 5 HOH A 20 320 20 HOH HOH . 
F 5 HOH A 21 321 21 HOH HOH . 
F 5 HOH A 22 322 22 HOH HOH . 
F 5 HOH A 23 323 23 HOH HOH . 
F 5 HOH A 24 324 24 HOH HOH . 
F 5 HOH A 25 325 25 HOH HOH . 
F 5 HOH A 26 326 26 HOH HOH . 
F 5 HOH A 27 327 27 HOH HOH . 
F 5 HOH A 28 328 28 HOH HOH . 
F 5 HOH A 29 329 29 HOH HOH . 
F 5 HOH A 30 330 30 HOH HOH . 
F 5 HOH A 31 331 31 HOH HOH . 
F 5 HOH A 32 332 32 HOH HOH . 
F 5 HOH A 33 333 33 HOH HOH . 
F 5 HOH A 34 334 34 HOH HOH . 
F 5 HOH A 35 335 35 HOH HOH . 
F 5 HOH A 36 336 36 HOH HOH . 
F 5 HOH A 37 337 37 HOH HOH . 
F 5 HOH A 38 338 38 HOH HOH . 
F 5 HOH A 39 339 39 HOH HOH . 
F 5 HOH A 40 340 41 HOH HOH . 
F 5 HOH A 41 341 42 HOH HOH . 
F 5 HOH A 42 342 43 HOH HOH . 
F 5 HOH A 43 343 44 HOH HOH . 
F 5 HOH A 44 344 45 HOH HOH . 
F 5 HOH A 45 345 46 HOH HOH . 
F 5 HOH A 46 346 47 HOH HOH . 
F 5 HOH A 47 347 48 HOH HOH . 
F 5 HOH A 48 348 49 HOH HOH . 
F 5 HOH A 49 349 50 HOH HOH . 
F 5 HOH A 50 350 51 HOH HOH . 
F 5 HOH A 51 351 52 HOH HOH . 
F 5 HOH A 52 352 53 HOH HOH . 
F 5 HOH A 53 353 54 HOH HOH . 
F 5 HOH A 54 354 55 HOH HOH . 
F 5 HOH A 55 355 56 HOH HOH . 
F 5 HOH A 56 356 57 HOH HOH . 
F 5 HOH A 57 357 58 HOH HOH . 
F 5 HOH A 58 358 59 HOH HOH . 
F 5 HOH A 59 359 60 HOH HOH . 
F 5 HOH A 60 360 61 HOH HOH . 
F 5 HOH A 61 361 62 HOH HOH . 
F 5 HOH A 62 362 63 HOH HOH . 
F 5 HOH A 63 363 64 HOH HOH . 
F 5 HOH A 64 364 65 HOH HOH . 
F 5 HOH A 65 365 66 HOH HOH . 
F 5 HOH A 66 366 67 HOH HOH . 
F 5 HOH A 67 367 68 HOH HOH . 
F 5 HOH A 68 368 69 HOH HOH . 
F 5 HOH A 69 369 70 HOH HOH . 
F 5 HOH A 70 370 71 HOH HOH . 
F 5 HOH A 71 371 72 HOH HOH . 
F 5 HOH A 72 372 73 HOH HOH . 
F 5 HOH A 73 373 74 HOH HOH . 
F 5 HOH A 74 374 75 HOH HOH . 
F 5 HOH A 75 375 76 HOH HOH . 
F 5 HOH A 76 376 77 HOH HOH . 
F 5 HOH A 77 377 78 HOH HOH . 
F 5 HOH A 78 378 79 HOH HOH . 
F 5 HOH A 79 379 81 HOH HOH . 
F 5 HOH A 80 380 82 HOH HOH . 
F 5 HOH A 81 381 83 HOH HOH . 
F 5 HOH A 82 382 84 HOH HOH . 
F 5 HOH A 83 383 85 HOH HOH . 
F 5 HOH A 84 384 86 HOH HOH . 
F 5 HOH A 85 385 87 HOH HOH . 
F 5 HOH A 86 386 88 HOH HOH . 
F 5 HOH A 87 387 89 HOH HOH . 
F 5 HOH A 88 388 90 HOH HOH . 
F 5 HOH A 89 389 91 HOH HOH . 
F 5 HOH A 90 390 92 HOH HOH . 
F 5 HOH A 91 391 93 HOH HOH . 
F 5 HOH A 92 392 94 HOH HOH . 
F 5 HOH A 93 393 95 HOH HOH . 
F 5 HOH A 94 394 96 HOH HOH . 
F 5 HOH A 95 395 97 HOH HOH . 
F 5 HOH A 96 396 98 HOH HOH . 
F 5 HOH A 97 397 99 HOH HOH . 
F 5 HOH A 98 398 100 HOH HOH . 
F 5 HOH A 99 399 101 HOH HOH . 
F 5 HOH A 100 400 102 HOH HOH . 
F 5 HOH A 101 401 103 HOH HOH . 
F 5 HOH A 102 402 104 HOH HOH . 
F 5 HOH A 103 403 105 HOH HOH . 
F 5 HOH A 104 404 106 HOH HOH . 
F 5 HOH A 105 405 107 HOH HOH . 
F 5 HOH A 106 406 108 HOH HOH . 
F 5 HOH A 107 407 109 HOH HOH . 
F 5 HOH A 108 408 110 HOH HOH . 
F 5 HOH A 109 409 111 HOH HOH . 
F 5 HOH A 110 410 112 HOH HOH . 
F 5 HOH A 111 411 114 HOH HOH . 
F 5 HOH A 112 412 116 HOH HOH . 
F 5 HOH A 113 413 117 HOH HOH . 
F 5 HOH A 114 414 118 HOH HOH . 
F 5 HOH A 115 415 119 HOH HOH . 
F 5 HOH A 116 416 120 HOH HOH . 
F 5 HOH A 117 417 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BDP . . . E 4 -11.602 20.974 2.153 1 18.37 ? C1 BDP 204 A 1 
HETATM 2 C C2 BDP . . . E 4 -11.546 20.188 3.439 1 16.18 ? C2 BDP 204 A 1 
HETATM 3 C C3 BDP . . . E 4 -10.078 19.996 3.79 1 15.19 ? C3 BDP 204 A 1 
HETATM 4 C C4 BDP . . . E 4 -9.417 19.297 2.637 1 15.58 ? C4 BDP 204 A 1 
HETATM 5 C C5 BDP . . . E 4 -9.578 20.162 1.385 1 15.65 ? C5 BDP 204 A 1 
HETATM 6 C C6 BDP . . . E 4 -8.909 19.549 0.219 1 18.45 ? C6 BDP 204 A 1 
HETATM 7 O O2 BDP . . . E 4 -12.132 20.974 4.481 1 17.92 ? O2 BDP 204 A 1 
HETATM 8 O O3 BDP . . . E 4 -10.023 19.194 5.001 1 14.68 ? O3 BDP 204 A 1 
HETATM 9 O O4 BDP . . . E 4 -7.987 19.232 2.927 1 16.71 ? O4 BDP 204 A 1 
HETATM 10 O O5 BDP . . . E 4 -10.999 20.162 1.126 1 16.08 ? O5 BDP 204 A 1 
HETATM 11 O O6A BDP . . . E 4 -9.515 19.412 -0.871 1 17.99 ? O6A BDP 204 A 1 
HETATM 12 O O1 BDP . . . E 4 -12.912 21.208 1.789 1 26.18 ? O1 BDP 204 A 1 
HETATM 13 O O6B BDP . . . E 4 -7.732 19.166 0.304 1 17.3 ? O6B BDP 204 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#