data_4QBJ # _model_server_result.job_id ei8UVm-_s2pHc3ak_olFBw _model_server_result.datetime_utc '2024-11-25 14:53:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4QBJ # _exptl.entry_id 4QBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.457 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QBJ _cell.length_a 54.792 _cell.length_b 77.074 _cell.length_c 113.237 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H23 F3 N2 O3' _chem_comp.formula_weight 456.457 _chem_comp.id 2XQ _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAE 2XQ doub 1 n y CAH CAX 2XQ sing 2 n y CAE CAG 2XQ sing 3 n y CAG NAS 2XQ doub 4 n y NAS CAM 2XQ sing 5 n y CAM CAX 2XQ doub 6 n y CAX CAQ 2XQ sing 7 n n CAQ NAT 2XQ sing 8 n n NAT CAO 2XQ sing 9 n n CAO CAN 2XQ sing 10 n n CAN CAP 2XQ sing 11 n n CAP OAU 2XQ sing 12 n n OAU CBD 2XQ sing 13 n n CBD CAI 2XQ sing 14 n y CBD CBG 2XQ doub 15 n y CAI CAF 2XQ doub 16 n y CAF CAL 2XQ sing 17 n y CAL CBF 2XQ doub 18 n y CBF OAW 2XQ sing 19 n y CBF CBG 2XQ sing 20 n y OAW CBE 2XQ sing 21 n y CBG CAZ 2XQ sing 22 n y CAZ CAA 2XQ sing 23 n n CAZ CBE 2XQ doub 24 n y CBE CAR 2XQ sing 25 n n CAR OAV 2XQ sing 26 n n OAV CBC 2XQ sing 27 n n CBC CAK 2XQ sing 28 n y CBC CBB 2XQ doub 29 n y CAK CAJ 2XQ doub 30 n y CAJ CAY 2XQ sing 31 n y CAY FAB 2XQ sing 32 n n CAY CBA 2XQ doub 33 n y CBA FAC 2XQ sing 34 n n CBA CBB 2XQ sing 35 n y CBB FAD 2XQ sing 36 n n CAH HAH 2XQ sing 37 n n CAE HAE 2XQ sing 38 n n CAG HAG 2XQ sing 39 n n CAM HAM 2XQ sing 40 n n CAQ HAQ1 2XQ sing 41 n n CAQ HAQ2 2XQ sing 42 n n NAT HAT 2XQ sing 43 n n CAO HAO1 2XQ sing 44 n n CAO HAO2 2XQ sing 45 n n CAN HAN1 2XQ sing 46 n n CAN HAN2 2XQ sing 47 n n CAP HAP1 2XQ sing 48 n n CAP HAP2 2XQ sing 49 n n CAI HAI 2XQ sing 50 n n CAF HAF 2XQ sing 51 n n CAL HAL 2XQ sing 52 n n CAA HAA1 2XQ sing 53 n n CAA HAA2 2XQ sing 54 n n CAA HAA3 2XQ sing 55 n n CAR HAR1 2XQ sing 56 n n CAR HAR2 2XQ sing 57 n n CAK HAK 2XQ sing 58 n n CAJ HAJ 2XQ sing 59 n n # _atom_sites.entry_id 4QBJ _atom_sites.fract_transf_matrix[1][1] 0.018251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 500 SO4 SO4 . C 2 SO4 A 1 502 501 SO4 SO4 . D 2 SO4 A 1 503 502 SO4 SO4 . E 3 NHM A 1 504 700 NHM NHM . F 4 2XQ A 1 505 701 2XQ D21 . G 5 HOH A 1 601 1 HOH HOH . G 5 HOH A 2 602 2 HOH HOH . G 5 HOH A 3 603 3 HOH HOH . G 5 HOH A 4 604 4 HOH HOH . G 5 HOH A 5 605 5 HOH HOH . G 5 HOH A 6 606 6 HOH HOH . G 5 HOH A 7 607 7 HOH HOH . G 5 HOH A 8 608 8 HOH HOH . G 5 HOH A 9 609 9 HOH HOH . G 5 HOH A 10 610 10 HOH HOH . G 5 HOH A 11 611 11 HOH HOH . G 5 HOH A 12 612 12 HOH HOH . G 5 HOH A 13 613 13 HOH HOH . G 5 HOH A 14 614 14 HOH HOH . G 5 HOH A 15 615 15 HOH HOH . G 5 HOH A 16 616 16 HOH HOH . G 5 HOH A 17 617 17 HOH HOH . G 5 HOH A 18 618 18 HOH HOH . G 5 HOH A 19 619 19 HOH HOH . G 5 HOH A 20 620 20 HOH HOH . G 5 HOH A 21 621 21 HOH HOH . G 5 HOH A 22 622 22 HOH HOH . G 5 HOH A 23 623 23 HOH HOH . G 5 HOH A 24 624 24 HOH HOH . G 5 HOH A 25 625 25 HOH HOH . G 5 HOH A 26 626 26 HOH HOH . G 5 HOH A 27 627 27 HOH HOH . G 5 HOH A 28 628 28 HOH HOH . G 5 HOH A 29 629 29 HOH HOH . G 5 HOH A 30 630 30 HOH HOH . G 5 HOH A 31 631 31 HOH HOH . G 5 HOH A 32 632 32 HOH HOH . G 5 HOH A 33 633 33 HOH HOH . G 5 HOH A 34 634 34 HOH HOH . G 5 HOH A 35 635 35 HOH HOH . G 5 HOH A 36 636 36 HOH HOH . G 5 HOH A 37 637 37 HOH HOH . G 5 HOH A 38 638 38 HOH HOH . G 5 HOH A 39 639 39 HOH HOH . G 5 HOH A 40 640 40 HOH HOH . G 5 HOH A 41 641 41 HOH HOH . G 5 HOH A 42 642 42 HOH HOH . G 5 HOH A 43 643 43 HOH HOH . G 5 HOH A 44 644 44 HOH HOH . G 5 HOH A 45 645 45 HOH HOH . G 5 HOH A 46 646 46 HOH HOH . G 5 HOH A 47 647 47 HOH HOH . G 5 HOH A 48 648 48 HOH HOH . G 5 HOH A 49 649 49 HOH HOH . G 5 HOH A 50 650 50 HOH HOH . G 5 HOH A 51 651 51 HOH HOH . G 5 HOH A 52 652 52 HOH HOH . G 5 HOH A 53 653 53 HOH HOH . G 5 HOH A 54 654 54 HOH HOH . G 5 HOH A 55 655 55 HOH HOH . G 5 HOH A 56 656 56 HOH HOH . G 5 HOH A 57 657 57 HOH HOH . G 5 HOH A 58 658 58 HOH HOH . G 5 HOH A 59 659 59 HOH HOH . G 5 HOH A 60 660 60 HOH HOH . G 5 HOH A 61 661 61 HOH HOH . G 5 HOH A 62 662 62 HOH HOH . G 5 HOH A 63 663 63 HOH HOH . G 5 HOH A 64 664 64 HOH HOH . G 5 HOH A 65 665 65 HOH HOH . G 5 HOH A 66 666 66 HOH HOH . G 5 HOH A 67 667 67 HOH HOH . G 5 HOH A 68 668 68 HOH HOH . G 5 HOH A 69 669 69 HOH HOH . G 5 HOH A 70 670 70 HOH HOH . G 5 HOH A 71 671 71 HOH HOH . G 5 HOH A 72 672 72 HOH HOH . G 5 HOH A 73 673 73 HOH HOH . G 5 HOH A 74 674 74 HOH HOH . G 5 HOH A 75 675 75 HOH HOH . G 5 HOH A 76 676 76 HOH HOH . G 5 HOH A 77 677 77 HOH HOH . G 5 HOH A 78 678 78 HOH HOH . G 5 HOH A 79 679 79 HOH HOH . G 5 HOH A 80 680 80 HOH HOH . G 5 HOH A 81 681 81 HOH HOH . G 5 HOH A 82 682 82 HOH HOH . G 5 HOH A 83 683 83 HOH HOH . G 5 HOH A 84 684 84 HOH HOH . G 5 HOH A 85 685 85 HOH HOH . G 5 HOH A 86 686 86 HOH HOH . G 5 HOH A 87 687 87 HOH HOH . G 5 HOH A 88 688 88 HOH HOH . G 5 HOH A 89 689 89 HOH HOH . G 5 HOH A 90 690 90 HOH HOH . G 5 HOH A 91 691 91 HOH HOH . G 5 HOH A 92 692 92 HOH HOH . G 5 HOH A 93 693 93 HOH HOH . G 5 HOH A 94 694 94 HOH HOH . G 5 HOH A 95 695 95 HOH HOH . G 5 HOH A 96 696 96 HOH HOH . G 5 HOH A 97 697 97 HOH HOH . G 5 HOH A 98 698 98 HOH HOH . G 5 HOH A 99 699 99 HOH HOH . G 5 HOH A 100 700 100 HOH HOH . G 5 HOH A 101 701 101 HOH HOH . G 5 HOH A 102 702 102 HOH HOH . G 5 HOH A 103 703 103 HOH HOH . G 5 HOH A 104 704 104 HOH HOH . G 5 HOH A 105 705 106 HOH HOH . G 5 HOH A 106 706 107 HOH HOH . G 5 HOH A 107 707 108 HOH HOH . G 5 HOH A 108 708 109 HOH HOH . G 5 HOH A 109 709 110 HOH HOH . G 5 HOH A 110 710 112 HOH HOH . G 5 HOH A 111 711 113 HOH HOH . G 5 HOH A 112 712 115 HOH HOH . G 5 HOH A 113 713 116 HOH HOH . G 5 HOH A 114 714 117 HOH HOH . G 5 HOH A 115 715 118 HOH HOH . G 5 HOH A 116 716 119 HOH HOH . G 5 HOH A 117 717 120 HOH HOH . G 5 HOH A 118 718 121 HOH HOH . G 5 HOH A 119 719 122 HOH HOH . G 5 HOH A 120 720 124 HOH HOH . G 5 HOH A 121 721 125 HOH HOH . G 5 HOH A 122 722 126 HOH HOH . G 5 HOH A 123 723 127 HOH HOH . G 5 HOH A 124 724 128 HOH HOH . G 5 HOH A 125 725 129 HOH HOH . G 5 HOH A 126 726 130 HOH HOH . G 5 HOH A 127 727 131 HOH HOH . G 5 HOH A 128 728 132 HOH HOH . G 5 HOH A 129 729 133 HOH HOH . G 5 HOH A 130 730 134 HOH HOH . G 5 HOH A 131 731 138 HOH HOH . G 5 HOH A 132 732 139 HOH HOH . G 5 HOH A 133 733 140 HOH HOH . G 5 HOH A 134 734 141 HOH HOH . G 5 HOH A 135 735 142 HOH HOH . G 5 HOH A 136 736 143 HOH HOH . G 5 HOH A 137 737 144 HOH HOH . G 5 HOH A 138 738 145 HOH HOH . G 5 HOH A 139 739 147 HOH HOH . G 5 HOH A 140 740 149 HOH HOH . G 5 HOH A 141 741 151 HOH HOH . G 5 HOH A 142 742 153 HOH HOH . G 5 HOH A 143 743 154 HOH HOH . G 5 HOH A 144 744 155 HOH HOH . G 5 HOH A 145 745 156 HOH HOH . G 5 HOH A 146 746 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 2XQ . . . F 4 15.954 1.296 21.833 1 33.75 ? CAH 2XQ 505 A 1 HETATM 2 C CAE 2XQ . . . F 4 16.001 1.052 20.477 1 39.1 ? CAE 2XQ 505 A 1 HETATM 3 C CAG 2XQ . . . F 4 16.139 -0.318 20.066 1 45.68 ? CAG 2XQ 505 A 1 HETATM 4 N NAS 2XQ . . . F 4 16.229 -1.393 20.876 1 39 ? NAS 2XQ 505 A 1 HETATM 5 C CAM 2XQ . . . F 4 16.225 -1.163 22.189 1 37.12 ? CAM 2XQ 505 A 1 HETATM 6 C CAX 2XQ . . . F 4 16.116 0.201 22.696 1 34.8 ? CAX 2XQ 505 A 1 HETATM 7 C CAQ 2XQ . . . F 4 16.111 0.419 24.2 1 29.08 ? CAQ 2XQ 505 A 1 HETATM 8 N NAT 2XQ . . . F 4 16.921 1.549 24.681 1 34.09 ? NAT 2XQ 505 A 1 HETATM 9 C CAO 2XQ . . . F 4 16.84 1.65 26.179 1 33.91 ? CAO 2XQ 505 A 1 HETATM 10 C CAN 2XQ . . . F 4 17.711 2.801 26.694 1 30.38 ? CAN 2XQ 505 A 1 HETATM 11 C CAP 2XQ . . . F 4 17.44 2.894 28.206 1 27.06 ? CAP 2XQ 505 A 1 HETATM 12 O OAU 2XQ . . . F 4 17.947 1.638 28.746 1 28.23 ? OAU 2XQ 505 A 1 HETATM 13 C CBD 2XQ . . . F 4 17.893 1.434 30.081 1 31.81 ? CBD 2XQ 505 A 1 HETATM 14 C CAI 2XQ . . . F 4 17.515 2.483 30.934 1 26.99 ? CAI 2XQ 505 A 1 HETATM 15 C CAF 2XQ . . . F 4 17.498 2.259 32.291 1 31.37 ? CAF 2XQ 505 A 1 HETATM 16 C CAL 2XQ . . . F 4 17.826 1.061 32.824 1 28.62 ? CAL 2XQ 505 A 1 HETATM 17 C CBF 2XQ . . . F 4 18.205 0.036 31.987 1 34.95 ? CBF 2XQ 505 A 1 HETATM 18 O OAW 2XQ . . . F 4 18.594 -1.232 32.329 1 37.99 ? OAW 2XQ 505 A 1 HETATM 19 C CBG 2XQ . . . F 4 18.243 0.197 30.595 1 30.52 ? CBG 2XQ 505 A 1 HETATM 20 C CAZ 2XQ . . . F 4 18.709 -1.085 29.988 1 39.05 ? CAZ 2XQ 505 A 1 HETATM 21 C CAA 2XQ . . . F 4 18.905 -1.333 28.487 1 38.96 ? CAA 2XQ 505 A 1 HETATM 22 C CBE 2XQ . . . F 4 18.91 -1.841 31.11 1 37.96 ? CBE 2XQ 505 A 1 HETATM 23 C CAR 2XQ . . . F 4 19.419 -3.261 31.277 1 45.74 ? CAR 2XQ 505 A 1 HETATM 24 O OAV 2XQ . . . F 4 18.38 -4.172 30.997 1 54.72 ? OAV 2XQ 505 A 1 HETATM 25 C CBC 2XQ . . . F 4 17.495 -4.868 31.755 1 57.12 ? CBC 2XQ 505 A 1 HETATM 26 C CAK 2XQ . . . F 4 17.78 -4.997 33.085 1 69.08 ? CAK 2XQ 505 A 1 HETATM 27 C CAJ 2XQ . . . F 4 16.913 -5.734 33.866 1 70.13 ? CAJ 2XQ 505 A 1 HETATM 28 C CAY 2XQ . . . F 4 15.812 -6.354 33.304 1 61.21 ? CAY 2XQ 505 A 1 HETATM 29 F FAB 2XQ . . . F 4 15.007 -7.084 34.13 1 57.02 ? FAB 2XQ 505 A 1 HETATM 30 C CBA 2XQ . . . F 4 15.55 -6.221 31.951 1 64.62 ? CBA 2XQ 505 A 1 HETATM 31 F FAC 2XQ . . . F 4 14.479 -6.78 31.294 1 70.42 ? FAC 2XQ 505 A 1 HETATM 32 C CBB 2XQ . . . F 4 16.403 -5.487 31.191 1 60.81 ? CBB 2XQ 505 A 1 HETATM 33 F FAD 2XQ . . . F 4 16.147 -5.376 29.855 1 77.15 ? FAD 2XQ 505 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 33 #