data_4QBK # _model_server_result.job_id F9wRXBvE2dsixrpmpBTGxg _model_server_result.datetime_utc '2024-10-20 00:31:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qbk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4QBK # _exptl.entry_id 4QBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.456 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-deoxy-3'-[(O-methyl-L-tyrosyl)amino]adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QBK _cell.length_a 64.751 _cell.length_b 64.751 _cell.length_c 157.679 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H25 N7 O5' _chem_comp.formula_weight 443.456 _chem_comp.id 3NZ _chem_comp.mon_nstd_flag . _chem_comp.name "3'-deoxy-3'-[(O-methyl-L-tyrosyl)amino]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 3NZ sing 1 n n N7 C5 3NZ sing 2 n y N7 C8 3NZ doub 3 n y C6 C5 3NZ doub 4 n y C6 N1 3NZ sing 5 n y C5 C4 3NZ sing 6 n y C8 N9 3NZ sing 7 n y N1 C2 3NZ doub 8 n y C4 N9 3NZ sing 9 n y C4 N3 3NZ doub 10 n y N9 C1' 3NZ sing 11 n n C2 N3 3NZ sing 12 n y O4' C1' 3NZ sing 13 n n O4' C4' 3NZ sing 14 n n C1' C2' 3NZ sing 15 n n C4' C5' 3NZ sing 16 n n C4' C3' 3NZ sing 17 n n C5' O5' 3NZ sing 18 n n C2' O2' 3NZ sing 19 n n C2' C3' 3NZ sing 20 n n C3' N3' 3NZ sing 21 n n O C 3NZ doub 22 n n CMZ OM 3NZ sing 23 n n N3' C 3NZ sing 24 n n C CA 3NZ sing 25 n n OM CZ 3NZ sing 26 n n CZ CE1 3NZ doub 27 n y CZ CE2 3NZ sing 28 n y CE1 CD1 3NZ sing 29 n y CE2 CD2 3NZ doub 30 n y CD1 CG 3NZ doub 31 n y CD2 CG 3NZ sing 32 n y CG CB 3NZ sing 33 n n CA CB 3NZ sing 34 n n CA N 3NZ sing 35 n n CA H1 3NZ sing 36 n n CB H2 3NZ sing 37 n n CB H3 3NZ sing 38 n n CD2 H4 3NZ sing 39 n n CE2 H5 3NZ sing 40 n n CMZ H6 3NZ sing 41 n n CMZ H7 3NZ sing 42 n n CMZ H8 3NZ sing 43 n n CE1 H9 3NZ sing 44 n n CD1 H10 3NZ sing 45 n n N H11 3NZ sing 46 n n N H12 3NZ sing 47 n n N3' H14 3NZ sing 48 n n C3' H15 3NZ sing 49 n n C4' H16 3NZ sing 50 n n C5' H17 3NZ sing 51 n n C5' H18 3NZ sing 52 n n O5' H19 3NZ sing 53 n n C2' H20 3NZ sing 54 n n O2' H21 3NZ sing 55 n n C1' H22 3NZ sing 56 n n C8 H23 3NZ sing 57 n n N6 H24 3NZ sing 58 n n N6 H25 3NZ sing 59 n n C2 H26 3NZ sing 60 n n # _atom_sites.entry_id 4QBK _atom_sites.fract_transf_matrix[1][1] 0.015444 _atom_sites.fract_transf_matrix[1][2] 0.008916 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 3 3NZ A 1 202 1 3NZ XXX . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 10 HOH HOH . D 4 HOH A 10 310 11 HOH HOH . D 4 HOH A 11 311 12 HOH HOH . D 4 HOH A 12 312 13 HOH HOH . D 4 HOH A 13 313 14 HOH HOH . D 4 HOH A 14 314 15 HOH HOH . D 4 HOH A 15 315 16 HOH HOH . D 4 HOH A 16 316 17 HOH HOH . D 4 HOH A 17 317 18 HOH HOH . D 4 HOH A 18 318 19 HOH HOH . D 4 HOH A 19 319 20 HOH HOH . D 4 HOH A 20 320 21 HOH HOH . D 4 HOH A 21 321 22 HOH HOH . D 4 HOH A 22 322 23 HOH HOH . D 4 HOH A 23 323 24 HOH HOH . D 4 HOH A 24 324 25 HOH HOH . D 4 HOH A 25 325 26 HOH HOH . D 4 HOH A 26 326 27 HOH HOH . D 4 HOH A 27 327 28 HOH HOH . D 4 HOH A 28 328 29 HOH HOH . D 4 HOH A 29 329 30 HOH HOH . D 4 HOH A 30 330 31 HOH HOH . D 4 HOH A 31 331 32 HOH HOH . D 4 HOH A 32 332 33 HOH HOH . D 4 HOH A 33 333 34 HOH HOH . D 4 HOH A 34 334 35 HOH HOH . D 4 HOH A 35 335 36 HOH HOH . D 4 HOH A 36 336 37 HOH HOH . D 4 HOH A 37 337 38 HOH HOH . D 4 HOH A 38 338 39 HOH HOH . D 4 HOH A 39 339 40 HOH HOH . D 4 HOH A 40 340 41 HOH HOH . D 4 HOH A 41 341 42 HOH HOH . D 4 HOH A 42 342 43 HOH HOH . D 4 HOH A 43 343 44 HOH HOH . D 4 HOH A 44 344 45 HOH HOH . D 4 HOH A 45 345 46 HOH HOH . D 4 HOH A 46 346 47 HOH HOH . D 4 HOH A 47 347 48 HOH HOH . D 4 HOH A 48 348 49 HOH HOH . D 4 HOH A 49 349 50 HOH HOH . D 4 HOH A 50 350 51 HOH HOH . D 4 HOH A 51 351 52 HOH HOH . D 4 HOH A 52 352 53 HOH HOH . D 4 HOH A 53 353 54 HOH HOH . D 4 HOH A 54 354 55 HOH HOH . D 4 HOH A 55 355 56 HOH HOH . D 4 HOH A 56 356 57 HOH HOH . D 4 HOH A 57 357 58 HOH HOH . D 4 HOH A 58 358 59 HOH HOH . D 4 HOH A 59 359 60 HOH HOH . D 4 HOH A 60 360 61 HOH HOH . D 4 HOH A 61 361 62 HOH HOH . D 4 HOH A 62 362 64 HOH HOH . D 4 HOH A 63 363 65 HOH HOH . D 4 HOH A 64 364 66 HOH HOH . D 4 HOH A 65 365 67 HOH HOH . D 4 HOH A 66 366 68 HOH HOH . D 4 HOH A 67 367 69 HOH HOH . D 4 HOH A 68 368 70 HOH HOH . D 4 HOH A 69 369 71 HOH HOH . D 4 HOH A 70 370 72 HOH HOH . D 4 HOH A 71 371 73 HOH HOH . D 4 HOH A 72 372 74 HOH HOH . D 4 HOH A 73 373 75 HOH HOH . D 4 HOH A 74 374 76 HOH HOH . D 4 HOH A 75 375 77 HOH HOH . D 4 HOH A 76 376 78 HOH HOH . D 4 HOH A 77 377 80 HOH HOH . D 4 HOH A 78 378 81 HOH HOH . D 4 HOH A 79 379 82 HOH HOH . D 4 HOH A 80 380 83 HOH HOH . D 4 HOH A 81 381 84 HOH HOH . D 4 HOH A 82 382 86 HOH HOH . D 4 HOH A 83 383 87 HOH HOH . D 4 HOH A 84 384 88 HOH HOH . D 4 HOH A 85 385 89 HOH HOH . D 4 HOH A 86 386 90 HOH HOH . D 4 HOH A 87 387 91 HOH HOH . D 4 HOH A 88 388 93 HOH HOH . D 4 HOH A 89 389 94 HOH HOH . D 4 HOH A 90 390 95 HOH HOH . D 4 HOH A 91 391 96 HOH HOH . D 4 HOH A 92 392 97 HOH HOH . D 4 HOH A 93 393 99 HOH HOH . D 4 HOH A 94 394 100 HOH HOH . D 4 HOH A 95 395 101 HOH HOH . D 4 HOH A 96 396 102 HOH HOH . D 4 HOH A 97 397 103 HOH HOH . D 4 HOH A 98 398 104 HOH HOH . D 4 HOH A 99 399 106 HOH HOH . D 4 HOH A 100 400 107 HOH HOH . D 4 HOH A 101 401 108 HOH HOH . D 4 HOH A 102 402 109 HOH HOH . D 4 HOH A 103 403 110 HOH HOH . D 4 HOH A 104 404 111 HOH HOH . D 4 HOH A 105 405 112 HOH HOH . D 4 HOH A 106 406 113 HOH HOH . D 4 HOH A 107 407 114 HOH HOH . D 4 HOH A 108 408 115 HOH HOH . D 4 HOH A 109 409 116 HOH HOH . D 4 HOH A 110 410 117 HOH HOH . D 4 HOH A 111 411 118 HOH HOH . D 4 HOH A 112 412 119 HOH HOH . D 4 HOH A 113 413 120 HOH HOH . D 4 HOH A 114 414 121 HOH HOH . D 4 HOH A 115 415 122 HOH HOH . D 4 HOH A 116 416 124 HOH HOH . D 4 HOH A 117 417 125 HOH HOH . D 4 HOH A 118 418 126 HOH HOH . D 4 HOH A 119 419 128 HOH HOH . D 4 HOH A 120 420 129 HOH HOH . D 4 HOH A 121 421 131 HOH HOH . D 4 HOH A 122 422 132 HOH HOH . D 4 HOH A 123 423 133 HOH HOH . D 4 HOH A 124 424 134 HOH HOH . D 4 HOH A 125 425 135 HOH HOH . D 4 HOH A 126 426 136 HOH HOH . D 4 HOH A 127 427 137 HOH HOH . D 4 HOH A 128 428 138 HOH HOH . D 4 HOH A 129 429 139 HOH HOH . D 4 HOH A 130 430 141 HOH HOH . D 4 HOH A 131 431 142 HOH HOH . D 4 HOH A 132 432 143 HOH HOH . D 4 HOH A 133 433 144 HOH HOH . D 4 HOH A 134 434 146 HOH HOH . D 4 HOH A 135 435 147 HOH HOH . D 4 HOH A 136 436 148 HOH HOH . D 4 HOH A 137 437 150 HOH HOH . D 4 HOH A 138 438 151 HOH HOH . D 4 HOH A 139 439 153 HOH HOH . D 4 HOH A 140 440 154 HOH HOH . D 4 HOH A 141 441 155 HOH HOH . D 4 HOH A 142 442 156 HOH HOH . D 4 HOH A 143 443 157 HOH HOH . D 4 HOH A 144 444 158 HOH HOH . D 4 HOH A 145 445 159 HOH HOH . D 4 HOH A 146 446 161 HOH HOH . D 4 HOH A 147 447 162 HOH HOH . D 4 HOH A 148 448 163 HOH HOH . D 4 HOH A 149 449 164 HOH HOH . D 4 HOH A 150 450 166 HOH HOH . D 4 HOH A 151 451 167 HOH HOH . D 4 HOH A 152 452 168 HOH HOH . D 4 HOH A 153 453 169 HOH HOH . D 4 HOH A 154 454 170 HOH HOH . D 4 HOH A 155 455 171 HOH HOH . D 4 HOH A 156 456 172 HOH HOH . D 4 HOH A 157 457 174 HOH HOH . D 4 HOH A 158 458 175 HOH HOH . D 4 HOH A 159 459 176 HOH HOH . D 4 HOH A 160 460 178 HOH HOH . D 4 HOH A 161 461 179 HOH HOH . D 4 HOH A 162 462 180 HOH HOH . D 4 HOH A 163 463 181 HOH HOH . D 4 HOH A 164 464 182 HOH HOH . D 4 HOH A 165 465 183 HOH HOH . D 4 HOH A 166 466 184 HOH HOH . D 4 HOH A 167 467 185 HOH HOH . D 4 HOH A 168 468 186 HOH HOH . D 4 HOH A 169 469 187 HOH HOH . D 4 HOH A 170 470 189 HOH HOH . D 4 HOH A 171 471 191 HOH HOH . D 4 HOH A 172 472 192 HOH HOH . D 4 HOH A 173 473 193 HOH HOH . D 4 HOH A 174 474 194 HOH HOH . D 4 HOH A 175 475 195 HOH HOH . D 4 HOH A 176 476 196 HOH HOH . D 4 HOH A 177 477 197 HOH HOH . D 4 HOH A 178 478 198 HOH HOH . D 4 HOH A 179 479 199 HOH HOH . D 4 HOH A 180 480 200 HOH HOH . D 4 HOH A 181 481 201 HOH HOH . D 4 HOH A 182 482 202 HOH HOH . D 4 HOH A 183 483 203 HOH HOH . D 4 HOH A 184 484 204 HOH HOH . D 4 HOH A 185 485 205 HOH HOH . D 4 HOH A 186 486 206 HOH HOH . D 4 HOH A 187 487 207 HOH HOH . D 4 HOH A 188 488 208 HOH HOH . D 4 HOH A 189 489 209 HOH HOH . D 4 HOH A 190 490 210 HOH HOH . D 4 HOH A 191 491 211 HOH HOH . D 4 HOH A 192 492 213 HOH HOH . D 4 HOH A 193 493 214 HOH HOH . D 4 HOH A 194 494 215 HOH HOH . D 4 HOH A 195 495 216 HOH HOH . D 4 HOH A 196 496 2 HOH HOH . D 4 HOH A 197 497 3 HOH HOH . D 4 HOH A 198 498 4 HOH HOH . D 4 HOH A 199 499 5 HOH HOH . D 4 HOH A 200 500 6 HOH HOH . D 4 HOH A 201 501 1 HOH HOH . D 4 HOH A 202 502 2 HOH HOH . D 4 HOH A 203 503 3 HOH HOH . D 4 HOH A 204 504 4 HOH HOH . D 4 HOH A 205 505 5 HOH HOH . D 4 HOH A 206 506 6 HOH HOH . D 4 HOH A 207 507 8 HOH HOH . D 4 HOH A 208 508 9 HOH HOH . D 4 HOH A 209 509 10 HOH HOH . D 4 HOH A 210 510 3 HOH HOH . D 4 HOH A 211 511 4 HOH HOH . D 4 HOH A 212 512 5 HOH HOH . D 4 HOH A 213 513 1 HOH HOH . D 4 HOH A 214 514 2 HOH HOH . D 4 HOH A 215 515 3 HOH HOH . D 4 HOH A 216 516 4 HOH HOH . D 4 HOH A 217 517 5 HOH HOH . D 4 HOH A 218 518 6 HOH HOH . D 4 HOH A 219 519 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 3NZ . . . C 3 -2.029 10.619 9.916 1 28 ? O 3NZ 202 A 1 HETATM 2 C C 3NZ . . . C 3 -2.547 11.309 10.749 1 32.5 ? C 3NZ 202 A 1 HETATM 3 C CA 3NZ . . . C 3 -1.707 11.027 12.021 1 37.46 ? CA 3NZ 202 A 1 HETATM 4 C CB 3NZ . . . C 3 -1.311 9.553 12.223 1 39.87 ? CB 3NZ 202 A 1 HETATM 5 C CG 3NZ . . . C 3 -2.367 8.52 11.918 1 44.59 ? CG 3NZ 202 A 1 HETATM 6 C CD2 3NZ . . . C 3 -3.709 8.845 11.794 1 44.11 ? CD2 3NZ 202 A 1 HETATM 7 C CE2 3NZ . . . C 3 -4.638 7.856 11.518 1 47.9 ? CE2 3NZ 202 A 1 HETATM 8 C CZ 3NZ . . . C 3 -4.24 6.543 11.359 1 45.68 ? CZ 3NZ 202 A 1 HETATM 9 O OM 3NZ . . . C 3 -5.181 5.597 11.071 1 52.41 ? OM 3NZ 202 A 1 HETATM 10 C CMZ 3NZ . . . C 3 -6.227 5.869 10.123 1 51.51 ? CMZ 3NZ 202 A 1 HETATM 11 C CE1 3NZ . . . C 3 -2.898 6.215 11.47 1 46.32 ? CE1 3NZ 202 A 1 HETATM 12 C CD1 3NZ . . . C 3 -1.961 7.207 11.752 1 43.85 ? CD1 3NZ 202 A 1 HETATM 13 N N 3NZ . . . C 3 -2.202 11.491 13.291 1 35.15 ? N 3NZ 202 A 1 HETATM 14 N N3' 3NZ . . . C 3 -3.701 12.146 10.667 1 26.03 ? N3' 3NZ 202 A 1 HETATM 15 C C3' 3NZ . . . C 3 -4.859 12.42 9.741 1 23.18 ? C3' 3NZ 202 A 1 HETATM 16 C C4' 3NZ . . . C 3 -5.008 11.66 8.402 1 22.92 ? C4' 3NZ 202 A 1 HETATM 17 C C5' 3NZ . . . C 3 -5.578 10.253 8.547 1 22.26 ? C5' 3NZ 202 A 1 HETATM 18 O O5' 3NZ . . . C 3 -6.955 10.296 8.939 1 23.02 ? O5' 3NZ 202 A 1 HETATM 19 C C2' 3NZ . . . C 3 -5.136 13.887 9.28 1 23.24 ? C2' 3NZ 202 A 1 HETATM 20 O O2' 3NZ . . . C 3 -4.087 14.812 9.571 1 20.92 ? O2' 3NZ 202 A 1 HETATM 21 C C1' 3NZ . . . C 3 -5.261 13.763 7.758 1 24.92 ? C1' 3NZ 202 A 1 HETATM 22 O O4' 3NZ . . . C 3 -5.859 12.487 7.577 1 22.47 ? O4' 3NZ 202 A 1 HETATM 23 N N9 3NZ . . . C 3 -5.918 14.895 7.067 1 29.44 ? N9 3NZ 202 A 1 HETATM 24 C C8 3NZ . . . C 3 -5.325 15.884 6.326 1 25.87 ? C8 3NZ 202 A 1 HETATM 25 N N7 3NZ . . . C 3 -6.282 16.712 5.855 1 31.94 ? N7 3NZ 202 A 1 HETATM 26 C C5 3NZ . . . C 3 -7.464 16.281 6.265 1 30.79 ? C5 3NZ 202 A 1 HETATM 27 C C4 3NZ . . . C 3 -7.194 15.072 7.063 1 30.68 ? C4 3NZ 202 A 1 HETATM 28 C C6 3NZ . . . C 3 -8.885 16.658 6.176 1 31.44 ? C6 3NZ 202 A 1 HETATM 29 N N6 3NZ . . . C 3 -9.391 17.74 5.498 1 29.83 ? N6 3NZ 202 A 1 HETATM 30 N N1 3NZ . . . C 3 -9.768 15.875 6.807 1 38.21 ? N1 3NZ 202 A 1 HETATM 31 C C2 3NZ . . . C 3 -9.433 14.801 7.508 1 36.48 ? C2 3NZ 202 A 1 HETATM 32 N N3 3NZ . . . C 3 -8.179 14.39 7.646 1 34.43 ? N3 3NZ 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #