data_4QBM
#
_model_server_result.job_id            yJdpiIFh1MAGfyaL14WU9g 
_model_server_result.datetime_utc      '2024-11-08 05:58:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2101}' 
#
_entry.id    4QBM 
#
_exptl.entry_id    4QBM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QBM 
_cell.length_a            64.869 
_cell.length_b            64.869 
_cell.length_c            71.637 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F,H 1 1 
B,D,E,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ALA 2 C ALA 15 1_555 C N ALY 3 C ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale2 C C ALY 3 C ALY 16 1_555 C N ARG 4 C ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 C C ARG 6 C ARG 19 1_555 C N ALY 7 C ALY 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 C C ALY 7 C ALY 20 1_555 C N VAL 8 C VAL 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 D C ALA 2 D ALA 15 1_555 D N ALY 3 D ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale6 D C ALY 3 D ALY 16 1_555 D N ARG 4 D ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale7 D C ARG 6 D ARG 19 1_555 D N ALY 7 D ALY 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 D C ALY 7 D ALY 20 1_555 D N VAL 8 D VAL 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 111 n n 
C1 C2 EDO sing 112 n n 
C1 H11 EDO sing 113 n n 
C1 H12 EDO sing 114 n n 
O1 HO1 EDO sing 115 n n 
C2 O2 EDO sing 116 n n 
C2 H21 EDO sing 117 n n 
C2 H22 EDO sing 118 n n 
O2 HO2 EDO sing 119 n n 
#
_atom_sites.entry_id                     4QBM 
_atom_sites.fract_transf_matrix[1][1]    0.015416 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO B 1 2101 1 EDO EDO . 
F 4 HOH A 1 2101 1 HOH HOH . 
F 4 HOH A 2 2102 2 HOH HOH . 
F 4 HOH A 3 2103 3 HOH HOH . 
F 4 HOH A 4 2104 4 HOH HOH . 
F 4 HOH A 5 2105 5 HOH HOH . 
F 4 HOH A 6 2106 6 HOH HOH . 
F 4 HOH A 7 2107 7 HOH HOH . 
F 4 HOH A 8 2108 8 HOH HOH . 
F 4 HOH A 9 2109 9 HOH HOH . 
F 4 HOH A 10 2110 10 HOH HOH . 
F 4 HOH A 11 2111 11 HOH HOH . 
F 4 HOH A 12 2112 12 HOH HOH . 
F 4 HOH A 13 2113 13 HOH HOH . 
F 4 HOH A 14 2114 14 HOH HOH . 
F 4 HOH A 15 2115 15 HOH HOH . 
F 4 HOH A 16 2116 16 HOH HOH . 
F 4 HOH A 17 2117 17 HOH HOH . 
F 4 HOH A 18 2118 18 HOH HOH . 
F 4 HOH A 19 2119 19 HOH HOH . 
F 4 HOH A 20 2120 20 HOH HOH . 
F 4 HOH A 21 2121 21 HOH HOH . 
F 4 HOH A 22 2122 22 HOH HOH . 
F 4 HOH A 23 2123 23 HOH HOH . 
F 4 HOH A 24 2124 24 HOH HOH . 
F 4 HOH A 25 2125 25 HOH HOH . 
F 4 HOH A 26 2126 27 HOH HOH . 
F 4 HOH A 27 2127 28 HOH HOH . 
F 4 HOH A 28 2128 29 HOH HOH . 
F 4 HOH A 29 2129 30 HOH HOH . 
F 4 HOH A 30 2130 31 HOH HOH . 
F 4 HOH A 31 2131 32 HOH HOH . 
F 4 HOH A 32 2132 33 HOH HOH . 
F 4 HOH A 33 2133 34 HOH HOH . 
F 4 HOH A 34 2134 35 HOH HOH . 
F 4 HOH A 35 2135 36 HOH HOH . 
F 4 HOH A 36 2136 37 HOH HOH . 
F 4 HOH A 37 2137 39 HOH HOH . 
F 4 HOH A 38 2138 40 HOH HOH . 
F 4 HOH A 39 2139 41 HOH HOH . 
F 4 HOH A 40 2140 42 HOH HOH . 
F 4 HOH A 41 2141 43 HOH HOH . 
F 4 HOH A 42 2142 44 HOH HOH . 
F 4 HOH A 43 2143 46 HOH HOH . 
F 4 HOH A 44 2144 47 HOH HOH . 
F 4 HOH A 45 2145 48 HOH HOH . 
F 4 HOH A 46 2146 50 HOH HOH . 
F 4 HOH A 47 2147 52 HOH HOH . 
F 4 HOH A 48 2148 53 HOH HOH . 
F 4 HOH A 49 2149 56 HOH HOH . 
F 4 HOH A 50 2150 57 HOH HOH . 
F 4 HOH A 51 2151 63 HOH HOH . 
F 4 HOH A 52 2152 68 HOH HOH . 
F 4 HOH A 53 2153 69 HOH HOH . 
F 4 HOH A 54 2154 70 HOH HOH . 
F 4 HOH A 55 2155 71 HOH HOH . 
F 4 HOH A 56 2156 72 HOH HOH . 
F 4 HOH A 57 2157 73 HOH HOH . 
F 4 HOH A 58 2158 98 HOH HOH . 
F 4 HOH A 59 2159 99 HOH HOH . 
F 4 HOH A 60 2160 100 HOH HOH . 
F 4 HOH A 61 2161 102 HOH HOH . 
F 4 HOH A 62 2162 104 HOH HOH . 
F 4 HOH A 63 2163 111 HOH HOH . 
F 4 HOH A 64 2164 113 HOH HOH . 
F 4 HOH A 65 2165 114 HOH HOH . 
F 4 HOH A 66 2166 117 HOH HOH . 
F 4 HOH A 67 2167 119 HOH HOH . 
F 4 HOH A 68 2168 121 HOH HOH . 
F 4 HOH A 69 2169 123 HOH HOH . 
F 4 HOH A 70 2170 126 HOH HOH . 
F 4 HOH A 71 2171 129 HOH HOH . 
F 4 HOH A 72 2172 130 HOH HOH . 
F 4 HOH A 73 2173 154 HOH HOH . 
F 4 HOH A 74 2174 164 HOH HOH . 
F 4 HOH A 75 2175 165 HOH HOH . 
F 4 HOH A 76 2176 166 HOH HOH . 
F 4 HOH A 77 2177 167 HOH HOH . 
F 4 HOH A 78 2178 168 HOH HOH . 
F 4 HOH A 79 2179 169 HOH HOH . 
F 4 HOH A 80 2180 172 HOH HOH . 
F 4 HOH A 81 2181 173 HOH HOH . 
F 4 HOH A 82 2182 174 HOH HOH . 
F 4 HOH A 83 2183 175 HOH HOH . 
F 4 HOH A 84 2184 178 HOH HOH . 
F 4 HOH A 85 2185 179 HOH HOH . 
F 4 HOH A 86 2186 180 HOH HOH . 
F 4 HOH A 87 2187 181 HOH HOH . 
F 4 HOH A 88 2188 182 HOH HOH . 
F 4 HOH A 89 2189 183 HOH HOH . 
F 4 HOH A 90 2190 184 HOH HOH . 
F 4 HOH A 91 2191 185 HOH HOH . 
F 4 HOH A 92 2192 186 HOH HOH . 
F 4 HOH A 93 2193 187 HOH HOH . 
F 4 HOH A 94 2194 188 HOH HOH . 
F 4 HOH A 95 2195 189 HOH HOH . 
F 4 HOH A 96 2196 190 HOH HOH . 
F 4 HOH A 97 2197 191 HOH HOH . 
F 4 HOH A 98 2198 192 HOH HOH . 
F 4 HOH A 99 2199 193 HOH HOH . 
F 4 HOH A 100 2200 194 HOH HOH . 
F 4 HOH A 101 2201 195 HOH HOH . 
F 4 HOH A 102 2202 196 HOH HOH . 
F 4 HOH A 103 2203 197 HOH HOH . 
F 4 HOH A 104 2204 203 HOH HOH . 
F 4 HOH A 105 2205 217 HOH HOH . 
F 4 HOH A 106 2206 219 HOH HOH . 
F 4 HOH A 107 2207 220 HOH HOH . 
F 4 HOH A 108 2208 224 HOH HOH . 
F 4 HOH A 109 2209 74 HOH HOH . 
G 4 HOH B 1 2201 26 HOH HOH . 
G 4 HOH B 2 2202 38 HOH HOH . 
G 4 HOH B 3 2203 45 HOH HOH . 
G 4 HOH B 4 2204 49 HOH HOH . 
G 4 HOH B 5 2205 51 HOH HOH . 
G 4 HOH B 6 2206 54 HOH HOH . 
G 4 HOH B 7 2207 55 HOH HOH . 
G 4 HOH B 8 2208 58 HOH HOH . 
G 4 HOH B 9 2209 59 HOH HOH . 
G 4 HOH B 10 2210 60 HOH HOH . 
G 4 HOH B 11 2211 61 HOH HOH . 
G 4 HOH B 12 2212 62 HOH HOH . 
G 4 HOH B 13 2213 65 HOH HOH . 
G 4 HOH B 14 2214 75 HOH HOH . 
G 4 HOH B 15 2215 76 HOH HOH . 
G 4 HOH B 16 2216 77 HOH HOH . 
G 4 HOH B 17 2217 78 HOH HOH . 
G 4 HOH B 18 2218 79 HOH HOH . 
G 4 HOH B 19 2219 80 HOH HOH . 
G 4 HOH B 20 2220 81 HOH HOH . 
G 4 HOH B 21 2221 82 HOH HOH . 
G 4 HOH B 22 2222 83 HOH HOH . 
G 4 HOH B 23 2223 84 HOH HOH . 
G 4 HOH B 24 2224 85 HOH HOH . 
G 4 HOH B 25 2225 86 HOH HOH . 
G 4 HOH B 26 2226 87 HOH HOH . 
G 4 HOH B 27 2227 88 HOH HOH . 
G 4 HOH B 28 2228 89 HOH HOH . 
G 4 HOH B 29 2229 90 HOH HOH . 
G 4 HOH B 30 2230 91 HOH HOH . 
G 4 HOH B 31 2231 92 HOH HOH . 
G 4 HOH B 32 2232 93 HOH HOH . 
G 4 HOH B 33 2233 94 HOH HOH . 
G 4 HOH B 34 2234 95 HOH HOH . 
G 4 HOH B 35 2235 96 HOH HOH . 
G 4 HOH B 36 2236 105 HOH HOH . 
G 4 HOH B 37 2237 106 HOH HOH . 
G 4 HOH B 38 2238 107 HOH HOH . 
G 4 HOH B 39 2239 109 HOH HOH . 
G 4 HOH B 40 2240 110 HOH HOH . 
G 4 HOH B 41 2241 112 HOH HOH . 
G 4 HOH B 42 2242 116 HOH HOH . 
G 4 HOH B 43 2243 118 HOH HOH . 
G 4 HOH B 44 2244 120 HOH HOH . 
G 4 HOH B 45 2245 122 HOH HOH . 
G 4 HOH B 46 2246 124 HOH HOH . 
G 4 HOH B 47 2247 125 HOH HOH . 
G 4 HOH B 48 2248 131 HOH HOH . 
G 4 HOH B 49 2249 132 HOH HOH . 
G 4 HOH B 50 2250 133 HOH HOH . 
G 4 HOH B 51 2251 134 HOH HOH . 
G 4 HOH B 52 2252 135 HOH HOH . 
G 4 HOH B 53 2253 136 HOH HOH . 
G 4 HOH B 54 2254 137 HOH HOH . 
G 4 HOH B 55 2255 138 HOH HOH . 
G 4 HOH B 56 2256 139 HOH HOH . 
G 4 HOH B 57 2257 140 HOH HOH . 
G 4 HOH B 58 2258 141 HOH HOH . 
G 4 HOH B 59 2259 142 HOH HOH . 
G 4 HOH B 60 2260 143 HOH HOH . 
G 4 HOH B 61 2261 144 HOH HOH . 
G 4 HOH B 62 2262 145 HOH HOH . 
G 4 HOH B 63 2263 146 HOH HOH . 
G 4 HOH B 64 2264 147 HOH HOH . 
G 4 HOH B 65 2265 148 HOH HOH . 
G 4 HOH B 66 2266 149 HOH HOH . 
G 4 HOH B 67 2267 150 HOH HOH . 
G 4 HOH B 68 2268 151 HOH HOH . 
G 4 HOH B 69 2269 152 HOH HOH . 
G 4 HOH B 70 2270 153 HOH HOH . 
G 4 HOH B 71 2271 155 HOH HOH . 
G 4 HOH B 72 2272 156 HOH HOH . 
G 4 HOH B 73 2273 157 HOH HOH . 
G 4 HOH B 74 2274 158 HOH HOH . 
G 4 HOH B 75 2275 159 HOH HOH . 
G 4 HOH B 76 2276 160 HOH HOH . 
G 4 HOH B 77 2277 161 HOH HOH . 
G 4 HOH B 78 2278 162 HOH HOH . 
G 4 HOH B 79 2279 163 HOH HOH . 
G 4 HOH B 80 2280 170 HOH HOH . 
G 4 HOH B 81 2281 171 HOH HOH . 
G 4 HOH B 82 2282 176 HOH HOH . 
G 4 HOH B 83 2283 177 HOH HOH . 
G 4 HOH B 84 2284 198 HOH HOH . 
G 4 HOH B 85 2285 199 HOH HOH . 
G 4 HOH B 86 2286 200 HOH HOH . 
G 4 HOH B 87 2287 201 HOH HOH . 
G 4 HOH B 88 2288 202 HOH HOH . 
G 4 HOH B 89 2289 204 HOH HOH . 
G 4 HOH B 90 2290 205 HOH HOH . 
G 4 HOH B 91 2291 206 HOH HOH . 
G 4 HOH B 92 2292 210 HOH HOH . 
G 4 HOH B 93 2293 211 HOH HOH . 
G 4 HOH B 94 2294 212 HOH HOH . 
G 4 HOH B 95 2295 213 HOH HOH . 
G 4 HOH B 96 2296 215 HOH HOH . 
G 4 HOH B 97 2297 216 HOH HOH . 
G 4 HOH B 98 2298 218 HOH HOH . 
G 4 HOH B 99 2299 221 HOH HOH . 
G 4 HOH B 100 2300 222 HOH HOH . 
G 4 HOH B 101 2301 103 HOH HOH . 
H 4 HOH C 1 101 64 HOH HOH . 
H 4 HOH C 2 102 66 HOH HOH . 
H 4 HOH C 3 103 67 HOH HOH . 
H 4 HOH C 4 104 97 HOH HOH . 
H 4 HOH C 5 105 101 HOH HOH . 
H 4 HOH C 6 106 127 HOH HOH . 
H 4 HOH C 7 107 128 HOH HOH . 
H 4 HOH C 8 108 214 HOH HOH . 
H 4 HOH C 9 109 223 HOH HOH . 
I 4 HOH D 1 101 108 HOH HOH . 
I 4 HOH D 2 102 115 HOH HOH . 
I 4 HOH D 3 103 207 HOH HOH . 
I 4 HOH D 4 104 208 HOH HOH . 
I 4 HOH D 5 105 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 23.787 -27.383 -65.076 1 45.17 ? C1 EDO 2101 B 1 
HETATM 2 O O1 EDO . . . E 3 22.623 -26.831 -64.458 1 41.55 ? O1 EDO 2101 B 1 
HETATM 3 C C2 EDO . . . E 3 24.319 -26.4 -66.113 1 44.8 ? C2 EDO 2101 B 1 
HETATM 4 O O2 EDO . . . E 3 24.133 -25.055 -65.637 1 45.97 ? O2 EDO 2101 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#