data_4QC2 # _model_server_result.job_id KOS6VTgHJVlVEhx_aJZQXA _model_server_result.datetime_utc '2025-01-27 15:21:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4QC2 # _exptl.entry_id 4QC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QC2 _cell.length_a 85.16 _cell.length_b 125.76 _cell.length_c 89.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 43 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A OE1 GLN 85 A GLN 85 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 C O2G ATP . A ATP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 C O1B ATP . A ATP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 D MG MG . A MG 302 1_555 G O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 D MG MG . A MG 302 1_555 G O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc7 B OG1 THR 43 B THR 43 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 B OE1 GLN 85 B GLN 85 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc9 E O1B ATP . B ATP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc10 E O2G ATP . B ATP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 F MG MG . B MG 302 1_555 H O HOH . B HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc12 F MG MG . B MG 302 1_555 H O HOH . B HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4QC2 _atom_sites.fract_transf_matrix[1][1] 0.011743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 301 600 ATP ATP . D 3 MG A 1 302 1 MG MG . E 2 ATP B 1 301 600 ATP ATP . F 3 MG B 1 302 1 MG MG . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 6 HOH HOH . G 4 HOH A 3 403 7 HOH HOH . G 4 HOH A 4 404 9 HOH HOH . G 4 HOH A 5 405 10 HOH HOH . G 4 HOH A 6 406 11 HOH HOH . G 4 HOH A 7 407 13 HOH HOH . G 4 HOH A 8 408 14 HOH HOH . G 4 HOH A 9 409 16 HOH HOH . G 4 HOH A 10 410 17 HOH HOH . G 4 HOH A 11 411 20 HOH HOH . G 4 HOH A 12 412 21 HOH HOH . G 4 HOH A 13 413 22 HOH HOH . G 4 HOH A 14 414 23 HOH HOH . G 4 HOH A 15 415 24 HOH HOH . G 4 HOH A 16 416 25 HOH HOH . G 4 HOH A 17 417 27 HOH HOH . G 4 HOH A 18 418 28 HOH HOH . G 4 HOH A 19 419 29 HOH HOH . G 4 HOH A 20 420 31 HOH HOH . G 4 HOH A 21 421 32 HOH HOH . G 4 HOH A 22 422 33 HOH HOH . G 4 HOH A 23 423 34 HOH HOH . G 4 HOH A 24 424 37 HOH HOH . G 4 HOH A 25 425 38 HOH HOH . G 4 HOH A 26 426 41 HOH HOH . G 4 HOH A 27 427 42 HOH HOH . G 4 HOH A 28 428 43 HOH HOH . G 4 HOH A 29 429 45 HOH HOH . G 4 HOH A 30 430 46 HOH HOH . G 4 HOH A 31 431 47 HOH HOH . G 4 HOH A 32 432 49 HOH HOH . G 4 HOH A 33 433 53 HOH HOH . G 4 HOH A 34 434 56 HOH HOH . G 4 HOH A 35 435 61 HOH HOH . G 4 HOH A 36 436 62 HOH HOH . G 4 HOH A 37 437 63 HOH HOH . G 4 HOH A 38 438 68 HOH HOH . G 4 HOH A 39 439 70 HOH HOH . G 4 HOH A 40 440 72 HOH HOH . G 4 HOH A 41 441 74 HOH HOH . G 4 HOH A 42 442 75 HOH HOH . G 4 HOH A 43 443 79 HOH HOH . G 4 HOH A 44 444 83 HOH HOH . G 4 HOH A 45 445 85 HOH HOH . G 4 HOH A 46 446 90 HOH HOH . G 4 HOH A 47 447 91 HOH HOH . G 4 HOH A 48 448 92 HOH HOH . G 4 HOH A 49 449 95 HOH HOH . G 4 HOH A 50 450 96 HOH HOH . G 4 HOH A 51 451 100 HOH HOH . G 4 HOH A 52 452 115 HOH HOH . G 4 HOH A 53 453 117 HOH HOH . G 4 HOH A 54 454 118 HOH HOH . G 4 HOH A 55 455 119 HOH HOH . G 4 HOH A 56 456 121 HOH HOH . G 4 HOH A 57 457 125 HOH HOH . G 4 HOH A 58 458 126 HOH HOH . G 4 HOH A 59 459 128 HOH HOH . G 4 HOH A 60 460 129 HOH HOH . G 4 HOH A 61 461 131 HOH HOH . G 4 HOH A 62 462 132 HOH HOH . G 4 HOH A 63 463 133 HOH HOH . G 4 HOH A 64 464 134 HOH HOH . G 4 HOH A 65 465 135 HOH HOH . G 4 HOH A 66 466 137 HOH HOH . G 4 HOH A 67 467 139 HOH HOH . G 4 HOH A 68 468 141 HOH HOH . G 4 HOH A 69 469 146 HOH HOH . G 4 HOH A 70 470 147 HOH HOH . G 4 HOH A 71 471 148 HOH HOH . G 4 HOH A 72 472 149 HOH HOH . G 4 HOH A 73 473 150 HOH HOH . G 4 HOH A 74 474 152 HOH HOH . G 4 HOH A 75 475 156 HOH HOH . G 4 HOH A 76 476 157 HOH HOH . G 4 HOH A 77 477 159 HOH HOH . G 4 HOH A 78 478 160 HOH HOH . G 4 HOH A 79 479 163 HOH HOH . G 4 HOH A 80 480 164 HOH HOH . G 4 HOH A 81 481 165 HOH HOH . G 4 HOH A 82 482 167 HOH HOH . G 4 HOH A 83 483 169 HOH HOH . G 4 HOH A 84 484 171 HOH HOH . G 4 HOH A 85 485 172 HOH HOH . G 4 HOH A 86 486 173 HOH HOH . G 4 HOH A 87 487 174 HOH HOH . G 4 HOH A 88 488 180 HOH HOH . G 4 HOH A 89 489 183 HOH HOH . G 4 HOH A 90 490 1 HOH HOH . G 4 HOH A 91 491 2 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 3 HOH HOH . H 4 HOH B 3 403 4 HOH HOH . H 4 HOH B 4 404 5 HOH HOH . H 4 HOH B 5 405 8 HOH HOH . H 4 HOH B 6 406 15 HOH HOH . H 4 HOH B 7 407 19 HOH HOH . H 4 HOH B 8 408 30 HOH HOH . H 4 HOH B 9 409 35 HOH HOH . H 4 HOH B 10 410 36 HOH HOH . H 4 HOH B 11 411 39 HOH HOH . H 4 HOH B 12 412 44 HOH HOH . H 4 HOH B 13 413 48 HOH HOH . H 4 HOH B 14 414 51 HOH HOH . H 4 HOH B 15 415 52 HOH HOH . H 4 HOH B 16 416 54 HOH HOH . H 4 HOH B 17 417 55 HOH HOH . H 4 HOH B 18 418 58 HOH HOH . H 4 HOH B 19 419 60 HOH HOH . H 4 HOH B 20 420 66 HOH HOH . H 4 HOH B 21 421 67 HOH HOH . H 4 HOH B 22 422 71 HOH HOH . H 4 HOH B 23 423 73 HOH HOH . H 4 HOH B 24 424 76 HOH HOH . H 4 HOH B 25 425 78 HOH HOH . H 4 HOH B 26 426 86 HOH HOH . H 4 HOH B 27 427 87 HOH HOH . H 4 HOH B 28 428 88 HOH HOH . H 4 HOH B 29 429 93 HOH HOH . H 4 HOH B 30 430 99 HOH HOH . H 4 HOH B 31 431 104 HOH HOH . H 4 HOH B 32 432 105 HOH HOH . H 4 HOH B 33 433 106 HOH HOH . H 4 HOH B 34 434 107 HOH HOH . H 4 HOH B 35 435 108 HOH HOH . H 4 HOH B 36 436 109 HOH HOH . H 4 HOH B 37 437 110 HOH HOH . H 4 HOH B 38 438 113 HOH HOH . H 4 HOH B 39 439 114 HOH HOH . H 4 HOH B 40 440 120 HOH HOH . H 4 HOH B 41 441 127 HOH HOH . H 4 HOH B 42 442 136 HOH HOH . H 4 HOH B 43 443 142 HOH HOH . H 4 HOH B 44 444 143 HOH HOH . H 4 HOH B 45 445 145 HOH HOH . H 4 HOH B 46 446 151 HOH HOH . H 4 HOH B 47 447 153 HOH HOH . H 4 HOH B 48 448 158 HOH HOH . H 4 HOH B 49 449 162 HOH HOH . H 4 HOH B 50 450 166 HOH HOH . H 4 HOH B 51 451 170 HOH HOH . H 4 HOH B 52 452 3 HOH HOH . H 4 HOH B 53 453 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 50.123 13.354 74.212 1 59.76 ? PG ATP 301 B 1 HETATM 2 O O1G ATP . . . E 2 50.164 11.798 73.981 1 50.05 ? O1G ATP 301 B 1 HETATM 3 O O2G ATP . . . E 2 50.144 14.278 72.97 1 45.12 ? O2G ATP 301 B 1 HETATM 4 O O3G ATP . . . E 2 49.023 13.814 75.258 1 40.81 ? O3G ATP 301 B 1 HETATM 5 P PB ATP . . . E 2 53.046 14.24 74.694 1 41.2 ? PB ATP 301 B 1 HETATM 6 O O1B ATP . . . E 2 53.117 14.818 73.29 1 47.63 ? O1B ATP 301 B 1 HETATM 7 O O2B ATP . . . E 2 54.137 13.243 75.049 1 45.52 ? O2B ATP 301 B 1 HETATM 8 O O3B ATP . . . E 2 51.564 13.61 74.996 1 39.28 ? O3B ATP 301 B 1 HETATM 9 P PA ATP . . . E 2 54.131 16.746 75.551 1 41.7 ? PA ATP 301 B 1 HETATM 10 O O1A ATP . . . E 2 55.574 16.519 75.148 1 44.16 ? O1A ATP 301 B 1 HETATM 11 O O2A ATP . . . E 2 53.191 17.554 74.658 1 39.93 ? O2A ATP 301 B 1 HETATM 12 O O3A ATP . . . E 2 53.362 15.373 75.761 1 33.55 ? O3A ATP 301 B 1 HETATM 13 O O5' ATP . . . E 2 54.211 17.439 76.967 1 37.42 ? O5' ATP 301 B 1 HETATM 14 C C5' ATP . . . E 2 54.638 16.662 78.085 1 39.92 ? C5' ATP 301 B 1 HETATM 15 C C4' ATP . . . E 2 54.342 17.316 79.459 1 39.95 ? C4' ATP 301 B 1 HETATM 16 O O4' ATP . . . E 2 54.88 18.613 79.58 1 38.99 ? O4' ATP 301 B 1 HETATM 17 C C3' ATP . . . E 2 52.861 17.467 79.574 1 43.34 ? C3' ATP 301 B 1 HETATM 18 O O3' ATP . . . E 2 52.468 16.874 80.8 1 49.12 ? O3' ATP 301 B 1 HETATM 19 C C2' ATP . . . E 2 52.599 18.953 79.471 1 38.59 ? C2' ATP 301 B 1 HETATM 20 O O2' ATP . . . E 2 51.481 19.324 80.257 1 40.82 ? O2' ATP 301 B 1 HETATM 21 C C1' ATP . . . E 2 53.883 19.582 79.953 1 40.06 ? C1' ATP 301 B 1 HETATM 22 N N9 ATP . . . E 2 54.087 20.913 79.298 1 39.12 ? N9 ATP 301 B 1 HETATM 23 C C8 ATP . . . E 2 54.145 21.152 77.956 1 35.93 ? C8 ATP 301 B 1 HETATM 24 N N7 ATP . . . E 2 54.362 22.469 77.668 1 35.04 ? N7 ATP 301 B 1 HETATM 25 C C5 ATP . . . E 2 54.417 23.143 78.826 1 37.93 ? C5 ATP 301 B 1 HETATM 26 C C6 ATP . . . E 2 54.627 24.537 79.26 1 40.03 ? C6 ATP 301 B 1 HETATM 27 N N6 ATP . . . E 2 54.827 25.583 78.418 1 40.41 ? N6 ATP 301 B 1 HETATM 28 N N1 ATP . . . E 2 54.666 24.778 80.586 1 44.65 ? N1 ATP 301 B 1 HETATM 29 C C2 ATP . . . E 2 54.508 23.83 81.52 1 42.34 ? C2 ATP 301 B 1 HETATM 30 N N3 ATP . . . E 2 54.302 22.546 81.189 1 43.91 ? N3 ATP 301 B 1 HETATM 31 C C4 ATP . . . E 2 54.262 22.117 79.898 1 43.17 ? C4 ATP 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #