data_4QCK # _model_server_result.job_id 16ABKFEN-NdREKfdVKa5KQ _model_server_result.datetime_utc '2024-11-24 12:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4QCK # _exptl.entry_id 4QCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QCK _cell.length_a 115.8 _cell.length_b 115.8 _cell.length_c 80.81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -57.9 100.285742 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -115.8 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 67 A CYS 67 1_555 C FE2 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A ND1 HIS 69 A HIS 69 1_555 C FE1 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A SG CYS 86 A CYS 86 1_555 C FE2 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 A ND1 HIS 89 A HIS 89 1_555 C FE1 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 A NE2 HIS 181 A HIS 181 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 A OD2 ASP 304 A ASP 304 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc7 A OD1 ASP 304 A ASP 304 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 B FE FE . A FE 401 1_555 F O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 133 n n FE1 S2 FES sing 134 n n FE2 S1 FES sing 135 n n FE2 S2 FES sing 136 n n # _atom_sites.entry_id 4QCK _atom_sites.fract_transf_matrix[1][1] 0.008636 _atom_sites.fract_transf_matrix[1][2] 0.004986 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 376 FE FE . C 3 FES A 1 402 377 FES FES . D 4 PO4 A 1 403 1 PO4 PO4 . E 5 ASD A 1 404 1 ASD ASD . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 10 HOH HOH . F 6 HOH A 9 509 11 HOH HOH . F 6 HOH A 10 510 12 HOH HOH . F 6 HOH A 11 511 13 HOH HOH . F 6 HOH A 12 512 14 HOH HOH . F 6 HOH A 13 513 15 HOH HOH . F 6 HOH A 14 514 17 HOH HOH . F 6 HOH A 15 515 18 HOH HOH . F 6 HOH A 16 516 19 HOH HOH . F 6 HOH A 17 517 22 HOH HOH . F 6 HOH A 18 518 23 HOH HOH . F 6 HOH A 19 519 24 HOH HOH . F 6 HOH A 20 520 25 HOH HOH . F 6 HOH A 21 521 26 HOH HOH . F 6 HOH A 22 522 27 HOH HOH . F 6 HOH A 23 523 28 HOH HOH . F 6 HOH A 24 524 29 HOH HOH . F 6 HOH A 25 525 31 HOH HOH . F 6 HOH A 26 526 32 HOH HOH . F 6 HOH A 27 527 33 HOH HOH . F 6 HOH A 28 528 34 HOH HOH . F 6 HOH A 29 529 35 HOH HOH . F 6 HOH A 30 530 36 HOH HOH . F 6 HOH A 31 531 38 HOH HOH . F 6 HOH A 32 532 40 HOH HOH . F 6 HOH A 33 533 41 HOH HOH . F 6 HOH A 34 534 42 HOH HOH . F 6 HOH A 35 535 43 HOH HOH . F 6 HOH A 36 536 44 HOH HOH . F 6 HOH A 37 537 45 HOH HOH . F 6 HOH A 38 538 46 HOH HOH . F 6 HOH A 39 539 47 HOH HOH . F 6 HOH A 40 540 48 HOH HOH . F 6 HOH A 41 541 49 HOH HOH . F 6 HOH A 42 542 50 HOH HOH . F 6 HOH A 43 543 51 HOH HOH . F 6 HOH A 44 544 52 HOH HOH . F 6 HOH A 45 545 53 HOH HOH . F 6 HOH A 46 546 54 HOH HOH . F 6 HOH A 47 547 56 HOH HOH . F 6 HOH A 48 548 57 HOH HOH . F 6 HOH A 49 549 58 HOH HOH . F 6 HOH A 50 550 59 HOH HOH . F 6 HOH A 51 551 60 HOH HOH . F 6 HOH A 52 552 61 HOH HOH . F 6 HOH A 53 553 62 HOH HOH . F 6 HOH A 54 554 63 HOH HOH . F 6 HOH A 55 555 66 HOH HOH . F 6 HOH A 56 556 67 HOH HOH . F 6 HOH A 57 557 68 HOH HOH . F 6 HOH A 58 558 71 HOH HOH . F 6 HOH A 59 559 72 HOH HOH . F 6 HOH A 60 560 73 HOH HOH . F 6 HOH A 61 561 74 HOH HOH . F 6 HOH A 62 562 75 HOH HOH . F 6 HOH A 63 563 77 HOH HOH . F 6 HOH A 64 564 78 HOH HOH . F 6 HOH A 65 565 79 HOH HOH . F 6 HOH A 66 566 80 HOH HOH . F 6 HOH A 67 567 81 HOH HOH . F 6 HOH A 68 568 82 HOH HOH . F 6 HOH A 69 569 84 HOH HOH . F 6 HOH A 70 570 85 HOH HOH . F 6 HOH A 71 571 86 HOH HOH . F 6 HOH A 72 572 87 HOH HOH . F 6 HOH A 73 573 89 HOH HOH . F 6 HOH A 74 574 90 HOH HOH . F 6 HOH A 75 575 92 HOH HOH . F 6 HOH A 76 576 93 HOH HOH . F 6 HOH A 77 577 94 HOH HOH . F 6 HOH A 78 578 95 HOH HOH . F 6 HOH A 79 579 97 HOH HOH . F 6 HOH A 80 580 103 HOH HOH . F 6 HOH A 81 581 104 HOH HOH . F 6 HOH A 82 582 107 HOH HOH . F 6 HOH A 83 583 108 HOH HOH . F 6 HOH A 84 584 109 HOH HOH . F 6 HOH A 85 585 110 HOH HOH . F 6 HOH A 86 586 111 HOH HOH . F 6 HOH A 87 587 112 HOH HOH . F 6 HOH A 88 588 114 HOH HOH . F 6 HOH A 89 589 115 HOH HOH . F 6 HOH A 90 590 118 HOH HOH . F 6 HOH A 91 591 121 HOH HOH . F 6 HOH A 92 592 123 HOH HOH . F 6 HOH A 93 593 124 HOH HOH . F 6 HOH A 94 594 126 HOH HOH . F 6 HOH A 95 595 129 HOH HOH . F 6 HOH A 96 596 131 HOH HOH . F 6 HOH A 97 597 133 HOH HOH . F 6 HOH A 98 598 134 HOH HOH . F 6 HOH A 99 599 136 HOH HOH . F 6 HOH A 100 600 137 HOH HOH . F 6 HOH A 101 601 138 HOH HOH . F 6 HOH A 102 602 139 HOH HOH . F 6 HOH A 103 603 143 HOH HOH . F 6 HOH A 104 604 149 HOH HOH . F 6 HOH A 105 605 150 HOH HOH . F 6 HOH A 106 606 156 HOH HOH . F 6 HOH A 107 607 157 HOH HOH . F 6 HOH A 108 608 158 HOH HOH . F 6 HOH A 109 609 159 HOH HOH . F 6 HOH A 110 610 164 HOH HOH . F 6 HOH A 111 611 167 HOH HOH . F 6 HOH A 112 612 170 HOH HOH . F 6 HOH A 113 613 173 HOH HOH . F 6 HOH A 114 614 174 HOH HOH . F 6 HOH A 115 615 176 HOH HOH . F 6 HOH A 116 616 177 HOH HOH . F 6 HOH A 117 617 178 HOH HOH . F 6 HOH A 118 618 179 HOH HOH . F 6 HOH A 119 619 180 HOH HOH . F 6 HOH A 120 620 182 HOH HOH . F 6 HOH A 121 621 184 HOH HOH . F 6 HOH A 122 622 185 HOH HOH . F 6 HOH A 123 623 186 HOH HOH . F 6 HOH A 124 624 187 HOH HOH . F 6 HOH A 125 625 188 HOH HOH . F 6 HOH A 126 626 189 HOH HOH . F 6 HOH A 127 627 191 HOH HOH . F 6 HOH A 128 628 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . C 3 -64.96 3.897 12.558 1 36.73 ? FE1 FES 402 A 1 HETATM 2 FE FE2 FES . . . C 3 -62.225 4.63 13.018 1 35.4 ? FE2 FES 402 A 1 HETATM 3 S S1 FES . . . C 3 -63.993 5.901 12.635 1 33.14 ? S1 FES 402 A 1 HETATM 4 S S2 FES . . . C 3 -63.259 2.713 13.281 1 38.68 ? S2 FES 402 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 1132 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #