data_4QDN # _model_server_result.job_id 0BPwOWAYQYMjmpqDODk6tw _model_server_result.datetime_utc '2024-12-21 17:03:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4QDN # _exptl.entry_id 4QDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QDN _cell.length_a 46.56 _cell.length_b 61.194 _cell.length_c 101.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 50.6025 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 4QDN _atom_sites.fract_transf_matrix[1][1] 0.021477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 201 1 PO4 PO4 . C 3 MPD A 1 202 5276 MPD MPD . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 12 HOH HOH . D 4 HOH A 10 310 13 HOH HOH . D 4 HOH A 11 311 14 HOH HOH . D 4 HOH A 12 312 15 HOH HOH . D 4 HOH A 13 313 16 HOH HOH . D 4 HOH A 14 314 17 HOH HOH . D 4 HOH A 15 315 18 HOH HOH . D 4 HOH A 16 316 19 HOH HOH . D 4 HOH A 17 317 20 HOH HOH . D 4 HOH A 18 318 21 HOH HOH . D 4 HOH A 19 319 22 HOH HOH . D 4 HOH A 20 320 23 HOH HOH . D 4 HOH A 21 321 24 HOH HOH . D 4 HOH A 22 322 25 HOH HOH . D 4 HOH A 23 323 26 HOH HOH . D 4 HOH A 24 324 27 HOH HOH . D 4 HOH A 25 325 28 HOH HOH . D 4 HOH A 26 326 29 HOH HOH . D 4 HOH A 27 327 31 HOH HOH . D 4 HOH A 28 328 32 HOH HOH . D 4 HOH A 29 329 33 HOH HOH . D 4 HOH A 30 330 36 HOH HOH . D 4 HOH A 31 331 37 HOH HOH . D 4 HOH A 32 332 39 HOH HOH . D 4 HOH A 33 333 40 HOH HOH . D 4 HOH A 34 334 41 HOH HOH . D 4 HOH A 35 335 42 HOH HOH . D 4 HOH A 36 336 46 HOH HOH . D 4 HOH A 37 337 50 HOH HOH . D 4 HOH A 38 338 51 HOH HOH . D 4 HOH A 39 339 53 HOH HOH . D 4 HOH A 40 340 54 HOH HOH . D 4 HOH A 41 341 58 HOH HOH . D 4 HOH A 42 342 62 HOH HOH . D 4 HOH A 43 343 69 HOH HOH . D 4 HOH A 44 344 72 HOH HOH . D 4 HOH A 45 345 75 HOH HOH . D 4 HOH A 46 346 78 HOH HOH . D 4 HOH A 47 347 79 HOH HOH . D 4 HOH A 48 348 80 HOH HOH . D 4 HOH A 49 349 85 HOH HOH . D 4 HOH A 50 350 87 HOH HOH . D 4 HOH A 51 351 96 HOH HOH . D 4 HOH A 52 352 97 HOH HOH . D 4 HOH A 53 353 98 HOH HOH . D 4 HOH A 54 354 99 HOH HOH . D 4 HOH A 55 355 102 HOH HOH . D 4 HOH A 56 356 103 HOH HOH . D 4 HOH A 57 357 104 HOH HOH . D 4 HOH A 58 358 105 HOH HOH . D 4 HOH A 59 359 106 HOH HOH . D 4 HOH A 60 360 108 HOH HOH . D 4 HOH A 61 361 109 HOH HOH . D 4 HOH A 62 362 117 HOH HOH . D 4 HOH A 63 363 119 HOH HOH . D 4 HOH A 64 364 120 HOH HOH . D 4 HOH A 65 365 121 HOH HOH . D 4 HOH A 66 366 127 HOH HOH . D 4 HOH A 67 367 130 HOH HOH . D 4 HOH A 68 368 131 HOH HOH . D 4 HOH A 69 369 132 HOH HOH . D 4 HOH A 70 370 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 13.66 4.037 10.533 1 58.18 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 13.186 5.483 10.411 1 55.76 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 14.333 6.323 10.129 1 58.42 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 12.215 5.634 9.245 1 47.34 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 12.502 5.931 11.705 1 53.77 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 13.452 6.483 12.765 1 54.85 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 14.194 7.564 12.243 1 65.56 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 12.669 6.966 13.986 1 35.28 ? C5 MPD 202 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #