data_4QDV # _model_server_result.job_id 5uP0KhKztshADZcTB99Wmw _model_server_result.datetime_utc '2024-11-07 15:53:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":404}' # _entry.id 4QDV # _exptl.entry_id 4QDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QDV _cell.length_a 101.09 _cell.length_b 105.51 _cell.length_c 140 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K 1 1 C,D,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 143 A TYR 143 1_555 E S1 30U . A 30U 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? covale ? covale2 D OH TYR 143 D TYR 143 1_555 N S1 30U . D 30U 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 169 n n C1 C2 GOL sing 170 n n C1 H11 GOL sing 171 n n C1 H12 GOL sing 172 n n O1 HO1 GOL sing 173 n n C2 O2 GOL sing 174 n n C2 C3 GOL sing 175 n n C2 H2 GOL sing 176 n n O2 HO2 GOL sing 177 n n C3 O3 GOL sing 178 n n C3 H31 GOL sing 179 n n C3 H32 GOL sing 180 n n O3 HO3 GOL sing 181 n n # _atom_sites.entry_id 4QDV _atom_sites.fract_transf_matrix[1][1] 0.009892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 30U A 1 401 900 30U PFE . F 3 PO4 A 1 402 1 PO4 PO4 . G 3 PO4 A 1 403 4 PO4 PO4 . H 3 PO4 A 1 404 10 PO4 PO4 . I 3 PO4 B 1 401 2 PO4 PO4 . J 3 PO4 B 1 402 5 PO4 PO4 . K 3 PO4 B 1 403 9 PO4 PO4 . L 3 PO4 C 1 401 3 PO4 PO4 . M 3 PO4 C 1 402 6 PO4 PO4 . N 2 30U D 1 401 900 30U PFE . O 3 PO4 D 1 402 7 PO4 PO4 . P 3 PO4 D 1 403 8 PO4 PO4 . Q 4 GOL D 1 404 1 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 4 88.818 20.158 52.165 1 101.26 ? C1 GOL 404 D 1 HETATM 2 O O1 GOL . . . Q 4 88.47 20.834 53.372 1 98.93 ? O1 GOL 404 D 1 HETATM 3 C C2 GOL . . . Q 4 90.099 20.679 51.543 1 102.39 ? C2 GOL 404 D 1 HETATM 4 O O2 GOL . . . Q 4 90.031 22.102 51.38 1 104.03 ? O2 GOL 404 D 1 HETATM 5 C C3 GOL . . . Q 4 91.362 20.293 52.282 1 99.15 ? C3 GOL 404 D 1 HETATM 6 O O3 GOL . . . Q 4 92.479 20.252 51.396 1 94.8 ? O3 GOL 404 D 1 HETATM 7 H H11 GOL . . . Q 4 88.889 19.087 52.345 1 101.31 ? H11 GOL 404 D 1 HETATM 8 H H12 GOL . . . Q 4 88.001 20.275 51.454 1 101.33 ? H12 GOL 404 D 1 HETATM 9 H HO1 GOL . . . Q 4 87.573 20.494 53.627 1 98.43 ? HO1 GOL 404 D 1 HETATM 10 H H2 GOL . . . Q 4 90.187 20.369 50.503 1 102.59 ? H2 GOL 404 D 1 HETATM 11 H HO2 GOL . . . Q 4 90.447 22.352 50.513 1 104.05 ? HO2 GOL 404 D 1 HETATM 12 H H31 GOL . . . Q 4 91.56 20.985 53.099 1 99.29 ? H31 GOL 404 D 1 HETATM 13 H H32 GOL . . . Q 4 91.235 19.318 52.749 1 99.26 ? H32 GOL 404 D 1 HETATM 14 H HO3 GOL . . . Q 4 93.2 19.78 51.888 1 94.43 ? HO3 GOL 404 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #