data_4QET # _model_server_result.job_id EQg2frl-l67xmIkvmvyj6g _model_server_result.datetime_utc '2024-10-20 20:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 4QET # _exptl.entry_id 4QET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.87 _cell.angle_gamma 90 _cell.entry_id 4QET _cell.length_a 83.139 _cell.length_b 93.099 _cell.length_c 145.085 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QET _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 39 A THR 39 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc2 A O TYR 40 A TYR 40 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc3 A OD1 ASP 108 A ASP 108 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc4 A O ASP 108 A ASP 108 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc5 A O GLN 195 A GLN 195 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 A O ILE 260 A ILE 260 1_555 J NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc7 A O LYS 467 A LYS 467 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 A O GLY 470 A GLY 470 1_555 F NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc9 E NA NA . A NA 501 1_555 M O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc10 F NA NA . A NA 502 1_555 C O ILE 260 C ILE 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc11 F NA NA . A NA 502 1_555 O O HOH . C HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc12 B OG1 THR 39 B THR 39 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc13 B O TYR 40 B TYR 40 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc14 B O ASP 108 B ASP 108 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc15 B OD1 ASP 108 B ASP 108 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc16 B O GLN 195 B GLN 195 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc17 B O ILE 260 B ILE 260 1_555 L NA NA . D NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc18 B O GLY 470 B GLY 470 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc19 G NA NA . B NA 501 1_555 N O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc20 H NA NA . B NA 502 1_555 P O HOH . D HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc21 N O HOH . B HOH 628 1_555 L NA NA . D NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc22 N O HOH . B HOH 634 1_555 L NA NA . D NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc23 C OG1 THR 39 C THR 39 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc24 C O TYR 40 C TYR 40 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc25 C OD1 ASP 108 C ASP 108 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc26 C O ASP 108 C ASP 108 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc27 C O GLN 195 C GLN 195 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc28 C O LYS 467 C LYS 467 1_555 J NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc29 C O GLY 470 C GLY 470 1_555 J NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? metalc ? metalc30 D OG1 THR 39 D THR 39 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc31 D O TYR 40 D TYR 40 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc32 D O ASP 108 D ASP 108 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc33 D OD1 ASP 108 D ASP 108 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc34 D O GLN 195 D GLN 195 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc35 D O LYS 467 D LYS 467 1_555 L NA NA . D NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc36 D O GLY 470 D GLY 470 1_555 L NA NA . D NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc37 K NA NA . D NA 501 1_555 P O HOH . D HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QET _atom_sites.fract_transf_matrix[1][1] 0.012028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 501 1 NA NA . F 2 NA A 1 502 1 NA NA . G 2 NA B 1 501 1 NA NA . H 2 NA B 1 502 1 NA NA . I 2 NA C 1 501 1 NA NA . J 2 NA C 1 502 1 NA NA . K 2 NA D 1 501 1 NA NA . L 2 NA D 1 502 1 NA NA . M 3 HOH A 1 601 1 HOH HOH . M 3 HOH A 2 602 9 HOH HOH . M 3 HOH A 3 603 16 HOH HOH . M 3 HOH A 4 604 17 HOH HOH . M 3 HOH A 5 605 20 HOH HOH . M 3 HOH A 6 606 26 HOH HOH . M 3 HOH A 7 607 27 HOH HOH . M 3 HOH A 8 608 28 HOH HOH . M 3 HOH A 9 609 29 HOH HOH . M 3 HOH A 10 610 30 HOH HOH . M 3 HOH A 11 611 40 HOH HOH . M 3 HOH A 12 612 45 HOH HOH . M 3 HOH A 13 613 51 HOH HOH . M 3 HOH A 14 614 52 HOH HOH . M 3 HOH A 15 615 54 HOH HOH . M 3 HOH A 16 616 55 HOH HOH . M 3 HOH A 17 617 56 HOH HOH . M 3 HOH A 18 618 57 HOH HOH . M 3 HOH A 19 619 59 HOH HOH . M 3 HOH A 20 620 60 HOH HOH . M 3 HOH A 21 621 61 HOH HOH . M 3 HOH A 22 622 62 HOH HOH . M 3 HOH A 23 623 73 HOH HOH . M 3 HOH A 24 624 74 HOH HOH . M 3 HOH A 25 625 75 HOH HOH . M 3 HOH A 26 626 76 HOH HOH . M 3 HOH A 27 627 77 HOH HOH . M 3 HOH A 28 628 78 HOH HOH . M 3 HOH A 29 629 79 HOH HOH . M 3 HOH A 30 630 80 HOH HOH . M 3 HOH A 31 631 81 HOH HOH . M 3 HOH A 32 632 98 HOH HOH . M 3 HOH A 33 633 99 HOH HOH . M 3 HOH A 34 634 112 HOH HOH . M 3 HOH A 35 635 121 HOH HOH . M 3 HOH A 36 636 138 HOH HOH . M 3 HOH A 37 637 139 HOH HOH . M 3 HOH A 38 638 147 HOH HOH . M 3 HOH A 39 639 149 HOH HOH . M 3 HOH A 40 640 150 HOH HOH . M 3 HOH A 41 641 151 HOH HOH . M 3 HOH A 42 642 159 HOH HOH . M 3 HOH A 43 643 160 HOH HOH . M 3 HOH A 44 644 161 HOH HOH . M 3 HOH A 45 645 162 HOH HOH . M 3 HOH A 46 646 163 HOH HOH . M 3 HOH A 47 647 185 HOH HOH . M 3 HOH A 48 648 186 HOH HOH . M 3 HOH A 49 649 187 HOH HOH . M 3 HOH A 50 650 188 HOH HOH . N 3 HOH B 1 601 2 HOH HOH . N 3 HOH B 2 602 12 HOH HOH . N 3 HOH B 3 603 14 HOH HOH . N 3 HOH B 4 604 21 HOH HOH . N 3 HOH B 5 605 22 HOH HOH . N 3 HOH B 6 606 23 HOH HOH . N 3 HOH B 7 607 31 HOH HOH . N 3 HOH B 8 608 32 HOH HOH . N 3 HOH B 9 609 47 HOH HOH . N 3 HOH B 10 610 64 HOH HOH . N 3 HOH B 11 611 65 HOH HOH . N 3 HOH B 12 612 83 HOH HOH . N 3 HOH B 13 613 84 HOH HOH . N 3 HOH B 14 614 86 HOH HOH . N 3 HOH B 15 615 113 HOH HOH . N 3 HOH B 16 616 114 HOH HOH . N 3 HOH B 17 617 115 HOH HOH . N 3 HOH B 18 618 116 HOH HOH . N 3 HOH B 19 619 117 HOH HOH . N 3 HOH B 20 620 118 HOH HOH . N 3 HOH B 21 621 119 HOH HOH . N 3 HOH B 22 622 120 HOH HOH . N 3 HOH B 23 623 122 HOH HOH . N 3 HOH B 24 624 123 HOH HOH . N 3 HOH B 25 625 124 HOH HOH . N 3 HOH B 26 626 125 HOH HOH . N 3 HOH B 27 627 126 HOH HOH . N 3 HOH B 28 628 132 HOH HOH . N 3 HOH B 29 629 134 HOH HOH . N 3 HOH B 30 630 135 HOH HOH . N 3 HOH B 31 631 136 HOH HOH . N 3 HOH B 32 632 137 HOH HOH . N 3 HOH B 33 633 153 HOH HOH . N 3 HOH B 34 634 174 HOH HOH . N 3 HOH B 35 635 183 HOH HOH . N 3 HOH B 36 636 184 HOH HOH . O 3 HOH C 1 601 4 HOH HOH . O 3 HOH C 2 602 8 HOH HOH . O 3 HOH C 3 603 10 HOH HOH . O 3 HOH C 4 604 11 HOH HOH . O 3 HOH C 5 605 13 HOH HOH . O 3 HOH C 6 606 15 HOH HOH . O 3 HOH C 7 607 18 HOH HOH . O 3 HOH C 8 608 19 HOH HOH . O 3 HOH C 9 609 24 HOH HOH . O 3 HOH C 10 610 39 HOH HOH . O 3 HOH C 11 611 41 HOH HOH . O 3 HOH C 12 612 42 HOH HOH . O 3 HOH C 13 613 43 HOH HOH . O 3 HOH C 14 614 44 HOH HOH . O 3 HOH C 15 615 46 HOH HOH . O 3 HOH C 16 616 48 HOH HOH . O 3 HOH C 17 617 49 HOH HOH . O 3 HOH C 18 618 50 HOH HOH . O 3 HOH C 19 619 58 HOH HOH . O 3 HOH C 20 620 63 HOH HOH . O 3 HOH C 21 621 66 HOH HOH . O 3 HOH C 22 622 67 HOH HOH . O 3 HOH C 23 623 68 HOH HOH . O 3 HOH C 24 624 69 HOH HOH . O 3 HOH C 25 625 70 HOH HOH . O 3 HOH C 26 626 71 HOH HOH . O 3 HOH C 27 627 72 HOH HOH . O 3 HOH C 28 628 101 HOH HOH . O 3 HOH C 29 629 102 HOH HOH . O 3 HOH C 30 630 103 HOH HOH . O 3 HOH C 31 631 104 HOH HOH . O 3 HOH C 32 632 105 HOH HOH . O 3 HOH C 33 633 106 HOH HOH . O 3 HOH C 34 634 107 HOH HOH . O 3 HOH C 35 635 108 HOH HOH . O 3 HOH C 36 636 109 HOH HOH . O 3 HOH C 37 637 110 HOH HOH . O 3 HOH C 38 638 111 HOH HOH . O 3 HOH C 39 639 128 HOH HOH . O 3 HOH C 40 640 129 HOH HOH . O 3 HOH C 41 641 130 HOH HOH . O 3 HOH C 42 642 140 HOH HOH . O 3 HOH C 43 643 141 HOH HOH . O 3 HOH C 44 644 142 HOH HOH . O 3 HOH C 45 645 143 HOH HOH . O 3 HOH C 46 646 144 HOH HOH . O 3 HOH C 47 647 145 HOH HOH . O 3 HOH C 48 648 146 HOH HOH . O 3 HOH C 49 649 164 HOH HOH . O 3 HOH C 50 650 165 HOH HOH . O 3 HOH C 51 651 166 HOH HOH . O 3 HOH C 52 652 167 HOH HOH . O 3 HOH C 53 653 168 HOH HOH . O 3 HOH C 54 654 169 HOH HOH . O 3 HOH C 55 655 170 HOH HOH . P 3 HOH D 1 601 3 HOH HOH . P 3 HOH D 2 602 5 HOH HOH . P 3 HOH D 3 603 6 HOH HOH . P 3 HOH D 4 604 7 HOH HOH . P 3 HOH D 5 605 25 HOH HOH . P 3 HOH D 6 606 33 HOH HOH . P 3 HOH D 7 607 34 HOH HOH . P 3 HOH D 8 608 35 HOH HOH . P 3 HOH D 9 609 36 HOH HOH . P 3 HOH D 10 610 37 HOH HOH . P 3 HOH D 11 611 38 HOH HOH . P 3 HOH D 12 612 82 HOH HOH . P 3 HOH D 13 613 85 HOH HOH . P 3 HOH D 14 614 87 HOH HOH . P 3 HOH D 15 615 88 HOH HOH . P 3 HOH D 16 616 89 HOH HOH . P 3 HOH D 17 617 90 HOH HOH . P 3 HOH D 18 618 91 HOH HOH . P 3 HOH D 19 619 92 HOH HOH . P 3 HOH D 20 620 93 HOH HOH . P 3 HOH D 21 621 94 HOH HOH . P 3 HOH D 22 622 95 HOH HOH . P 3 HOH D 23 623 96 HOH HOH . P 3 HOH D 24 624 97 HOH HOH . P 3 HOH D 25 625 127 HOH HOH . P 3 HOH D 26 626 131 HOH HOH . P 3 HOH D 27 627 133 HOH HOH . P 3 HOH D 28 628 148 HOH HOH . P 3 HOH D 29 629 152 HOH HOH . P 3 HOH D 30 630 154 HOH HOH . P 3 HOH D 31 631 155 HOH HOH . P 3 HOH D 32 632 156 HOH HOH . P 3 HOH D 33 633 157 HOH HOH . P 3 HOH D 34 634 158 HOH HOH . P 3 HOH D 35 635 171 HOH HOH . P 3 HOH D 36 636 172 HOH HOH . P 3 HOH D 37 637 173 HOH HOH . P 3 HOH D 38 638 175 HOH HOH . P 3 HOH D 39 639 176 HOH HOH . P 3 HOH D 40 640 177 HOH HOH . P 3 HOH D 41 641 178 HOH HOH . P 3 HOH D 42 642 179 HOH HOH . P 3 HOH D 43 643 180 HOH HOH . P 3 HOH D 44 644 181 HOH HOH . P 3 HOH D 45 645 182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.578 _atom_site.Cartn_y -52.81 _atom_site.Cartn_z 49.237 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #