data_4QF2
#
_model_server_result.job_id            qWU5sjBMQ8j9DP3mkxW5Dg 
_model_server_result.datetime_utc      '2024-11-23 04:32:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1803}' 
#
_entry.id    4QF2 
#
_exptl.entry_id    4QF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QF2 
_cell.length_a            72.014 
_cell.length_b            72.014 
_cell.length_c            99.061 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,L,M,Q,S 1 1 
B,D,H,I,J,N,O,P,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 9 A CYS 1679 1_555 E ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 A SG CYS 12 A CYS 1682 1_555 E ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc3 A SG CYS 24 A CYS 1694 1_555 F ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc4 A SG CYS 27 A CYS 1697 1_555 F ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc5 A ND1 HIS 32 A HIS 1702 1_555 E ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 A SG CYS 35 A CYS 1705 1_555 E ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc7 A SG CYS 50 A CYS 1720 1_555 F ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc8 A SG CYS 53 A CYS 1723 1_555 F ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc9 B SG CYS 9 B CYS 1679 1_555 H ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc10 B SG CYS 12 B CYS 1682 1_555 H ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc11 B SG CYS 24 B CYS 1694 1_555 I ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc12 B SG CYS 27 B CYS 1697 1_555 I ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc13 B ND1 HIS 32 B HIS 1702 1_555 H ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc14 B SG CYS 35 B CYS 1705 1_555 H ZN ZN . B ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc15 B SG CYS 50 B CYS 1720 1_555 I ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc16 B SG CYS 53 B CYS 1723 1_555 I ZN ZN . B ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc17 C SG CYS 9 C CYS 1679 1_555 K ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc18 C SG CYS 12 C CYS 1682 1_555 K ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc19 C SG CYS 24 C CYS 1694 1_555 L ZN ZN . C ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc20 C SG CYS 27 C CYS 1697 1_555 L ZN ZN . C ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc21 C ND1 HIS 32 C HIS 1702 1_555 K ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc22 C SG CYS 35 C CYS 1705 1_555 K ZN ZN . C ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc23 C SG CYS 50 C CYS 1720 1_555 L ZN ZN . C ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc24 C SG CYS 53 C CYS 1723 1_555 L ZN ZN . C ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc25 D SG CYS 9 D CYS 1679 1_555 N ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc26 D SG CYS 12 D CYS 1682 1_555 N ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc27 D SG CYS 24 D CYS 1694 1_555 O ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc28 D SG CYS 27 D CYS 1697 1_555 O ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc29 D ND1 HIS 32 D HIS 1702 1_555 N ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc30 D SG CYS 35 D CYS 1705 1_555 N ZN ZN . D ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc31 D SG CYS 50 D CYS 1720 1_555 O ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc32 D SG CYS 53 D CYS 1723 1_555 O ZN ZN . D ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4QF2 
_atom_sites.fract_transf_matrix[1][1]    0.013886 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 1801 1 ZN ZN . 
F 2 ZN A 1 1802 2 ZN ZN . 
G 3 PO4 A 1 1803 1 PO4 PO4 . 
H 2 ZN B 1 1801 3 ZN ZN . 
I 2 ZN B 1 1802 4 ZN ZN . 
J 3 PO4 B 1 1803 2 PO4 PO4 . 
K 2 ZN C 1 1801 5 ZN ZN . 
L 2 ZN C 1 1802 6 ZN ZN . 
M 4 GOL C 1 1803 4 GOL GOL . 
N 2 ZN D 1 1801 7 ZN ZN . 
O 2 ZN D 1 1802 8 ZN ZN . 
P 3 PO4 D 1 1803 3 PO4 PO4 . 
Q 5 HOH A 1 1901 3 HOH HOH . 
Q 5 HOH A 2 1902 9 HOH HOH . 
Q 5 HOH A 3 1903 17 HOH HOH . 
Q 5 HOH A 4 1904 20 HOH HOH . 
Q 5 HOH A 5 1905 26 HOH HOH . 
Q 5 HOH A 6 1906 28 HOH HOH . 
Q 5 HOH A 7 1907 34 HOH HOH . 
Q 5 HOH A 8 1908 35 HOH HOH . 
Q 5 HOH A 9 1909 45 HOH HOH . 
Q 5 HOH A 10 1910 56 HOH HOH . 
Q 5 HOH A 11 1911 67 HOH HOH . 
Q 5 HOH A 12 1912 70 HOH HOH . 
Q 5 HOH A 13 1913 73 HOH HOH . 
Q 5 HOH A 14 1914 77 HOH HOH . 
Q 5 HOH A 15 1915 87 HOH HOH . 
Q 5 HOH A 16 1916 90 HOH HOH . 
Q 5 HOH A 17 1917 93 HOH HOH . 
Q 5 HOH A 18 1918 101 HOH HOH . 
Q 5 HOH A 19 1919 103 HOH HOH . 
Q 5 HOH A 20 1920 104 HOH HOH . 
Q 5 HOH A 21 1921 105 HOH HOH . 
Q 5 HOH A 22 1922 106 HOH HOH . 
Q 5 HOH A 23 1923 109 HOH HOH . 
R 5 HOH B 1 1901 7 HOH HOH . 
R 5 HOH B 2 1902 11 HOH HOH . 
R 5 HOH B 3 1903 13 HOH HOH . 
R 5 HOH B 4 1904 16 HOH HOH . 
R 5 HOH B 5 1905 19 HOH HOH . 
R 5 HOH B 6 1906 24 HOH HOH . 
R 5 HOH B 7 1907 29 HOH HOH . 
R 5 HOH B 8 1908 37 HOH HOH . 
R 5 HOH B 9 1909 46 HOH HOH . 
R 5 HOH B 10 1910 47 HOH HOH . 
R 5 HOH B 11 1911 48 HOH HOH . 
R 5 HOH B 12 1912 49 HOH HOH . 
R 5 HOH B 13 1913 55 HOH HOH . 
R 5 HOH B 14 1914 57 HOH HOH . 
R 5 HOH B 15 1915 63 HOH HOH . 
R 5 HOH B 16 1916 66 HOH HOH . 
R 5 HOH B 17 1917 75 HOH HOH . 
R 5 HOH B 18 1918 76 HOH HOH . 
R 5 HOH B 19 1919 81 HOH HOH . 
R 5 HOH B 20 1920 82 HOH HOH . 
R 5 HOH B 21 1921 98 HOH HOH . 
R 5 HOH B 22 1922 99 HOH HOH . 
R 5 HOH B 23 1923 114 HOH HOH . 
R 5 HOH B 24 1924 115 HOH HOH . 
S 5 HOH C 1 1901 1 HOH HOH . 
S 5 HOH C 2 1902 4 HOH HOH . 
S 5 HOH C 3 1903 10 HOH HOH . 
S 5 HOH C 4 1904 15 HOH HOH . 
S 5 HOH C 5 1905 22 HOH HOH . 
S 5 HOH C 6 1906 23 HOH HOH . 
S 5 HOH C 7 1907 25 HOH HOH . 
S 5 HOH C 8 1908 30 HOH HOH . 
S 5 HOH C 9 1909 33 HOH HOH . 
S 5 HOH C 10 1910 36 HOH HOH . 
S 5 HOH C 11 1911 38 HOH HOH . 
S 5 HOH C 12 1912 39 HOH HOH . 
S 5 HOH C 13 1913 41 HOH HOH . 
S 5 HOH C 14 1914 43 HOH HOH . 
S 5 HOH C 15 1915 44 HOH HOH . 
S 5 HOH C 16 1916 50 HOH HOH . 
S 5 HOH C 17 1917 52 HOH HOH . 
S 5 HOH C 18 1918 58 HOH HOH . 
S 5 HOH C 19 1919 59 HOH HOH . 
S 5 HOH C 20 1920 60 HOH HOH . 
S 5 HOH C 21 1921 61 HOH HOH . 
S 5 HOH C 22 1922 62 HOH HOH . 
S 5 HOH C 23 1923 65 HOH HOH . 
S 5 HOH C 24 1924 68 HOH HOH . 
S 5 HOH C 25 1925 69 HOH HOH . 
S 5 HOH C 26 1926 74 HOH HOH . 
S 5 HOH C 27 1927 88 HOH HOH . 
S 5 HOH C 28 1928 89 HOH HOH . 
S 5 HOH C 29 1929 91 HOH HOH . 
S 5 HOH C 30 1930 92 HOH HOH . 
S 5 HOH C 31 1931 94 HOH HOH . 
S 5 HOH C 32 1932 95 HOH HOH . 
S 5 HOH C 33 1933 96 HOH HOH . 
S 5 HOH C 34 1934 100 HOH HOH . 
S 5 HOH C 35 1935 102 HOH HOH . 
S 5 HOH C 36 1936 107 HOH HOH . 
S 5 HOH C 37 1937 108 HOH HOH . 
S 5 HOH C 38 1938 110 HOH HOH . 
S 5 HOH C 39 1939 113 HOH HOH . 
S 5 HOH C 40 1940 116 HOH HOH . 
S 5 HOH C 41 1941 117 HOH HOH . 
T 5 HOH D 1 1901 2 HOH HOH . 
T 5 HOH D 2 1902 5 HOH HOH . 
T 5 HOH D 3 1903 6 HOH HOH . 
T 5 HOH D 4 1904 8 HOH HOH . 
T 5 HOH D 5 1905 12 HOH HOH . 
T 5 HOH D 6 1906 14 HOH HOH . 
T 5 HOH D 7 1907 18 HOH HOH . 
T 5 HOH D 8 1908 21 HOH HOH . 
T 5 HOH D 9 1909 27 HOH HOH . 
T 5 HOH D 10 1910 31 HOH HOH . 
T 5 HOH D 11 1911 32 HOH HOH . 
T 5 HOH D 12 1912 40 HOH HOH . 
T 5 HOH D 13 1913 42 HOH HOH . 
T 5 HOH D 14 1914 51 HOH HOH . 
T 5 HOH D 15 1915 53 HOH HOH . 
T 5 HOH D 16 1916 54 HOH HOH . 
T 5 HOH D 17 1917 64 HOH HOH . 
T 5 HOH D 18 1918 71 HOH HOH . 
T 5 HOH D 19 1919 72 HOH HOH . 
T 5 HOH D 20 1920 78 HOH HOH . 
T 5 HOH D 21 1921 79 HOH HOH . 
T 5 HOH D 22 1922 80 HOH HOH . 
T 5 HOH D 23 1923 83 HOH HOH . 
T 5 HOH D 24 1924 84 HOH HOH . 
T 5 HOH D 25 1925 85 HOH HOH . 
T 5 HOH D 26 1926 86 HOH HOH . 
T 5 HOH D 27 1927 97 HOH HOH . 
T 5 HOH D 28 1928 111 HOH HOH . 
T 5 HOH D 29 1929 112 HOH HOH . 
T 5 HOH D 30 1930 118 HOH HOH . 
T 5 HOH D 31 1931 119 HOH HOH . 
T 5 HOH D 32 1932 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 4 -1.702 30.914 29.41 1 63.92 ? C1 GOL 1803 C 1 
HETATM 2 O O1 GOL . . . M 4 -2.655 30.358 30.334 1 52.71 ? O1 GOL 1803 C 1 
HETATM 3 C C2 GOL . . . M 4 -1.835 30.373 27.969 1 62.65 ? C2 GOL 1803 C 1 
HETATM 4 O O2 GOL . . . M 4 -1.554 28.976 27.903 1 68.88 ? O2 GOL 1803 C 1 
HETATM 5 C C3 GOL . . . M 4 -0.841 31.018 27.01 1 41.77 ? C3 GOL 1803 C 1 
HETATM 6 O O3 GOL . . . M 4 -1.232 32.342 26.603 1 59.11 ? O3 GOL 1803 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#