data_4QFC # _model_server_result.job_id iMvGP-f2Eo6hx_vyIXQ0cg _model_server_result.datetime_utc '2024-11-24 18:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4QFC # _exptl.entry_id 4QFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QFC _cell.length_a 44.39 _cell.length_b 60.93 _cell.length_c 258.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O LEU 122 B LEU 122 1_555 E K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 B O PHE 125 B PHE 125 1_555 E K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc3 B O TYR 128 B TYR 128 1_555 E K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 130 n n PA O2A FAD sing 131 n n PA O5B FAD sing 132 n n PA O3P FAD sing 133 n n O2A HOA2 FAD sing 134 n n O5B C5B FAD sing 135 n n C5B C4B FAD sing 136 n n C5B H51A FAD sing 137 n n C5B H52A FAD sing 138 n n C4B O4B FAD sing 139 n n C4B C3B FAD sing 140 n n C4B H4B FAD sing 141 n n O4B C1B FAD sing 142 n n C3B O3B FAD sing 143 n n C3B C2B FAD sing 144 n n C3B H3B FAD sing 145 n n O3B HO3A FAD sing 146 n n C2B O2B FAD sing 147 n n C2B C1B FAD sing 148 n n C2B H2B FAD sing 149 n n O2B HO2A FAD sing 150 n n C1B N9A FAD sing 151 n n C1B H1B FAD sing 152 n n N9A C8A FAD sing 153 n y N9A C4A FAD sing 154 n y C8A N7A FAD doub 155 n y C8A H8A FAD sing 156 n n N7A C5A FAD sing 157 n y C5A C6A FAD sing 158 n y C5A C4A FAD doub 159 n y C6A N6A FAD sing 160 n n C6A N1A FAD doub 161 n y N6A H61A FAD sing 162 n n N6A H62A FAD sing 163 n n N1A C2A FAD sing 164 n y C2A N3A FAD doub 165 n y C2A H2A FAD sing 166 n n N3A C4A FAD sing 167 n y N1 C2 FAD sing 168 n n N1 C10 FAD doub 169 n n C2 O2 FAD doub 170 n n C2 N3 FAD sing 171 n n N3 C4 FAD sing 172 n n N3 HN3 FAD sing 173 n n C4 O4 FAD doub 174 n n C4 C4X FAD sing 175 n n C4X N5 FAD doub 176 n n C4X C10 FAD sing 177 n n N5 C5X FAD sing 178 n n C5X C6 FAD doub 179 n y C5X C9A FAD sing 180 n y C6 C7 FAD sing 181 n y C6 H6 FAD sing 182 n n C7 C7M FAD sing 183 n n C7 C8 FAD doub 184 n y C7M HM71 FAD sing 185 n n C7M HM72 FAD sing 186 n n C7M HM73 FAD sing 187 n n C8 C8M FAD sing 188 n n C8 C9 FAD sing 189 n y C8M HM81 FAD sing 190 n n C8M HM82 FAD sing 191 n n C8M HM83 FAD sing 192 n n C9 C9A FAD doub 193 n y C9 H9 FAD sing 194 n n C9A N10 FAD sing 195 n n N10 C10 FAD sing 196 n n N10 C1' FAD sing 197 n n C1' C2' FAD sing 198 n n C1' "H1'1" FAD sing 199 n n C1' "H1'2" FAD sing 200 n n C2' O2' FAD sing 201 n n C2' C3' FAD sing 202 n n C2' H2' FAD sing 203 n n O2' HO2' FAD sing 204 n n C3' O3' FAD sing 205 n n C3' C4' FAD sing 206 n n C3' H3' FAD sing 207 n n O3' HO3' FAD sing 208 n n C4' O4' FAD sing 209 n n C4' C5' FAD sing 210 n n C4' H4' FAD sing 211 n n O4' HO4' FAD sing 212 n n C5' O5' FAD sing 213 n n C5' "H5'1" FAD sing 214 n n C5' "H5'2" FAD sing 215 n n O5' P FAD sing 216 n n P O1P FAD doub 217 n n P O2P FAD sing 218 n n P O3P FAD sing 219 n n O2P HOP2 FAD sing 220 n n # _atom_sites.entry_id 4QFC _atom_sites.fract_transf_matrix[1][1] 0.022528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 401 FAD FAD . D 3 31T A 1 402 402 31T 049 . E 4 K B 1 401 1 K K . F 2 FAD B 1 402 401 FAD FAD . G 3 31T B 1 403 402 31T 049 . H 5 HOH A 1 501 1 HOH HOH . H 5 HOH A 2 502 2 HOH HOH . H 5 HOH A 3 503 3 HOH HOH . H 5 HOH A 4 504 4 HOH HOH . H 5 HOH A 5 505 10 HOH HOH . H 5 HOH A 6 506 11 HOH HOH . H 5 HOH A 7 507 12 HOH HOH . H 5 HOH A 8 508 14 HOH HOH . H 5 HOH A 9 509 15 HOH HOH . H 5 HOH A 10 510 16 HOH HOH . H 5 HOH A 11 511 17 HOH HOH . H 5 HOH A 12 512 23 HOH HOH . H 5 HOH A 13 513 24 HOH HOH . H 5 HOH A 14 514 25 HOH HOH . H 5 HOH A 15 515 26 HOH HOH . H 5 HOH A 16 516 27 HOH HOH . H 5 HOH A 17 517 28 HOH HOH . H 5 HOH A 18 518 29 HOH HOH . H 5 HOH A 19 519 30 HOH HOH . H 5 HOH A 20 520 31 HOH HOH . H 5 HOH A 21 521 32 HOH HOH . H 5 HOH A 22 522 33 HOH HOH . H 5 HOH A 23 523 34 HOH HOH . H 5 HOH A 24 524 35 HOH HOH . H 5 HOH A 25 525 36 HOH HOH . H 5 HOH A 26 526 37 HOH HOH . H 5 HOH A 27 527 40 HOH HOH . H 5 HOH A 28 528 41 HOH HOH . H 5 HOH A 29 529 42 HOH HOH . H 5 HOH A 30 530 43 HOH HOH . H 5 HOH A 31 531 44 HOH HOH . H 5 HOH A 32 532 54 HOH HOH . H 5 HOH A 33 533 55 HOH HOH . H 5 HOH A 34 534 58 HOH HOH . H 5 HOH A 35 535 60 HOH HOH . H 5 HOH A 36 536 61 HOH HOH . H 5 HOH A 37 537 63 HOH HOH . H 5 HOH A 38 538 66 HOH HOH . H 5 HOH A 39 539 67 HOH HOH . H 5 HOH A 40 540 68 HOH HOH . H 5 HOH A 41 541 69 HOH HOH . H 5 HOH A 42 542 70 HOH HOH . H 5 HOH A 43 543 74 HOH HOH . H 5 HOH A 44 544 75 HOH HOH . H 5 HOH A 45 545 77 HOH HOH . H 5 HOH A 46 546 79 HOH HOH . H 5 HOH A 47 547 80 HOH HOH . H 5 HOH A 48 548 81 HOH HOH . H 5 HOH A 49 549 83 HOH HOH . H 5 HOH A 50 550 84 HOH HOH . H 5 HOH A 51 551 85 HOH HOH . H 5 HOH A 52 552 86 HOH HOH . H 5 HOH A 53 553 89 HOH HOH . H 5 HOH A 54 554 90 HOH HOH . H 5 HOH A 55 555 91 HOH HOH . H 5 HOH A 56 556 92 HOH HOH . H 5 HOH A 57 557 95 HOH HOH . H 5 HOH A 58 558 96 HOH HOH . H 5 HOH A 59 559 97 HOH HOH . H 5 HOH A 60 560 98 HOH HOH . I 5 HOH B 1 501 5 HOH HOH . I 5 HOH B 2 502 6 HOH HOH . I 5 HOH B 3 503 7 HOH HOH . I 5 HOH B 4 504 8 HOH HOH . I 5 HOH B 5 505 9 HOH HOH . I 5 HOH B 6 506 13 HOH HOH . I 5 HOH B 7 507 18 HOH HOH . I 5 HOH B 8 508 19 HOH HOH . I 5 HOH B 9 509 20 HOH HOH . I 5 HOH B 10 510 21 HOH HOH . I 5 HOH B 11 511 22 HOH HOH . I 5 HOH B 12 512 38 HOH HOH . I 5 HOH B 13 513 39 HOH HOH . I 5 HOH B 14 514 45 HOH HOH . I 5 HOH B 15 515 46 HOH HOH . I 5 HOH B 16 516 47 HOH HOH . I 5 HOH B 17 517 48 HOH HOH . I 5 HOH B 18 518 49 HOH HOH . I 5 HOH B 19 519 50 HOH HOH . I 5 HOH B 20 520 51 HOH HOH . I 5 HOH B 21 521 52 HOH HOH . I 5 HOH B 22 522 53 HOH HOH . I 5 HOH B 23 523 56 HOH HOH . I 5 HOH B 24 524 57 HOH HOH . I 5 HOH B 25 525 59 HOH HOH . I 5 HOH B 26 526 62 HOH HOH . I 5 HOH B 27 527 64 HOH HOH . I 5 HOH B 28 528 65 HOH HOH . I 5 HOH B 29 529 71 HOH HOH . I 5 HOH B 30 530 72 HOH HOH . I 5 HOH B 31 531 73 HOH HOH . I 5 HOH B 32 532 76 HOH HOH . I 5 HOH B 33 533 78 HOH HOH . I 5 HOH B 34 534 82 HOH HOH . I 5 HOH B 35 535 87 HOH HOH . I 5 HOH B 36 536 88 HOH HOH . I 5 HOH B 37 537 93 HOH HOH . I 5 HOH B 38 538 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 -0.713 12.371 -62.164 1 16.73 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . C 2 -2.18 12.207 -62.393 1 16.41 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . C 2 -0.194 13.159 -60.987 1 16.5 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . C 2 -0.002 12.931 -63.456 1 15.96 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . C 2 -0.373 12.458 -64.714 1 16.29 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . C 2 0.254 13.379 -65.709 1 16.26 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . C 2 0.097 12.832 -67.027 1 17.2 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . C 2 -0.455 14.723 -65.744 1 16.19 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . C 2 0.521 15.735 -65.933 1 15.27 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . C 2 -1.302 14.665 -67 1 17.09 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . C 2 -1.573 15.949 -67.526 1 16.59 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . C 2 -0.362 13.884 -67.907 1 17.28 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . C 2 -0.924 13.275 -69.084 1 17.39 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . C 2 -1.72 12.206 -69.092 1 18.23 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . C 2 -2.062 11.863 -70.369 1 18.61 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . C 2 -1.442 12.733 -71.174 1 18.06 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . C 2 -1.361 12.966 -72.607 1 17.85 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . C 2 -1.995 12.153 -73.468 1 17.72 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . C 2 -0.625 13.981 -73.05 1 17.63 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . C 2 0.023 14.78 -72.219 1 17.92 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . C 2 -0.029 14.654 -70.899 1 18.71 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . C 2 -0.717 13.661 -70.317 1 18.15 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . C 2 -0.802 8.651 -52.882 1 19.76 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . C 2 0.04 8.608 -51.833 1 20.73 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . C 2 1.14 8.045 -52.012 1 21.78 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . C 2 -0.267 9.141 -50.637 1 20.7 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . C 2 -1.439 9.745 -50.396 1 19.47 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . C 2 -1.71 10.214 -49.283 1 20.48 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . C 2 -2.41 9.805 -51.461 1 18.96 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . C 2 -3.618 10.359 -51.306 1 18.97 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . C 2 -4.502 10.378 -52.325 1 18.37 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . C 2 -5.746 10.957 -52.172 1 19.21 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . C 2 -6.677 11.017 -53.219 1 19.75 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . C 2 -8.029 11.659 -52.987 1 20.06 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . C 2 -6.29 10.496 -54.53 1 19.37 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . C 2 -7.166 10.51 -55.74 1 20.02 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . C 2 -5.035 9.937 -54.677 1 20.21 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . C 2 -4.115 9.854 -53.639 1 18.9 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . C 2 -2.839 9.264 -53.831 1 19.03 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . C 2 -1.994 9.207 -52.742 1 19.06 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . C 2 -2.361 8.637 -55.084 1 18.05 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . C 2 -1.506 9.589 -55.876 1 16.95 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . C 2 -2.353 10.719 -56.041 1 17.24 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . C 2 -1.174 8.971 -57.23 1 16.61 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . C 2 -0.73 7.62 -57.095 1 16.56 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . C 2 -0.097 9.736 -57.952 1 16.13 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . C 2 -0.478 11.093 -57.932 1 15.94 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . C 2 0.058 9.276 -59.394 1 16.12 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . C 2 0.952 10.171 -60.013 1 16.32 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . C 2 1.19 10.231 -61.588 1 17.71 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . C 2 2.29 11.243 -61.853 1 16.93 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . C 2 1.235 8.849 -62.171 1 17.24 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . C 2 -0.237 10.815 -62.085 1 17.42 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #