data_4QFD
#
_model_server_result.job_id            nefTaydJ7aIWZyAcnkkytA 
_model_server_result.datetime_utc      '2024-11-28 14:12:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4QFD 
#
_exptl.entry_id    4QFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4QFD 
_cell.length_a            86.49 
_cell.length_b            86.49 
_cell.length_c            187.97 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1,2 
B,F,G,H,J 2 1,2 
A,B,C,D,E,F,G,H,I,J 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 62.656667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 122 A LEU 122 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc2 A O PHE 125 A PHE 125 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc3 A O TYR 128 A TYR 128 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc4 B O LEU 122 B LEU 122 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc5 B O PHE 125 B PHE 125 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc6 B O TYR 128 B TYR 128 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 122 n n 
PA O2A FAD sing 123 n n 
PA O5B FAD sing 124 n n 
PA O3P FAD sing 125 n n 
O2A HOA2 FAD sing 126 n n 
O5B C5B FAD sing 127 n n 
C5B C4B FAD sing 128 n n 
C5B H51A FAD sing 129 n n 
C5B H52A FAD sing 130 n n 
C4B O4B FAD sing 131 n n 
C4B C3B FAD sing 132 n n 
C4B H4B FAD sing 133 n n 
O4B C1B FAD sing 134 n n 
C3B O3B FAD sing 135 n n 
C3B C2B FAD sing 136 n n 
C3B H3B FAD sing 137 n n 
O3B HO3A FAD sing 138 n n 
C2B O2B FAD sing 139 n n 
C2B C1B FAD sing 140 n n 
C2B H2B FAD sing 141 n n 
O2B HO2A FAD sing 142 n n 
C1B N9A FAD sing 143 n n 
C1B H1B FAD sing 144 n n 
N9A C8A FAD sing 145 n y 
N9A C4A FAD sing 146 n y 
C8A N7A FAD doub 147 n y 
C8A H8A FAD sing 148 n n 
N7A C5A FAD sing 149 n y 
C5A C6A FAD sing 150 n y 
C5A C4A FAD doub 151 n y 
C6A N6A FAD sing 152 n n 
C6A N1A FAD doub 153 n y 
N6A H61A FAD sing 154 n n 
N6A H62A FAD sing 155 n n 
N1A C2A FAD sing 156 n y 
C2A N3A FAD doub 157 n y 
C2A H2A FAD sing 158 n n 
N3A C4A FAD sing 159 n y 
N1 C2 FAD sing 160 n n 
N1 C10 FAD doub 161 n n 
C2 O2 FAD doub 162 n n 
C2 N3 FAD sing 163 n n 
N3 C4 FAD sing 164 n n 
N3 HN3 FAD sing 165 n n 
C4 O4 FAD doub 166 n n 
C4 C4X FAD sing 167 n n 
C4X N5 FAD doub 168 n n 
C4X C10 FAD sing 169 n n 
N5 C5X FAD sing 170 n n 
C5X C6 FAD doub 171 n y 
C5X C9A FAD sing 172 n y 
C6 C7 FAD sing 173 n y 
C6 H6 FAD sing 174 n n 
C7 C7M FAD sing 175 n n 
C7 C8 FAD doub 176 n y 
C7M HM71 FAD sing 177 n n 
C7M HM72 FAD sing 178 n n 
C7M HM73 FAD sing 179 n n 
C8 C8M FAD sing 180 n n 
C8 C9 FAD sing 181 n y 
C8M HM81 FAD sing 182 n n 
C8M HM82 FAD sing 183 n n 
C8M HM83 FAD sing 184 n n 
C9 C9A FAD doub 185 n y 
C9 H9 FAD sing 186 n n 
C9A N10 FAD sing 187 n n 
N10 C10 FAD sing 188 n n 
N10 C1' FAD sing 189 n n 
C1' C2' FAD sing 190 n n 
C1' "H1'1" FAD sing 191 n n 
C1' "H1'2" FAD sing 192 n n 
C2' O2' FAD sing 193 n n 
C2' C3' FAD sing 194 n n 
C2' H2' FAD sing 195 n n 
O2' HO2' FAD sing 196 n n 
C3' O3' FAD sing 197 n n 
C3' C4' FAD sing 198 n n 
C3' H3' FAD sing 199 n n 
O3' HO3' FAD sing 200 n n 
C4' O4' FAD sing 201 n n 
C4' C5' FAD sing 202 n n 
C4' H4' FAD sing 203 n n 
O4' HO4' FAD sing 204 n n 
C5' O5' FAD sing 205 n n 
C5' "H5'1" FAD sing 206 n n 
C5' "H5'2" FAD sing 207 n n 
O5' P FAD sing 208 n n 
P O1P FAD doub 209 n n 
P O2P FAD sing 210 n n 
P O3P FAD sing 211 n n 
O2P HOP2 FAD sing 212 n n 
#
_atom_sites.entry_id                     4QFD 
_atom_sites.fract_transf_matrix[1][1]    0.011562 
_atom_sites.fract_transf_matrix[1][2]    0.006675 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 401 403 NA NA . 
D 3 FAD A 1 402 401 FAD FAD . 
E 4 31R A 1 403 402 31R 036 . 
F 2 NA B 1 401 403 NA NA . 
G 3 FAD B 1 402 401 FAD FAD . 
H 4 31R B 1 403 402 31R 036 . 
I 5 HOH A 1 501 1 HOH HOH . 
I 5 HOH A 2 502 3 HOH HOH . 
I 5 HOH A 3 503 4 HOH HOH . 
I 5 HOH A 4 504 5 HOH HOH . 
I 5 HOH A 5 505 6 HOH HOH . 
I 5 HOH A 6 506 7 HOH HOH . 
I 5 HOH A 7 507 8 HOH HOH . 
I 5 HOH A 8 508 9 HOH HOH . 
I 5 HOH A 9 509 10 HOH HOH . 
I 5 HOH A 10 510 11 HOH HOH . 
I 5 HOH A 11 511 12 HOH HOH . 
J 5 HOH B 1 501 2 HOH HOH . 
J 5 HOH B 2 502 13 HOH HOH . 
J 5 HOH B 3 503 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 3 5.721 -19.257 12.92 1 60.16 ? PA FAD 402 A 1 
HETATM 2 O O1A FAD . . . D 3 6.142 -18.598 11.609 1 60.31 ? O1A FAD 402 A 1 
HETATM 3 O O2A FAD . . . D 3 5.846 -18.586 14.265 1 59.95 ? O2A FAD 402 A 1 
HETATM 4 O O5B FAD . . . D 3 6.477 -20.657 13.102 1 61.21 ? O5B FAD 402 A 1 
HETATM 5 C C5B FAD . . . D 3 6.666 -21.466 11.959 1 63.11 ? C5B FAD 402 A 1 
HETATM 6 C C4B FAD . . . D 3 7.674 -22.531 12.292 1 64.45 ? C4B FAD 402 A 1 
HETATM 7 O O4B FAD . . . D 3 7.655 -23.481 11.236 1 66.41 ? O4B FAD 402 A 1 
HETATM 8 C C3B FAD . . . D 3 9.088 -22.003 12.362 1 64.89 ? C3B FAD 402 A 1 
HETATM 9 O O3B FAD . . . D 3 9.782 -22.663 13.418 1 64.86 ? O3B FAD 402 A 1 
HETATM 10 C C2B FAD . . . D 3 9.694 -22.397 11.037 1 66.31 ? C2B FAD 402 A 1 
HETATM 11 O O2B FAD . . . D 3 11.109 -22.581 11.136 1 67.62 ? O2B FAD 402 A 1 
HETATM 12 C C1B FAD . . . D 3 8.99 -23.71 10.795 1 67.42 ? C1B FAD 402 A 1 
HETATM 13 N N9A FAD . . . D 3 8.963 -24.18 9.398 1 69.14 ? N9A FAD 402 A 1 
HETATM 14 C C8A FAD . . . D 3 8.164 -23.689 8.44 1 69.79 ? C8A FAD 402 A 1 
HETATM 15 N N7A FAD . . . D 3 8.351 -24.356 7.27 1 70.91 ? N7A FAD 402 A 1 
HETATM 16 C C5A FAD . . . D 3 9.284 -25.29 7.494 1 70.88 ? C5A FAD 402 A 1 
HETATM 17 C C6A FAD . . . D 3 9.935 -26.318 6.674 1 71.79 ? C6A FAD 402 A 1 
HETATM 18 N N6A FAD . . . D 3 9.576 -26.415 5.375 1 72.65 ? N6A FAD 402 A 1 
HETATM 19 N N1A FAD . . . D 3 10.862 -27.11 7.263 1 71.79 ? N1A FAD 402 A 1 
HETATM 20 C C2A FAD . . . D 3 11.192 -26.958 8.563 1 71.49 ? C2A FAD 402 A 1 
HETATM 21 N N3A FAD . . . D 3 10.628 -26.034 9.368 1 70.34 ? N3A FAD 402 A 1 
HETATM 22 C C4A FAD . . . D 3 9.683 -25.188 8.9 1 70.06 ? C4A FAD 402 A 1 
HETATM 23 N N1 FAD . . . D 3 -1.086 -12.604 16.55 1 55.06 ? N1 FAD 402 A 1 
HETATM 24 C C2 FAD . . . D 3 -1.725 -12.299 17.692 1 55.12 ? C2 FAD 402 A 1 
HETATM 25 O O2 FAD . . . D 3 -2.475 -13.176 18.178 1 55.79 ? O2 FAD 402 A 1 
HETATM 26 N N3 FAD . . . D 3 -1.565 -11.106 18.303 1 54.71 ? N3 FAD 402 A 1 
HETATM 27 C C4 FAD . . . D 3 -0.76 -10.144 17.81 1 54.44 ? C4 FAD 402 A 1 
HETATM 28 O O4 FAD . . . D 3 -0.634 -9.051 18.417 1 53.97 ? O4 FAD 402 A 1 
HETATM 29 C C4X FAD . . . D 3 -0.035 -10.418 16.54 1 54.52 ? C4X FAD 402 A 1 
HETATM 30 N N5 FAD . . . D 3 0.799 -9.537 15.932 1 54.82 ? N5 FAD 402 A 1 
HETATM 31 C C5X FAD . . . D 3 1.44 -9.855 14.766 1 55.14 ? C5X FAD 402 A 1 
HETATM 32 C C6 FAD . . . D 3 2.297 -8.941 14.157 1 55.23 ? C6 FAD 402 A 1 
HETATM 33 C C7 FAD . . . D 3 2.957 -9.251 12.976 1 55.95 ? C7 FAD 402 A 1 
HETATM 34 C C7M FAD . . . D 3 3.872 -8.262 12.298 1 56.7 ? C7M FAD 402 A 1 
HETATM 35 C C8 FAD . . . D 3 2.759 -10.575 12.354 1 56.52 ? C8 FAD 402 A 1 
HETATM 36 C C8M FAD . . . D 3 3.482 -10.895 11.071 1 57.56 ? C8M FAD 402 A 1 
HETATM 37 C C9 FAD . . . D 3 1.913 -11.51 12.943 1 56.08 ? C9 FAD 402 A 1 
HETATM 38 C C9A FAD . . . D 3 1.24 -11.198 14.131 1 55.51 ? C9A FAD 402 A 1 
HETATM 39 N N10 FAD . . . D 3 0.378 -12.114 14.771 1 55.12 ? N10 FAD 402 A 1 
HETATM 40 C C10 FAD . . . D 3 -0.256 -11.746 15.953 1 54.64 ? C10 FAD 402 A 1 
HETATM 41 C C1' FAD . . . D 3 0.098 -13.438 14.226 1 55.76 ? C1' FAD 402 A 1 
HETATM 42 C C2' FAD . . . D 3 1.112 -14.43 14.751 1 55.38 ? C2' FAD 402 A 1 
HETATM 43 O O2' FAD . . . D 3 2.402 -13.804 14.829 1 55.11 ? O2' FAD 402 A 1 
HETATM 44 C C3' FAD . . . D 3 1.159 -15.643 13.835 1 55.86 ? C3' FAD 402 A 1 
HETATM 45 O O3' FAD . . . D 3 -0.174 -16.019 13.449 1 56.38 ? O3' FAD 402 A 1 
HETATM 46 C C4' FAD . . . D 3 1.856 -16.783 14.55 1 55.84 ? C4' FAD 402 A 1 
HETATM 47 O O4' FAD . . . D 3 3.147 -16.378 15.016 1 55.11 ? O4' FAD 402 A 1 
HETATM 48 C C5' FAD . . . D 3 2.003 -17.973 13.623 1 56.88 ? C5' FAD 402 A 1 
HETATM 49 O O5' FAD . . . D 3 2.478 -19.083 14.382 1 57.62 ? O5' FAD 402 A 1 
HETATM 50 P P FAD . . . D 3 3.081 -20.318 13.573 1 58.8 ? P FAD 402 A 1 
HETATM 51 O O1P FAD . . . D 3 3.729 -21.294 14.525 1 58.9 ? O1P FAD 402 A 1 
HETATM 52 O O2P FAD . . . D 3 2.015 -20.741 12.594 1 59.31 ? O2P FAD 402 A 1 
HETATM 53 O O3P FAD . . . D 3 4.169 -19.58 12.64 1 59.52 ? O3P FAD 402 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           53 
#