data_4QFD # _model_server_result.job_id ZA_vBG1fIGehDcrpDLiWZA _model_server_result.datetime_utc '2024-11-24 20:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 4QFD # _exptl.entry_id 4QFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.301 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(7-hydroxy-2-oxo-4-phenyl-2H-chromen-6-yl)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QFD _cell.length_a 86.49 _cell.length_b 86.49 _cell.length_c 187.97 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,2 A,B,C,D,E,F,G,H,I,J 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 62.656667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 122 A LEU 122 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc2 A O PHE 125 A PHE 125 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc3 A O TYR 128 A TYR 128 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc4 B O LEU 122 B LEU 122 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc5 B O PHE 125 B PHE 125 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc6 B O TYR 128 B TYR 128 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C18 H14 O5' _chem_comp.formula_weight 310.301 _chem_comp.id 31R _chem_comp.mon_nstd_flag . _chem_comp.name '3-(7-hydroxy-2-oxo-4-phenyl-2H-chromen-6-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 31R doub 1 n y C15 C14 31R sing 2 n y C16 C17 31R sing 3 n y C14 C13 31R doub 4 n y C17 C18 31R doub 5 n y C13 C18 31R sing 6 n y C13 C4 31R sing 7 n n O22 C21 31R doub 8 n n C5 C4 31R doub 9 n n C5 C6 31R sing 10 n n O23 C21 31R sing 11 n n C4 C3 31R sing 12 n n O11 C6 31R doub 13 n n C21 C20 31R sing 14 n n C6 O1 31R sing 15 n n C3 C10 31R doub 16 n y C3 C2 31R sing 17 n y C10 C9 31R sing 18 n y O1 C2 31R sing 19 n n C2 C7 31R doub 20 n y C20 C19 31R sing 21 n n C9 C19 31R sing 22 n n C9 C8 31R doub 23 n y C7 C8 31R sing 24 n y C8 O12 31R sing 25 n n C7 H1 31R sing 26 n n O12 H2 31R sing 27 n n C5 H3 31R sing 28 n n C14 H4 31R sing 29 n n C15 H5 31R sing 30 n n C16 H6 31R sing 31 n n C17 H7 31R sing 32 n n C18 H8 31R sing 33 n n C10 H9 31R sing 34 n n C19 H10 31R sing 35 n n C19 H11 31R sing 36 n n C20 H12 31R sing 37 n n C20 H13 31R sing 38 n n O23 H14 31R sing 39 n n # _atom_sites.entry_id 4QFD _atom_sites.fract_transf_matrix[1][1] 0.011562 _atom_sites.fract_transf_matrix[1][2] 0.006675 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 403 NA NA . D 3 FAD A 1 402 401 FAD FAD . E 4 31R A 1 403 402 31R 036 . F 2 NA B 1 401 403 NA NA . G 3 FAD B 1 402 401 FAD FAD . H 4 31R B 1 403 402 31R 036 . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 3 HOH HOH . I 5 HOH A 3 503 4 HOH HOH . I 5 HOH A 4 504 5 HOH HOH . I 5 HOH A 5 505 6 HOH HOH . I 5 HOH A 6 506 7 HOH HOH . I 5 HOH A 7 507 8 HOH HOH . I 5 HOH A 8 508 9 HOH HOH . I 5 HOH A 9 509 10 HOH HOH . I 5 HOH A 10 510 11 HOH HOH . I 5 HOH A 11 511 12 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 13 HOH HOH . J 5 HOH B 3 503 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 31R . . . H 4 42.397 -15.537 20.494 1 89.42 ? O11 31R 403 B 1 HETATM 2 C C6 31R . . . H 4 41.157 -15.336 20.447 1 88.89 ? C6 31R 403 B 1 HETATM 3 O O1 31R . . . H 4 40.652 -14.196 19.853 1 87.43 ? O1 31R 403 B 1 HETATM 4 C C2 31R . . . H 4 39.298 -13.936 19.773 1 85.22 ? C2 31R 403 B 1 HETATM 5 C C7 31R . . . H 4 38.83 -12.772 19.159 1 83.56 ? C7 31R 403 B 1 HETATM 6 C C8 31R . . . H 4 37.459 -12.5 19.08 1 81.38 ? C8 31R 403 B 1 HETATM 7 O O12 31R . . . H 4 36.989 -11.372 18.481 1 78.16 ? O12 31R 403 B 1 HETATM 8 C C5 31R . . . H 4 40.285 -16.273 21.006 1 89.15 ? C5 31R 403 B 1 HETATM 9 C C4 31R . . . H 4 38.906 -16.072 20.95 1 87.41 ? C4 31R 403 B 1 HETATM 10 C C13 31R . . . H 4 37.974 -17.058 21.556 1 87.71 ? C13 31R 403 B 1 HETATM 11 C C14 31R . . . H 4 36.964 -17.66 20.812 1 87.84 ? C14 31R 403 B 1 HETATM 12 C C15 31R . . . H 4 36.094 -18.558 21.414 1 89.03 ? C15 31R 403 B 1 HETATM 13 C C16 31R . . . H 4 36.239 -18.861 22.763 1 89.98 ? C16 31R 403 B 1 HETATM 14 C C17 31R . . . H 4 37.244 -18.255 23.51 1 90.34 ? C17 31R 403 B 1 HETATM 15 C C18 31R . . . H 4 38.112 -17.353 22.905 1 88.84 ? C18 31R 403 B 1 HETATM 16 C C3 31R . . . H 4 38.381 -14.832 20.306 1 85.42 ? C3 31R 403 B 1 HETATM 17 C C10 31R . . . H 4 37.01 -14.558 20.228 1 83.73 ? C10 31R 403 B 1 HETATM 18 C C9 31R . . . H 4 36.552 -13.391 19.618 1 81.34 ? C9 31R 403 B 1 HETATM 19 C C19 31R . . . H 4 35.094 -13.041 19.483 1 80.05 ? C19 31R 403 B 1 HETATM 20 C C20 31R . . . H 4 34.13 -14.006 20.168 1 80.55 ? C20 31R 403 B 1 HETATM 21 C C21 31R . . . H 4 33.757 -15.223 19.346 1 81.46 ? C21 31R 403 B 1 HETATM 22 O O23 31R . . . H 4 33.115 -16.132 19.923 1 81.85 ? O23 31R 403 B 1 HETATM 23 O O22 31R . . . H 4 34.067 -15.299 18.137 1 82.71 ? O22 31R 403 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 1144 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #