data_4QFG # _model_server_result.job_id VkyrAGKF5Pg6cYk13JiI6w _model_server_result.datetime_utc '2025-01-10 10:10:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4QFG # _exptl.entry_id 4QFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QFG _cell.length_a 124.37 _cell.length_b 124.37 _cell.length_c 404.06 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.185 -107.707579 -67.343333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 331 n n O4 C21 STU sing 332 n n C25 C24 STU sing 333 n n C25 N3 STU sing 334 n n C25 H25 STU sing 335 n n C24 C23 STU sing 336 n n C24 H241 STU sing 337 n n C24 H242 STU sing 338 n n C23 C22 STU sing 339 n n C23 N4 STU sing 340 n n C23 H23 STU sing 341 n n C22 C21 STU sing 342 n n C22 O6 STU sing 343 n n C22 H22 STU sing 344 n n C21 C26 STU sing 345 n n C21 N2 STU sing 346 n n C26 H261 STU sing 347 n n C26 H262 STU sing 348 n n C26 H263 STU sing 349 n n N2 C18 STU sing 350 n y N2 C17 STU sing 351 n y C18 C19 STU doub 352 n y C18 C11 STU sing 353 n y C19 C6 STU sing 354 n y C19 N3 STU sing 355 n y C6 C7 STU doub 356 n y C6 C5 STU sing 357 n y C7 C10 STU sing 358 n y C7 C8 STU sing 359 n n C10 C11 STU doub 360 n y C10 C9 STU sing 361 n n C11 C12 STU sing 362 n y C12 C17 STU doub 363 n y C12 C13 STU sing 364 n y C17 C16 STU sing 365 n y C16 C15 STU doub 366 n y C16 H16 STU sing 367 n n C15 C14 STU sing 368 n y C15 H15 STU sing 369 n n C14 C13 STU doub 370 n y C14 H14 STU sing 371 n n C13 H13 STU sing 372 n n C9 N1 STU sing 373 n n C9 H91 STU sing 374 n n C9 H92 STU sing 375 n n N1 C8 STU sing 376 n n N1 HN1 STU sing 377 n n C8 O5 STU doub 378 n n C5 C20 STU doub 379 n y C5 C4 STU sing 380 n y C20 C1 STU sing 381 n y C20 N3 STU sing 382 n y C1 C2 STU doub 383 n y C1 H1 STU sing 384 n n C2 C3 STU sing 385 n y C2 H2 STU sing 386 n n C3 C4 STU doub 387 n y C3 H3 STU sing 388 n n C4 H4 STU sing 389 n n O6 C27 STU sing 390 n n C27 H271 STU sing 391 n n C27 H272 STU sing 392 n n C27 H273 STU sing 393 n n N4 C28 STU sing 394 n n N4 HN4 STU sing 395 n n C28 H281 STU sing 396 n n C28 H282 STU sing 397 n n C28 H283 STU sing 398 n n # _atom_sites.entry_id 4QFG _atom_sites.fract_transf_matrix[1][1] 0.008041 _atom_sites.fract_transf_matrix[1][2] 0.004642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 1549 STU STU . E 5 CL A 1 602 1 CL CL . F 5 CL A 1 603 2 CL CL . G 5 CL A 1 604 3 CL CL . H 6 SO4 A 1 605 6 SO4 SO4 . I 7 AMP C 1 401 1 AMP AMP . J 6 SO4 C 1 402 4 SO4 SO4 . K 6 SO4 C 1 403 5 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . D 4 44.371 -86.506 -26.492 1 46.28 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . D 4 44.87 -87.532 -25.626 1 48.38 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . D 4 43.869 -88.017 -24.578 1 46.83 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . D 4 42.466 -87.513 -24.863 1 44.07 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . D 4 42.51 -85.997 -24.914 1 49.9 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . D 4 43.503 -85.494 -25.968 1 47.7 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . D 4 42.733 -85.004 -27.189 1 46.5 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . D 4 44.304 -84.36 -25.41 1 50.37 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . D 4 45.525 -84.517 -24.837 1 51.01 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . D 4 46.357 -85.74 -24.627 1 52.7 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . D 4 47.663 -85.619 -23.976 1 53.03 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . D 4 48.106 -84.266 -23.551 1 49.67 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . D 4 47.325 -83.04 -23.738 1 47.68 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . D 4 45.997 -83.189 -24.403 1 49.09 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . D 4 44.926 -82.266 -24.777 1 49.62 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . D 4 43.851 -83.064 -25.42 1 51.1 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . D 4 42.727 -82.37 -25.857 1 52.29 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . D 4 42.659 -80.986 -25.674 1 52.16 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . D 4 43.689 -80.262 -25.063 1 51.33 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . D 4 44.84 -80.897 -24.606 1 50.08 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . D 4 48.042 -81.887 -23.211 1 49.42 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . D 4 49.305 -82.474 -22.692 1 52.54 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . D 4 49.342 -83.815 -22.883 1 52.74 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . D 4 50.312 -84.582 -22.534 1 56.19 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . D 4 48.182 -86.976 -23.937 1 55.06 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . D 4 47.146 -87.828 -24.57 1 53.41 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . D 4 47.421 -89.186 -24.649 1 56.14 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . D 4 48.627 -89.68 -24.143 1 58.74 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . D 4 49.584 -88.847 -23.55 1 58.28 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . D 4 49.371 -87.475 -23.44 1 57.66 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . D 4 46.093 -87.032 -24.953 1 51.63 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . D 4 42.862 -85.513 -23.614 1 56.02 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . D 4 41.727 -85.248 -22.789 1 59.83 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . D 4 41.539 -87.971 -23.847 1 41.38 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . D 4 40.109 -87.962 -24.082 1 41.69 ? C28 STU 601 A 1 HETATM 36 H H25 STU . . . D 4 45.144 -88.401 -26.241 1 48.66 ? H25 STU 601 A 1 HETATM 37 H H241 STU . . . D 4 44.183 -87.67 -23.592 1 47.04 ? H241 STU 601 A 1 HETATM 38 H H242 STU . . . D 4 43.864 -89.108 -24.561 1 46.9 ? H242 STU 601 A 1 HETATM 39 H H23 STU . . . D 4 42.143 -87.893 -25.843 1 43.81 ? H23 STU 601 A 1 HETATM 40 H H22 STU . . . D 4 41.506 -85.637 -25.183 1 50.22 ? H22 STU 601 A 1 HETATM 41 H H261 STU . . . D 4 43.316 -84.292 -27.713 1 46.94 ? H261 STU 601 A 1 HETATM 42 H H262 STU . . . D 4 41.825 -84.557 -26.878 1 46.34 ? H262 STU 601 A 1 HETATM 43 H H263 STU . . . D 4 42.522 -85.824 -27.826 1 46.59 ? H263 STU 601 A 1 HETATM 44 H H16 STU . . . D 4 41.903 -82.883 -26.334 1 52.82 ? H16 STU 601 A 1 HETATM 45 H H15 STU . . . D 4 41.779 -80.456 -26.017 1 53.14 ? H15 STU 601 A 1 HETATM 46 H H14 STU . . . D 4 43.589 -79.19 -24.945 1 52.09 ? H14 STU 601 A 1 HETATM 47 H H13 STU . . . D 4 45.638 -80.339 -24.132 1 50.29 ? H13 STU 601 A 1 HETATM 48 H H91 STU . . . D 4 48.245 -81.159 -24 1 50.33 ? H91 STU 601 A 1 HETATM 49 H H92 STU . . . D 4 47.476 -81.407 -22.41 1 49.11 ? H92 STU 601 A 1 HETATM 50 H HN1 STU . . . D 4 49.968 -81.796 -22.265 1 52.9 ? HN1 STU 601 A 1 HETATM 51 H H1 STU . . . D 4 46.705 -89.861 -25.101 1 56.49 ? H1 STU 601 A 1 HETATM 52 H H2 STU . . . D 4 48.829 -90.742 -24.211 1 59.9 ? H2 STU 601 A 1 HETATM 53 H H3 STU . . . D 4 50.504 -89.275 -23.172 1 58.9 ? H3 STU 601 A 1 HETATM 54 H H4 STU . . . D 4 50.107 -86.826 -22.982 1 58.32 ? H4 STU 601 A 1 HETATM 55 H H271 STU . . . D 4 41.98 -85.422 -21.776 1 59.16 ? H271 STU 601 A 1 HETATM 56 H H272 STU . . . D 4 40.927 -85.885 -23.066 1 61.16 ? H272 STU 601 A 1 HETATM 57 H H273 STU . . . D 4 41.431 -84.239 -22.911 1 60.68 ? H273 STU 601 A 1 HETATM 58 H HN4 STU . . . D 4 41.896 -88.301 -22.961 1 41.24 ? HN4 STU 601 A 1 HETATM 59 H H281 STU . . . D 4 39.62 -88.494 -23.308 1 41.84 ? H281 STU 601 A 1 HETATM 60 H H282 STU . . . D 4 39.76 -86.962 -24.096 1 41.53 ? H282 STU 601 A 1 HETATM 61 H H283 STU . . . D 4 39.901 -88.422 -25.012 1 42.06 ? H283 STU 601 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 649 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 61 #