data_4QFJ # _model_server_result.job_id I06jtGECpKVziyXQJ46VXw _model_server_result.datetime_utc '2024-12-21 08:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 4QFJ # _exptl.entry_id 4QFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QFJ _cell.length_a 39.415 _cell.length_b 42.42 _cell.length_c 154.312 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 IDS SGN C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SGN IDS C1 O1 . O4 HO4 . sing 3 ? 2 4 3 IDS SGN C1 O1 . O4 HO4 . sing 4 ? 2 5 4 SGN IDS C1 O1 . O4 HO4 . sing 5 ? 2 6 5 IDS SGN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C SGN 1 C 1 SGN D 3 HEP 2 n C IDS 2 C 2 IDS D 3 HEP 2 n C SGN 3 C 3 SGN D 2 HEP 2 n C IDS 4 C 4 IDS D 2 HEP 2 n C SGN 5 C 5 SGN D 1 HEP 2 n C IDS 6 C 6 IDS D 1 HEP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 26 1_555 A SG CYS 85 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 44 A CYS 39 1_555 A SG CYS 96 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 62 A CYS 57 1_555 A SG CYS 111 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 31 B CYS 26 1_555 B SG CYS 85 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 B SG CYS 44 B CYS 39 1_555 B SG CYS 96 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 62 B CYS 57 1_555 B SG CYS 111 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 C O4 SGN . C SGN 1 1_555 C C1 IDS . C IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing covale ? covale2 C O4 IDS . C IDS 2 1_555 C C1 SGN . C SGN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale3 C O4 SGN . C SGN 3 1_555 C C1 IDS . C IDS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale4 C O4 IDS . C IDS 4 1_555 C C1 SGN . C SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale5 C O4 SGN . C SGN 5 1_555 C C1 IDS . C IDS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing metalc ? metalc1 A OE2 GLU 46 A GLU 41 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 A OE1 GLU 46 A GLU 41 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc3 A ND1 HIS 87 A HIS 82 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 B OE1 GLU 46 B GLU 41 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 B OE2 GLU 46 B GLU 41 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 B ND1 HIS 87 B HIS 82 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc7 F ZN ZN . B ZN 201 1_555 G OXT ACY . B ACY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 4QFJ _atom_sites.fract_transf_matrix[1][1] 0.025371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 201 1 ZN ZN . E 4 ACY A 1 202 1 ACY ACY . F 3 ZN B 1 201 2 ZN ZN . G 4 ACY B 1 202 2 ACY ACY . H 5 HOH A 1 301 32 HOH HOH . H 5 HOH A 2 302 3 HOH HOH . H 5 HOH A 3 303 78 HOH HOH . H 5 HOH A 4 304 65 HOH HOH . H 5 HOH A 5 305 67 HOH HOH . H 5 HOH A 6 306 55 HOH HOH . H 5 HOH A 7 307 68 HOH HOH . H 5 HOH A 8 308 73 HOH HOH . H 5 HOH A 9 309 54 HOH HOH . H 5 HOH A 10 310 24 HOH HOH . H 5 HOH A 11 311 17 HOH HOH . H 5 HOH A 12 312 14 HOH HOH . H 5 HOH A 13 313 4 HOH HOH . H 5 HOH A 14 314 16 HOH HOH . H 5 HOH A 15 315 126 HOH HOH . H 5 HOH A 16 316 31 HOH HOH . H 5 HOH A 17 317 106 HOH HOH . H 5 HOH A 18 318 15 HOH HOH . H 5 HOH A 19 319 1 HOH HOH . H 5 HOH A 20 320 25 HOH HOH . H 5 HOH A 21 321 13 HOH HOH . H 5 HOH A 22 322 10 HOH HOH . H 5 HOH A 23 323 28 HOH HOH . H 5 HOH A 24 324 36 HOH HOH . H 5 HOH A 25 325 115 HOH HOH . H 5 HOH A 26 326 9 HOH HOH . H 5 HOH A 27 327 19 HOH HOH . H 5 HOH A 28 328 76 HOH HOH . H 5 HOH A 29 329 38 HOH HOH . H 5 HOH A 30 330 39 HOH HOH . H 5 HOH A 31 331 69 HOH HOH . H 5 HOH A 32 332 101 HOH HOH . H 5 HOH A 33 333 81 HOH HOH . H 5 HOH A 34 334 82 HOH HOH . H 5 HOH A 35 335 30 HOH HOH . H 5 HOH A 36 336 72 HOH HOH . H 5 HOH A 37 337 79 HOH HOH . H 5 HOH A 38 338 80 HOH HOH . I 5 HOH B 1 301 34 HOH HOH . I 5 HOH B 2 302 57 HOH HOH . I 5 HOH B 3 303 60 HOH HOH . I 5 HOH B 4 304 123 HOH HOH . I 5 HOH B 5 305 33 HOH HOH . I 5 HOH B 6 306 122 HOH HOH . I 5 HOH B 7 307 23 HOH HOH . I 5 HOH B 8 308 61 HOH HOH . I 5 HOH B 9 309 18 HOH HOH . I 5 HOH B 10 310 40 HOH HOH . I 5 HOH B 11 311 89 HOH HOH . I 5 HOH B 12 312 92 HOH HOH . I 5 HOH B 13 313 108 HOH HOH . I 5 HOH B 14 314 86 HOH HOH . I 5 HOH B 15 315 8 HOH HOH . I 5 HOH B 16 316 70 HOH HOH . I 5 HOH B 17 317 127 HOH HOH . I 5 HOH B 18 318 91 HOH HOH . I 5 HOH B 19 319 74 HOH HOH . I 5 HOH B 20 320 5 HOH HOH . I 5 HOH B 21 321 110 HOH HOH . I 5 HOH B 22 322 107 HOH HOH . I 5 HOH B 23 323 112 HOH HOH . I 5 HOH B 24 324 90 HOH HOH . I 5 HOH B 25 325 87 HOH HOH . I 5 HOH B 26 326 114 HOH HOH . I 5 HOH B 27 327 71 HOH HOH . I 5 HOH B 28 328 83 HOH HOH . I 5 HOH B 29 329 93 HOH HOH . I 5 HOH B 30 330 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . G 4 8.347 -32.362 -12.708 1 39.15 ? C ACY 202 B 1 HETATM 2 O O ACY . . . G 4 9.055 -33.217 -13.285 1 45.58 ? O ACY 202 B 1 HETATM 3 O OXT ACY . . . G 4 8.681 -31.154 -12.604 1 31.91 ? OXT ACY 202 B 1 HETATM 4 C CH3 ACY . . . G 4 7.041 -32.852 -12.133 1 36.58 ? CH3 ACY 202 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #