data_4QFR
#
_model_server_result.job_id            TMDI9opaXALYQycxeATZQA 
_model_server_result.datetime_utc      '2025-01-10 05:24:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qfr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    4QFR 
#
_exptl.entry_id    4QFR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4QFR 
_cell.length_a            124.62 
_cell.length_b            124.62 
_cell.length_c            402.92 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QFR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 
A,D,E,F,G,H,I 3 1,3 
B,C,J,K,L,M,N 3 4,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.31 -107.924086 -67.153333 
3 'crystal symmetry operation' 8_435 x-y-1,-y-2,-z 1 0 0 0 -1 0 0 0 -1 0 -215.848172 0 
4 'crystal symmetry operation' 6_445 x-y-1,x-1,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 -62.31 -107.924086 67.153333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 K N N 
? 7 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 98 n n 
P O2P AMP sing 99 n n 
P O3P AMP sing 100 n n 
P O5' AMP sing 101 n n 
O2P HOP2 AMP sing 102 n n 
O3P HOP3 AMP sing 103 n n 
O5' C5' AMP sing 104 n n 
C5' C4' AMP sing 105 n n 
C5' "H5'1" AMP sing 106 n n 
C5' "H5'2" AMP sing 107 n n 
C4' O4' AMP sing 108 n n 
C4' C3' AMP sing 109 n n 
C4' H4' AMP sing 110 n n 
O4' C1' AMP sing 111 n n 
C3' O3' AMP sing 112 n n 
C3' C2' AMP sing 113 n n 
C3' H3' AMP sing 114 n n 
O3' HO3' AMP sing 115 n n 
C2' O2' AMP sing 116 n n 
C2' C1' AMP sing 117 n n 
C2' H2' AMP sing 118 n n 
O2' HO2' AMP sing 119 n n 
C1' N9 AMP sing 120 n n 
C1' H1' AMP sing 121 n n 
N9 C8 AMP sing 122 n y 
N9 C4 AMP sing 123 n y 
C8 N7 AMP doub 124 n y 
C8 H8 AMP sing 125 n n 
N7 C5 AMP sing 126 n y 
C5 C6 AMP sing 127 n y 
C5 C4 AMP doub 128 n y 
C6 N6 AMP sing 129 n n 
C6 N1 AMP doub 130 n y 
N6 HN61 AMP sing 131 n n 
N6 HN62 AMP sing 132 n n 
N1 C2 AMP sing 133 n y 
C2 N3 AMP doub 134 n y 
C2 H2 AMP sing 135 n n 
N3 C4 AMP sing 136 n y 
#
_atom_sites.entry_id                     4QFR 
_atom_sites.fract_transf_matrix[1][1]    0.008024 
_atom_sites.fract_transf_matrix[1][2]    0.004633 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002482 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 1549 STU STU . 
E 5 CL A 1 602 1 CL CL . 
F 5 CL A 1 603 2 CL CL . 
G 5 CL A 1 604 4 CL CL . 
H 5 CL A 1 605 5 CL CL . 
I 6 32J A 1 606 1 32J PFE . 
J 5 CL B 1 301 3 CL CL . 
K 7 AMP C 1 401 1 AMP AMP . 
L 7 AMP C 1 402 2 AMP AMP . 
M 8 ADP C 1 403 3 ADP ADP . 
N 9 SO4 C 1 404 1 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . K 7 26.316 -37.066 20.628 1 149.89 ? P AMP 401 C 1 
HETATM 2 O O1P AMP . . . K 7 26.887 -37.999 19.603 1 148.45 ? O1P AMP 401 C 1 
HETATM 3 O O2P AMP . . . K 7 25.073 -36.301 20.152 1 143.96 ? O2P AMP 401 C 1 
HETATM 4 O O3P AMP . . . K 7 25.956 -37.753 21.948 1 148.98 ? O3P AMP 401 C 1 
HETATM 5 O O5' AMP . . . K 7 27.376 -35.953 20.982 1 160.4 ? O5' AMP 401 C 1 
HETATM 6 C C5' AMP . . . K 7 27.742 -34.76 20.255 1 165.03 ? C5' AMP 401 C 1 
HETATM 7 C C4' AMP . . . K 7 28.164 -33.665 21.208 1 169.1 ? C4' AMP 401 C 1 
HETATM 8 O O4' AMP . . . K 7 27.133 -33.433 22.194 1 169.34 ? O4' AMP 401 C 1 
HETATM 9 C C3' AMP . . . K 7 29.462 -33.893 21.981 1 169.22 ? C3' AMP 401 C 1 
HETATM 10 O O3' AMP . . . K 7 30.251 -32.708 22.028 1 170.67 ? O3' AMP 401 C 1 
HETATM 11 C C2' AMP . . . K 7 28.971 -34.343 23.359 1 168.42 ? C2' AMP 401 C 1 
HETATM 12 O O2' AMP . . . K 7 29.89 -34.018 24.394 1 168.15 ? O2' AMP 401 C 1 
HETATM 13 C C1' AMP . . . K 7 27.672 -33.55 23.496 1 169.86 ? C1' AMP 401 C 1 
HETATM 14 N N9 AMP . . . K 7 26.665 -34.17 24.355 1 171.04 ? N9 AMP 401 C 1 
HETATM 15 C C8 AMP . . . K 7 26.132 -35.429 24.242 1 170.8 ? C8 AMP 401 C 1 
HETATM 16 N N7 AMP . . . K 7 25.24 -35.716 25.158 1 168.89 ? N7 AMP 401 C 1 
HETATM 17 C C5 AMP . . . K 7 25.176 -34.564 25.928 1 170.7 ? C5 AMP 401 C 1 
HETATM 18 C C6 AMP . . . K 7 24.394 -34.21 27.048 1 169.9 ? C6 AMP 401 C 1 
HETATM 19 N N6 AMP . . . K 7 23.537 -35.039 27.649 1 166.2 ? N6 AMP 401 C 1 
HETATM 20 N N1 AMP . . . K 7 24.54 -32.961 27.547 1 171.11 ? N1 AMP 401 C 1 
HETATM 21 C C2 AMP . . . K 7 25.42 -32.134 26.969 1 171.87 ? C2 AMP 401 C 1 
HETATM 22 N N3 AMP . . . K 7 26.219 -32.36 25.922 1 171.75 ? N3 AMP 401 C 1 
HETATM 23 C C4 AMP . . . K 7 26.047 -33.602 25.443 1 171.26 ? C4 AMP 401 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           23 
#