data_4QFR # _model_server_result.job_id uaPNxNzkj1L5t2QfiOQPHg _model_server_result.datetime_utc '2025-01-10 05:10:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4QFR # _exptl.entry_id 4QFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QFR _cell.length_a 124.62 _cell.length_b 124.62 _cell.length_c 402.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 A,D,E,F,G,H,I 3 1,3 B,C,J,K,L,M,N 3 4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.31 -107.924086 -67.153333 3 'crystal symmetry operation' 8_435 x-y-1,-y-2,-z 1 0 0 0 -1 0 0 0 -1 0 -215.848172 0 4 'crystal symmetry operation' 6_445 x-y-1,x-1,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 -62.31 -107.924086 67.153333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 416 n n O4 C21 STU sing 417 n n C25 C24 STU sing 418 n n C25 N3 STU sing 419 n n C25 H25 STU sing 420 n n C24 C23 STU sing 421 n n C24 H241 STU sing 422 n n C24 H242 STU sing 423 n n C23 C22 STU sing 424 n n C23 N4 STU sing 425 n n C23 H23 STU sing 426 n n C22 C21 STU sing 427 n n C22 O6 STU sing 428 n n C22 H22 STU sing 429 n n C21 C26 STU sing 430 n n C21 N2 STU sing 431 n n C26 H261 STU sing 432 n n C26 H262 STU sing 433 n n C26 H263 STU sing 434 n n N2 C18 STU sing 435 n y N2 C17 STU sing 436 n y C18 C19 STU doub 437 n y C18 C11 STU sing 438 n y C19 C6 STU sing 439 n y C19 N3 STU sing 440 n y C6 C7 STU doub 441 n y C6 C5 STU sing 442 n y C7 C10 STU sing 443 n y C7 C8 STU sing 444 n n C10 C11 STU doub 445 n y C10 C9 STU sing 446 n n C11 C12 STU sing 447 n y C12 C17 STU doub 448 n y C12 C13 STU sing 449 n y C17 C16 STU sing 450 n y C16 C15 STU doub 451 n y C16 H16 STU sing 452 n n C15 C14 STU sing 453 n y C15 H15 STU sing 454 n n C14 C13 STU doub 455 n y C14 H14 STU sing 456 n n C13 H13 STU sing 457 n n C9 N1 STU sing 458 n n C9 H91 STU sing 459 n n C9 H92 STU sing 460 n n N1 C8 STU sing 461 n n N1 HN1 STU sing 462 n n C8 O5 STU doub 463 n n C5 C20 STU doub 464 n y C5 C4 STU sing 465 n y C20 C1 STU sing 466 n y C20 N3 STU sing 467 n y C1 C2 STU doub 468 n y C1 H1 STU sing 469 n n C2 C3 STU sing 470 n y C2 H2 STU sing 471 n n C3 C4 STU doub 472 n y C3 H3 STU sing 473 n n C4 H4 STU sing 474 n n O6 C27 STU sing 475 n n C27 H271 STU sing 476 n n C27 H272 STU sing 477 n n C27 H273 STU sing 478 n n N4 C28 STU sing 479 n n N4 HN4 STU sing 480 n n C28 H281 STU sing 481 n n C28 H282 STU sing 482 n n C28 H283 STU sing 483 n n # _atom_sites.entry_id 4QFR _atom_sites.fract_transf_matrix[1][1] 0.008024 _atom_sites.fract_transf_matrix[1][2] 0.004633 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 1549 STU STU . E 5 CL A 1 602 1 CL CL . F 5 CL A 1 603 2 CL CL . G 5 CL A 1 604 4 CL CL . H 5 CL A 1 605 5 CL CL . I 6 32J A 1 606 1 32J PFE . J 5 CL B 1 301 3 CL CL . K 7 AMP C 1 401 1 AMP AMP . L 7 AMP C 1 402 2 AMP AMP . M 8 ADP C 1 403 3 ADP ADP . N 9 SO4 C 1 404 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . D 4 42.077 -86.468 -26.498 1 54.02 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . D 4 42.635 -87.506 -25.683 1 55.01 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . D 4 41.672 -88.083 -24.646 1 59.64 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . D 4 40.243 -87.632 -24.891 1 61.36 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . D 4 40.22 -86.115 -24.875 1 60.98 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . D 4 41.169 -85.521 -25.921 1 56.54 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . D 4 40.356 -85.019 -27.108 1 56.75 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . D 4 41.924 -84.375 -25.325 1 57.18 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . D 4 43.158 -84.498 -24.773 1 57.53 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . D 4 44.049 -85.688 -24.625 1 58.55 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . D 4 45.356 -85.533 -23.984 1 59 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . D 4 45.741 -84.18 -23.507 1 58.1 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . D 4 44.902 -82.986 -23.632 1 57.05 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . D 4 43.573 -83.168 -24.289 1 56.56 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . D 4 42.456 -82.282 -24.611 1 56.97 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . D 4 41.41 -83.102 -25.275 1 56.17 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . D 4 40.25 -82.443 -25.669 1 56.78 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . D 4 40.121 -81.072 -25.426 1 59.94 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . D 4 41.124 -80.327 -24.796 1 63.13 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . D 4 42.309 -80.927 -24.38 1 60.94 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . D 4 45.572 -81.823 -23.065 1 59.95 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . D 4 46.867 -82.371 -22.586 1 62.79 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . D 4 46.964 -83.699 -22.834 1 61.35 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . D 4 47.973 -84.433 -22.529 1 63.3 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . D 4 45.939 -86.864 -24.008 1 57.88 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . D 4 44.936 -87.737 -24.665 1 56.11 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . D 4 45.273 -89.076 -24.805 1 57.77 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . D 4 46.508 -89.533 -24.334 1 60.42 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . D 4 47.432 -88.681 -23.717 1 59.12 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . D 4 47.156 -87.327 -23.546 1 58.4 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . D 4 43.841 -86.976 -25.002 1 56.08 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . D 4 40.575 -85.679 -23.559 1 68.09 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . D 4 39.817 -84.556 -23.109 1 71.42 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . D 4 39.353 -88.172 -23.883 1 66.53 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . D 4 37.915 -88.164 -24.075 1 70 ? C28 STU 601 A 1 HETATM 36 H H25 STU . . . D 4 42.941 -88.333 -26.338 1 55.05 ? H25 STU 601 A 1 HETATM 37 H H241 STU . . . D 4 41.983 -87.767 -23.648 1 59.91 ? H241 STU 601 A 1 HETATM 38 H H242 STU . . . D 4 41.716 -89.174 -24.679 1 60.64 ? H242 STU 601 A 1 HETATM 39 H H23 STU . . . D 4 39.923 -87.984 -25.882 1 61.51 ? H23 STU 601 A 1 HETATM 40 H H22 STU . . . D 4 39.195 -85.793 -25.112 1 60.11 ? H22 STU 601 A 1 HETATM 41 H H261 STU . . . D 4 40.905 -84.273 -27.622 1 57.32 ? H261 STU 601 A 1 HETATM 42 H H262 STU . . . D 4 39.442 -84.609 -26.761 1 56.39 ? H262 STU 601 A 1 HETATM 43 H H263 STU . . . D 4 40.154 -85.825 -27.764 1 57.34 ? H263 STU 601 A 1 HETATM 44 H H16 STU . . . D 4 39.444 -82.973 -26.157 1 56.75 ? H16 STU 601 A 1 HETATM 45 H H15 STU . . . D 4 39.213 -80.57 -25.736 1 60.9 ? H15 STU 601 A 1 HETATM 46 H H14 STU . . . D 4 40.976 -79.267 -24.631 1 64.85 ? H14 STU 601 A 1 HETATM 47 H H13 STU . . . D 4 43.087 -80.353 -23.892 1 61.35 ? H13 STU 601 A 1 HETATM 48 H H91 STU . . . D 4 45.73 -81.054 -23.825 1 60.48 ? H91 STU 601 A 1 HETATM 49 H H92 STU . . . D 4 44.994 -81.404 -22.238 1 59.82 ? H92 STU 601 A 1 HETATM 50 H HN1 STU . . . D 4 47.504 -81.681 -22.139 1 63.9 ? HN1 STU 601 A 1 HETATM 51 H H1 STU . . . D 4 44.583 -89.765 -25.277 1 57.93 ? H1 STU 601 A 1 HETATM 52 H H2 STU . . . D 4 46.757 -90.58 -24.449 1 62.04 ? H2 STU 601 A 1 HETATM 53 H H3 STU . . . D 4 48.376 -89.081 -23.368 1 59.96 ? H3 STU 601 A 1 HETATM 54 H H4 STU . . . D 4 47.867 -86.663 -23.07 1 59.24 ? H4 STU 601 A 1 HETATM 55 H H271 STU . . . D 4 40.42 -83.953 -22.481 1 70.82 ? H271 STU 601 A 1 HETATM 56 H H272 STU . . . D 4 38.973 -84.895 -22.567 1 71.19 ? H272 STU 601 A 1 HETATM 57 H H273 STU . . . D 4 39.495 -83.985 -23.941 1 72.86 ? H273 STU 601 A 1 HETATM 58 H HN4 STU . . . D 4 39.739 -88.559 -23.034 1 66.87 ? HN4 STU 601 A 1 HETATM 59 H H281 STU . . . D 4 37.559 -89.161 -24.114 1 70.18 ? H281 STU 601 A 1 HETATM 60 H H282 STU . . . D 4 37.454 -87.656 -23.268 1 70.38 ? H282 STU 601 A 1 HETATM 61 H H283 STU . . . D 4 37.683 -87.67 -24.982 1 70.57 ? H283 STU 601 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 61 #