data_4QG2
#
_model_server_result.job_id            TbwMR27Afi2tOo9c4jqjRQ 
_model_server_result.datetime_utc      '2024-11-07 00:33:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":701}' 
#
_entry.id    4QG2 
#
_exptl.entry_id    4QG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.6 
_cell.angle_gamma         90 
_cell.entry_id            4QG2 
_cell.length_a            87.23 
_cell.length_b            147.005 
_cell.length_c            99.292 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 265 A CYS 341 1_555 A SG CYS 274 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 C SG CYS 265 C CYS 341 1_555 C SG CYS 274 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 E O1G GTP . A GTP 701 1_555 P MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc2 E O1A GTP . A GTP 701 1_555 P MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc3 E O1B GTP . A GTP 701 1_555 P MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 F O1B DTP . A DTP 702 1_555 H MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? 
metalc ? metalc5 F O1G DTP . A DTP 702 1_555 H MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc6 G MG MG . A MG 703 1_555 K O2G DTP . B DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc7 G MG MG . A MG 703 1_555 K O3B DTP . B DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc8 G MG MG . A MG 703 1_555 K O2B DTP . B DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
metalc ? metalc9 G MG MG . A MG 703 1_555 O O1B GTP . D GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc10 G MG MG . A MG 703 1_555 O O1G GTP . D GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc11 G MG MG . A MG 703 1_555 O O1A GTP . D GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc12 H MG MG . A MG 704 1_555 Q O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc13 H MG MG . A MG 704 1_555 J O3G GTP . B GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? 
metalc ? metalc14 H MG MG . A MG 704 1_555 J O2B GTP . B GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc15 H MG MG . A MG 704 1_555 J O2A GTP . B GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc16 I O2A GTP . B GTP 701 1_555 M MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc17 I O3G GTP . B GTP 701 1_555 M MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc18 L O2B DTP . C DTP 701 1_555 P MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc19 L O2G DTP . C DTP 701 1_555 P MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc20 M MG MG . C MG 702 1_555 N O2B DTP . D DTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc21 M MG MG . C MG 702 1_555 N O1G DTP . D DTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     4QG2 
_atom_sites.fract_transf_matrix[1][1]    0.011464 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005249 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006802 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GTP A 1 701 900 GTP GTP . 
F 3 DTP A 1 702 800 DTP DAT . 
G 4 MG A 1 703 1 MG MG . 
H 4 MG A 1 704 1 MG MG . 
I 2 GTP B 1 701 900 GTP GTP . 
J 2 GTP B 1 702 900 GTP GTP . 
K 3 DTP B 1 703 800 DTP DAT . 
L 3 DTP C 1 701 800 DTP DAT . 
M 4 MG C 1 702 1 MG MG . 
N 3 DTP D 1 701 800 DTP DAT . 
O 2 GTP D 1 702 900 GTP GTP . 
P 4 MG D 1 703 1 MG MG . 
Q 5 HOH A 1 801 4 HOH HOH . 
Q 5 HOH A 2 802 6 HOH HOH . 
Q 5 HOH A 3 803 16 HOH HOH . 
Q 5 HOH A 4 804 21 HOH HOH . 
Q 5 HOH A 5 805 25 HOH HOH . 
Q 5 HOH A 6 806 32 HOH HOH . 
Q 5 HOH A 7 807 33 HOH HOH . 
Q 5 HOH A 8 808 38 HOH HOH . 
Q 5 HOH A 9 809 44 HOH HOH . 
Q 5 HOH A 10 810 47 HOH HOH . 
Q 5 HOH A 11 811 49 HOH HOH . 
Q 5 HOH A 12 812 54 HOH HOH . 
Q 5 HOH A 13 813 55 HOH HOH . 
Q 5 HOH A 14 814 56 HOH HOH . 
Q 5 HOH A 15 815 62 HOH HOH . 
Q 5 HOH A 16 816 64 HOH HOH . 
Q 5 HOH A 17 817 69 HOH HOH . 
Q 5 HOH A 18 818 76 HOH HOH . 
R 5 HOH B 1 801 9 HOH HOH . 
R 5 HOH B 2 802 11 HOH HOH . 
R 5 HOH B 3 803 12 HOH HOH . 
R 5 HOH B 4 804 15 HOH HOH . 
R 5 HOH B 5 805 22 HOH HOH . 
R 5 HOH B 6 806 26 HOH HOH . 
R 5 HOH B 7 807 36 HOH HOH . 
R 5 HOH B 8 808 41 HOH HOH . 
R 5 HOH B 9 809 45 HOH HOH . 
R 5 HOH B 10 810 48 HOH HOH . 
R 5 HOH B 11 811 52 HOH HOH . 
R 5 HOH B 12 812 59 HOH HOH . 
R 5 HOH B 13 813 65 HOH HOH . 
R 5 HOH B 14 814 67 HOH HOH . 
R 5 HOH B 15 815 70 HOH HOH . 
R 5 HOH B 16 816 72 HOH HOH . 
S 5 HOH C 1 801 8 HOH HOH . 
S 5 HOH C 2 802 18 HOH HOH . 
S 5 HOH C 3 803 20 HOH HOH . 
S 5 HOH C 4 804 23 HOH HOH . 
S 5 HOH C 5 805 24 HOH HOH . 
S 5 HOH C 6 806 30 HOH HOH . 
S 5 HOH C 7 807 31 HOH HOH . 
S 5 HOH C 8 808 34 HOH HOH . 
S 5 HOH C 9 809 35 HOH HOH . 
S 5 HOH C 10 810 37 HOH HOH . 
S 5 HOH C 11 811 39 HOH HOH . 
S 5 HOH C 12 812 46 HOH HOH . 
S 5 HOH C 13 813 60 HOH HOH . 
S 5 HOH C 14 814 68 HOH HOH . 
S 5 HOH C 15 815 73 HOH HOH . 
S 5 HOH C 16 816 75 HOH HOH . 
T 5 HOH D 1 801 1 HOH HOH . 
T 5 HOH D 2 802 2 HOH HOH . 
T 5 HOH D 3 803 3 HOH HOH . 
T 5 HOH D 4 804 5 HOH HOH . 
T 5 HOH D 5 805 7 HOH HOH . 
T 5 HOH D 6 806 10 HOH HOH . 
T 5 HOH D 7 807 13 HOH HOH . 
T 5 HOH D 8 808 14 HOH HOH . 
T 5 HOH D 9 809 17 HOH HOH . 
T 5 HOH D 10 810 19 HOH HOH . 
T 5 HOH D 11 811 27 HOH HOH . 
T 5 HOH D 12 812 28 HOH HOH . 
T 5 HOH D 13 813 29 HOH HOH . 
T 5 HOH D 14 814 40 HOH HOH . 
T 5 HOH D 15 815 43 HOH HOH . 
T 5 HOH D 16 816 50 HOH HOH . 
T 5 HOH D 17 817 51 HOH HOH . 
T 5 HOH D 18 818 53 HOH HOH . 
T 5 HOH D 19 819 57 HOH HOH . 
T 5 HOH D 20 820 58 HOH HOH . 
T 5 HOH D 21 821 61 HOH HOH . 
T 5 HOH D 22 822 63 HOH HOH . 
T 5 HOH D 23 823 66 HOH HOH . 
T 5 HOH D 24 824 71 HOH HOH . 
T 5 HOH D 25 825 74 HOH HOH . 
T 5 HOH D 26 826 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . L 3 -19.033 -20.109 45.998 0.78 48.38 ? PG DTP 701 C 1 
HETATM 2 O O1G DTP . . . L 3 -18.124 -20.886 45.1 1 55.94 ? O1G DTP 701 C 1 
HETATM 3 O O2G DTP . . . L 3 -18.624 -20.362 47.471 0.89 46.27 ? O2G DTP 701 C 1 
HETATM 4 O O3G DTP . . . L 3 -20.416 -20.575 45.815 0.9 57.2 ? O3G DTP 701 C 1 
HETATM 5 P PB DTP . . . L 3 -17.694 -17.656 46.118 0.87 47.55 ? PB DTP 701 C 1 
HETATM 6 O O1B DTP . . . L 3 -18.193 -16.228 46.39 1 60.06 ? O1B DTP 701 C 1 
HETATM 7 O O2B DTP . . . L 3 -17.077 -18.179 47.426 0.96 45.2 ? O2B DTP 701 C 1 
HETATM 8 O O3B DTP . . . L 3 -18.953 -18.59 45.654 0.47 58.58 ? O3B DTP 701 C 1 
HETATM 9 P PA DTP . . . L 3 -16.603 -16.684 43.683 0.88 47.98 ? PA DTP 701 C 1 
HETATM 10 O O1A DTP . . . L 3 -16.483 -17.537 42.453 0.94 48.46 ? O1A DTP 701 C 1 
HETATM 11 O O2A DTP . . . L 3 -17.921 -15.898 43.616 1 47.48 ? O2A DTP 701 C 1 
HETATM 12 O O3A DTP . . . L 3 -16.533 -17.61 44.992 0.63 50.68 ? O3A DTP 701 C 1 
HETATM 13 O O5' DTP . . . L 3 -15.371 -15.67 43.739 0.85 52.99 ? O5' DTP 701 C 1 
HETATM 14 C C5' DTP . . . L 3 -14.071 -16.088 43.317 1 46.88 ? C5' DTP 701 C 1 
HETATM 15 C C4' DTP . . . L 3 -13.084 -15.082 43.039 1 50.46 ? C4' DTP 701 C 1 
HETATM 16 O O4' DTP . . . L 3 -13.298 -14.584 41.679 0.79 48.63 ? O4' DTP 701 C 1 
HETATM 17 C C3' DTP . . . L 3 -13.25 -13.923 43.949 0.62 53.59 ? C3' DTP 701 C 1 
HETATM 18 O O3' DTP . . . L 3 -12.018 -13.384 44.22 1 53.46 ? O3' DTP 701 C 1 
HETATM 19 C C2' DTP . . . L 3 -14.059 -12.95 43.206 1 47.33 ? C2' DTP 701 C 1 
HETATM 20 C C1' DTP . . . L 3 -13.897 -13.312 41.76 0.88 49.55 ? C1' DTP 701 C 1 
HETATM 21 N N9 DTP . . . L 3 -15.125 -13.294 40.986 0.99 49.19 ? N9 DTP 701 C 1 
HETATM 22 C C8 DTP . . . L 3 -16.378 -13.507 41.423 0.75 51.71 ? C8 DTP 701 C 1 
HETATM 23 N N7 DTP . . . L 3 -17.221 -13.468 40.38 0.96 44.83 ? N7 DTP 701 C 1 
HETATM 24 C C5 DTP . . . L 3 -16.501 -13.231 39.255 0.99 44.23 ? C5 DTP 701 C 1 
HETATM 25 C C6 DTP . . . L 3 -16.795 -13.083 37.899 0.99 46.15 ? C6 DTP 701 C 1 
HETATM 26 N N6 DTP . . . L 3 -18.141 -13.193 37.42 1 51.04 ? N6 DTP 701 C 1 
HETATM 27 N N1 DTP . . . L 3 -15.795 -12.85 37.032 0.82 46.92 ? N1 DTP 701 C 1 
HETATM 28 C C2 DTP . . . L 3 -14.531 -12.757 37.448 0.75 47.35 ? C2 DTP 701 C 1 
HETATM 29 N N3 DTP . . . L 3 -14.215 -12.891 38.737 0.81 48.98 ? N3 DTP 701 C 1 
HETATM 30 C C4 DTP . . . L 3 -15.173 -13.128 39.652 0.94 49.1 ? C4 DTP 701 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           30 
#