data_4QGD # _model_server_result.job_id gM4m9EXuhY6IL-sqYM1Maw _model_server_result.datetime_utc '2024-12-26 22:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4QGD # _exptl.entry_id 4QGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{3-[(DIMETHYLAMINO)METHYL]-1H-INDOL-7-YL}PROPAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QGD _cell.length_a 51.572 _cell.length_b 51.572 _cell.length_c 48.097 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C14 H20 N2 O' _chem_comp.formula_weight 232.321 _chem_comp.id PZZ _chem_comp.mon_nstd_flag . _chem_comp.name 3-{3-[(DIMETHYLAMINO)METHYL]-1H-INDOL-7-YL}PROPAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 PZZ sing 277 n y C2 C3 PZZ doub 278 n y C2 H2 PZZ sing 279 n n C3 C8 PZZ sing 280 n y C3 C10 PZZ sing 281 n n N1 C9 PZZ sing 282 n y N1 HN1 PZZ sing 283 n n C4 C5 PZZ doub 284 n y C4 C8 PZZ sing 285 n y C4 H4 PZZ sing 286 n n C5 C6 PZZ sing 287 n y C5 H5 PZZ sing 288 n n C6 C7 PZZ doub 289 n y C6 H6 PZZ sing 290 n n C7 C14 PZZ sing 291 n n C7 C9 PZZ sing 292 n y C8 C9 PZZ doub 293 n y C10 N11 PZZ sing 294 n n C10 H101 PZZ sing 295 n n C10 H102 PZZ sing 296 n n N11 C12 PZZ sing 297 n n N11 C13 PZZ sing 298 n n C12 H121 PZZ sing 299 n n C12 H122 PZZ sing 300 n n C12 H123 PZZ sing 301 n n C13 H131 PZZ sing 302 n n C13 H132 PZZ sing 303 n n C13 H133 PZZ sing 304 n n C14 C15 PZZ sing 305 n n C14 H141 PZZ sing 306 n n C14 H142 PZZ sing 307 n n C15 C16 PZZ sing 308 n n C15 H151 PZZ sing 309 n n C15 H152 PZZ sing 310 n n C16 O17 PZZ sing 311 n n C16 H161 PZZ sing 312 n n C16 H162 PZZ sing 313 n n O17 HO17 PZZ sing 314 n n # _atom_sites.entry_id 4QGD _atom_sites.fract_transf_matrix[1][1] 0.01939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PZZ A 1 201 1 PZZ PZZ . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 5 HOH HOH . C 3 HOH A 5 305 6 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 10 HOH HOH . C 3 HOH A 9 309 11 HOH HOH . C 3 HOH A 10 310 12 HOH HOH . C 3 HOH A 11 311 13 HOH HOH . C 3 HOH A 12 312 14 HOH HOH . C 3 HOH A 13 313 15 HOH HOH . C 3 HOH A 14 314 16 HOH HOH . C 3 HOH A 15 315 17 HOH HOH . C 3 HOH A 16 316 18 HOH HOH . C 3 HOH A 17 317 19 HOH HOH . C 3 HOH A 18 318 20 HOH HOH . C 3 HOH A 19 319 21 HOH HOH . C 3 HOH A 20 320 22 HOH HOH . C 3 HOH A 21 321 23 HOH HOH . C 3 HOH A 22 322 24 HOH HOH . C 3 HOH A 23 323 25 HOH HOH . C 3 HOH A 24 324 26 HOH HOH . C 3 HOH A 25 325 27 HOH HOH . C 3 HOH A 26 326 28 HOH HOH . C 3 HOH A 27 327 29 HOH HOH . C 3 HOH A 28 328 30 HOH HOH . C 3 HOH A 29 329 31 HOH HOH . C 3 HOH A 30 330 32 HOH HOH . C 3 HOH A 31 331 33 HOH HOH . C 3 HOH A 32 332 34 HOH HOH . C 3 HOH A 33 333 35 HOH HOH . C 3 HOH A 34 334 36 HOH HOH . C 3 HOH A 35 335 37 HOH HOH . C 3 HOH A 36 336 38 HOH HOH . C 3 HOH A 37 337 39 HOH HOH . C 3 HOH A 38 338 40 HOH HOH . C 3 HOH A 39 339 41 HOH HOH . C 3 HOH A 40 340 42 HOH HOH . C 3 HOH A 41 341 43 HOH HOH . C 3 HOH A 42 342 44 HOH HOH . C 3 HOH A 43 343 45 HOH HOH . C 3 HOH A 44 344 46 HOH HOH . C 3 HOH A 45 345 47 HOH HOH . C 3 HOH A 46 346 48 HOH HOH . C 3 HOH A 47 347 49 HOH HOH . C 3 HOH A 48 348 50 HOH HOH . C 3 HOH A 49 349 51 HOH HOH . C 3 HOH A 50 350 52 HOH HOH . C 3 HOH A 51 351 53 HOH HOH . C 3 HOH A 52 352 54 HOH HOH . C 3 HOH A 53 353 55 HOH HOH . C 3 HOH A 54 354 56 HOH HOH . C 3 HOH A 55 355 57 HOH HOH . C 3 HOH A 56 356 58 HOH HOH . C 3 HOH A 57 357 59 HOH HOH . C 3 HOH A 58 358 61 HOH HOH . C 3 HOH A 59 359 62 HOH HOH . C 3 HOH A 60 360 64 HOH HOH . C 3 HOH A 61 361 65 HOH HOH . C 3 HOH A 62 362 66 HOH HOH . C 3 HOH A 63 363 67 HOH HOH . C 3 HOH A 64 364 68 HOH HOH . C 3 HOH A 65 365 69 HOH HOH . C 3 HOH A 66 366 71 HOH HOH . C 3 HOH A 67 367 72 HOH HOH . C 3 HOH A 68 368 73 HOH HOH . C 3 HOH A 69 369 75 HOH HOH . C 3 HOH A 70 370 76 HOH HOH . C 3 HOH A 71 371 77 HOH HOH . C 3 HOH A 72 372 78 HOH HOH . C 3 HOH A 73 373 79 HOH HOH . C 3 HOH A 74 374 82 HOH HOH . C 3 HOH A 75 375 83 HOH HOH . C 3 HOH A 76 376 84 HOH HOH . C 3 HOH A 77 377 85 HOH HOH . C 3 HOH A 78 378 86 HOH HOH . C 3 HOH A 79 379 87 HOH HOH . C 3 HOH A 80 380 88 HOH HOH . C 3 HOH A 81 381 89 HOH HOH . C 3 HOH A 82 382 91 HOH HOH . C 3 HOH A 83 383 93 HOH HOH . C 3 HOH A 84 384 94 HOH HOH . C 3 HOH A 85 385 95 HOH HOH . C 3 HOH A 86 386 96 HOH HOH . C 3 HOH A 87 387 97 HOH HOH . C 3 HOH A 88 388 98 HOH HOH . C 3 HOH A 89 389 99 HOH HOH . C 3 HOH A 90 390 100 HOH HOH . C 3 HOH A 91 391 101 HOH HOH . C 3 HOH A 92 392 102 HOH HOH . C 3 HOH A 93 393 103 HOH HOH . C 3 HOH A 94 394 104 HOH HOH . C 3 HOH A 95 395 105 HOH HOH . C 3 HOH A 96 396 106 HOH HOH . C 3 HOH A 97 397 108 HOH HOH . C 3 HOH A 98 398 109 HOH HOH . C 3 HOH A 99 399 110 HOH HOH . C 3 HOH A 100 400 111 HOH HOH . C 3 HOH A 101 401 112 HOH HOH . C 3 HOH A 102 402 113 HOH HOH . C 3 HOH A 103 403 114 HOH HOH . C 3 HOH A 104 404 115 HOH HOH . C 3 HOH A 105 405 116 HOH HOH . C 3 HOH A 106 406 117 HOH HOH . C 3 HOH A 107 407 118 HOH HOH . C 3 HOH A 108 408 119 HOH HOH . C 3 HOH A 109 409 120 HOH HOH . C 3 HOH A 110 410 121 HOH HOH . C 3 HOH A 111 411 122 HOH HOH . C 3 HOH A 112 412 123 HOH HOH . C 3 HOH A 113 413 124 HOH HOH . C 3 HOH A 114 414 125 HOH HOH . C 3 HOH A 115 415 126 HOH HOH . C 3 HOH A 116 416 127 HOH HOH . C 3 HOH A 117 417 128 HOH HOH . C 3 HOH A 118 418 129 HOH HOH . C 3 HOH A 119 419 130 HOH HOH . C 3 HOH A 120 420 131 HOH HOH . C 3 HOH A 121 421 132 HOH HOH . C 3 HOH A 122 422 134 HOH HOH . C 3 HOH A 123 423 136 HOH HOH . C 3 HOH A 124 424 137 HOH HOH . C 3 HOH A 125 425 138 HOH HOH . C 3 HOH A 126 426 139 HOH HOH . C 3 HOH A 127 427 140 HOH HOH . C 3 HOH A 128 428 141 HOH HOH . C 3 HOH A 129 429 142 HOH HOH . C 3 HOH A 130 430 143 HOH HOH . C 3 HOH A 131 431 144 HOH HOH . C 3 HOH A 132 432 146 HOH HOH . C 3 HOH A 133 433 148 HOH HOH . C 3 HOH A 134 434 149 HOH HOH . C 3 HOH A 135 435 150 HOH HOH . C 3 HOH A 136 436 153 HOH HOH . C 3 HOH A 137 437 154 HOH HOH . C 3 HOH A 138 438 155 HOH HOH . C 3 HOH A 139 439 156 HOH HOH . C 3 HOH A 140 440 158 HOH HOH . C 3 HOH A 141 441 159 HOH HOH . C 3 HOH A 142 442 160 HOH HOH . C 3 HOH A 143 443 161 HOH HOH . C 3 HOH A 144 444 162 HOH HOH . C 3 HOH A 145 445 163 HOH HOH . C 3 HOH A 146 446 164 HOH HOH . C 3 HOH A 147 447 165 HOH HOH . C 3 HOH A 148 448 166 HOH HOH . C 3 HOH A 149 449 167 HOH HOH . C 3 HOH A 150 450 168 HOH HOH . C 3 HOH A 151 451 169 HOH HOH . C 3 HOH A 152 452 171 HOH HOH . C 3 HOH A 153 453 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PZZ . . . B 2 -21.93 6.638 8.149 1 48.61 ? C2 PZZ 201 A 1 HETATM 2 C C3 PZZ . . . B 2 -21.721 7.705 7.211 1 45.02 ? C3 PZZ 201 A 1 HETATM 3 N N1 PZZ . . . B 2 -21.75 5.415 7.489 1 50.91 ? N1 PZZ 201 A 1 HETATM 4 C C4 PZZ . . . B 2 -21.102 7.669 4.711 1 44.95 ? C4 PZZ 201 A 1 HETATM 5 C C5 PZZ . . . B 2 -20.813 6.804 3.661 1 42.41 ? C5 PZZ 201 A 1 HETATM 6 C C6 PZZ . . . B 2 -20.844 5.41 3.772 1 36.94 ? C6 PZZ 201 A 1 HETATM 7 C C7 PZZ . . . B 2 -21.136 4.764 4.955 1 43.12 ? C7 PZZ 201 A 1 HETATM 8 C C8 PZZ . . . B 2 -21.403 7.07 5.925 1 41.83 ? C8 PZZ 201 A 1 HETATM 9 C C9 PZZ . . . B 2 -21.45 5.611 6.142 1 45.9 ? C9 PZZ 201 A 1 HETATM 10 C C10 PZZ . . . B 2 -21.779 9.227 7.271 1 44.18 ? C10 PZZ 201 A 1 HETATM 11 N N11 PZZ . . . B 2 -21.48 9.916 8.533 1 45.58 ? N11 PZZ 201 A 1 HETATM 12 C C12 PZZ . . . B 2 -21.583 11.349 8.201 1 46.05 ? C12 PZZ 201 A 1 HETATM 13 C C13 PZZ . . . B 2 -22.388 9.639 9.677 1 49.37 ? C13 PZZ 201 A 1 HETATM 14 C C14 PZZ . . . B 2 -21.093 3.234 5.04 1 41.56 ? C14 PZZ 201 A 1 HETATM 15 C C15 PZZ . . . B 2 -20.982 2.518 3.678 1 36.19 ? C15 PZZ 201 A 1 HETATM 16 C C16 PZZ . . . B 2 -19.61 1.856 3.444 1 39.29 ? C16 PZZ 201 A 1 HETATM 17 O O17 PZZ . . . B 2 -19.127 0.924 4.487 1 35.09 ? O17 PZZ 201 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 17 #