data_4QGV # _model_server_result.job_id uggbU8EMfI95j9AiCRfVaw _model_server_result.datetime_utc '2024-10-19 11:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4QGV # _exptl.entry_id 4QGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.365 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.53 _cell.angle_beta 106.04 _cell.angle_gamma 90.87 _cell.entry_id 4QGV _cell.length_a 34.785 _cell.length_b 37.34 _cell.length_c 60.091 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 B,C,E 3 1 A,D 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -34.785 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 132 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 132 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id LMC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LMC _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.261 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H21 N O' _chem_comp.formula_weight 267.365 _chem_comp.id LMC _chem_comp.mon_nstd_flag . _chem_comp.name (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2E,4E,6Z)-3-methyl-6-(1,3,3-trimethylindolin-2-ylidene)hexa-2,4-dienal # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 LMC sing 173 n n C18 O1 LMC doub 174 n n C18 H18 LMC sing 175 n n C17 H17 LMC sing 176 n n C16 C17 LMC doub 177 e n C16 C15 LMC sing 178 n n C20 C16 LMC sing 179 n n C20 H20 LMC sing 180 n n C20 H20A LMC sing 181 n n C15 H15 LMC sing 182 n n C14 C15 LMC doub 183 n n C14 C13 LMC sing 184 e n C14 H14 LMC sing 185 n n C13 H13 LMC sing 186 n n C8 C13 LMC doub 187 n n C8 N9 LMC sing 188 e n C7 C8 LMC sing 189 n n C7 C2 LMC sing 190 n n C11 C7 LMC sing 191 n n C11 H11 LMC sing 192 n n C11 H11A LMC sing 193 n n C11 H11B LMC sing 194 n n C10 C7 LMC sing 195 n n C10 H10 LMC sing 196 n n C10 H10A LMC sing 197 n n C10 H10B LMC sing 198 n n C2 C3 LMC sing 199 n y C3 C4 LMC doub 200 n y C3 N9 LMC sing 201 n n N9 C12 LMC sing 202 n n C12 H12 LMC sing 203 n n C12 H12A LMC sing 204 n n C12 H12B LMC sing 205 n n C1 C2 LMC doub 206 n y C1 C6 LMC sing 207 n y C1 H1 LMC sing 208 n n C6 C5 LMC doub 209 n y C6 H6 LMC sing 210 n n C5 C4 LMC sing 211 n y C5 H5 LMC sing 212 n n C4 H4 LMC sing 213 n n C20 H21 LMC sing 214 n n # _atom_sites.entry_id 4QGV _atom_sites.fract_transf_matrix[1][1] 0.028748 _atom_sites.fract_transf_matrix[1][2] 0.000437 _atom_sites.fract_transf_matrix[1][3] 0.008694 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026784 _atom_sites.fract_transf_matrix[2][3] 0.007372 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LMC A 1 201 139 LMC LMC . D 3 HOH B 1 201 6 HOH HOH . D 3 HOH B 2 202 7 HOH HOH . D 3 HOH B 3 203 9 HOH HOH . D 3 HOH B 4 204 10 HOH HOH . D 3 HOH B 5 205 12 HOH HOH . D 3 HOH B 6 206 16 HOH HOH . D 3 HOH B 7 207 17 HOH HOH . D 3 HOH B 8 208 18 HOH HOH . D 3 HOH B 9 209 19 HOH HOH . D 3 HOH B 10 210 21 HOH HOH . D 3 HOH B 11 211 23 HOH HOH . D 3 HOH B 12 212 26 HOH HOH . D 3 HOH B 13 213 27 HOH HOH . D 3 HOH B 14 214 29 HOH HOH . D 3 HOH B 15 215 33 HOH HOH . D 3 HOH B 16 216 35 HOH HOH . D 3 HOH B 17 217 37 HOH HOH . D 3 HOH B 18 218 41 HOH HOH . D 3 HOH B 19 219 44 HOH HOH . D 3 HOH B 20 220 52 HOH HOH . D 3 HOH B 21 221 53 HOH HOH . D 3 HOH B 22 222 54 HOH HOH . D 3 HOH B 23 223 56 HOH HOH . D 3 HOH B 24 224 57 HOH HOH . D 3 HOH B 25 225 58 HOH HOH . D 3 HOH B 26 226 61 HOH HOH . D 3 HOH B 27 227 64 HOH HOH . D 3 HOH B 28 228 65 HOH HOH . D 3 HOH B 29 229 66 HOH HOH . D 3 HOH B 30 230 70 HOH HOH . D 3 HOH B 31 231 74 HOH HOH . D 3 HOH B 32 232 77 HOH HOH . D 3 HOH B 33 233 80 HOH HOH . D 3 HOH B 34 234 84 HOH HOH . D 3 HOH B 35 235 85 HOH HOH . D 3 HOH B 36 236 86 HOH HOH . D 3 HOH B 37 237 87 HOH HOH . D 3 HOH B 38 238 89 HOH HOH . D 3 HOH B 39 239 90 HOH HOH . D 3 HOH B 40 240 91 HOH HOH . D 3 HOH B 41 241 96 HOH HOH . D 3 HOH B 42 242 99 HOH HOH . D 3 HOH B 43 243 101 HOH HOH . D 3 HOH B 44 244 102 HOH HOH . D 3 HOH B 45 245 103 HOH HOH . D 3 HOH B 46 246 105 HOH HOH . D 3 HOH B 47 247 106 HOH HOH . D 3 HOH B 48 248 112 HOH HOH . D 3 HOH B 49 249 113 HOH HOH . D 3 HOH B 50 250 114 HOH HOH . D 3 HOH B 51 251 117 HOH HOH . D 3 HOH B 52 252 118 HOH HOH . D 3 HOH B 53 253 119 HOH HOH . D 3 HOH B 54 254 121 HOH HOH . D 3 HOH B 55 255 127 HOH HOH . D 3 HOH B 56 256 128 HOH HOH . D 3 HOH B 57 257 132 HOH HOH . D 3 HOH B 58 258 133 HOH HOH . D 3 HOH B 59 259 136 HOH HOH . D 3 HOH B 60 260 138 HOH HOH . D 3 HOH B 61 261 140 HOH HOH . D 3 HOH B 62 262 141 HOH HOH . D 3 HOH B 63 263 142 HOH HOH . D 3 HOH B 64 264 144 HOH HOH . D 3 HOH B 65 265 145 HOH HOH . D 3 HOH B 66 266 147 HOH HOH . D 3 HOH B 67 267 148 HOH HOH . D 3 HOH B 68 268 151 HOH HOH . D 3 HOH B 69 269 154 HOH HOH . D 3 HOH B 70 270 157 HOH HOH . D 3 HOH B 71 271 160 HOH HOH . D 3 HOH B 72 272 161 HOH HOH . D 3 HOH B 73 273 163 HOH HOH . D 3 HOH B 74 274 165 HOH HOH . D 3 HOH B 75 275 170 HOH HOH . D 3 HOH B 76 276 173 HOH HOH . D 3 HOH B 77 277 174 HOH HOH . D 3 HOH B 78 278 177 HOH HOH . D 3 HOH B 79 279 182 HOH HOH . D 3 HOH B 80 280 183 HOH HOH . D 3 HOH B 81 281 188 HOH HOH . D 3 HOH B 82 282 189 HOH HOH . D 3 HOH B 83 283 190 HOH HOH . D 3 HOH B 84 284 191 HOH HOH . D 3 HOH B 85 285 192 HOH HOH . D 3 HOH B 86 286 193 HOH HOH . D 3 HOH B 87 287 194 HOH HOH . D 3 HOH B 88 288 195 HOH HOH . D 3 HOH B 89 289 196 HOH HOH . D 3 HOH B 90 290 197 HOH HOH . D 3 HOH B 91 291 198 HOH HOH . D 3 HOH B 92 292 199 HOH HOH . D 3 HOH B 93 293 200 HOH HOH . D 3 HOH B 94 294 201 HOH HOH . D 3 HOH B 95 295 202 HOH HOH . D 3 HOH B 96 296 203 HOH HOH . D 3 HOH B 97 297 209 HOH HOH . D 3 HOH B 98 298 211 HOH HOH . D 3 HOH B 99 299 212 HOH HOH . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 2 HOH HOH . E 3 HOH A 3 303 3 HOH HOH . E 3 HOH A 4 304 4 HOH HOH . E 3 HOH A 5 305 5 HOH HOH . E 3 HOH A 6 306 8 HOH HOH . E 3 HOH A 7 307 11 HOH HOH . E 3 HOH A 8 308 13 HOH HOH . E 3 HOH A 9 309 14 HOH HOH . E 3 HOH A 10 310 15 HOH HOH . E 3 HOH A 11 311 20 HOH HOH . E 3 HOH A 12 312 22 HOH HOH . E 3 HOH A 13 313 24 HOH HOH . E 3 HOH A 14 314 25 HOH HOH . E 3 HOH A 15 315 28 HOH HOH . E 3 HOH A 16 316 30 HOH HOH . E 3 HOH A 17 317 31 HOH HOH . E 3 HOH A 18 318 32 HOH HOH . E 3 HOH A 19 319 34 HOH HOH . E 3 HOH A 20 320 36 HOH HOH . E 3 HOH A 21 321 38 HOH HOH . E 3 HOH A 22 322 39 HOH HOH . E 3 HOH A 23 323 40 HOH HOH . E 3 HOH A 24 324 42 HOH HOH . E 3 HOH A 25 325 43 HOH HOH . E 3 HOH A 26 326 45 HOH HOH . E 3 HOH A 27 327 46 HOH HOH . E 3 HOH A 28 328 47 HOH HOH . E 3 HOH A 29 329 48 HOH HOH . E 3 HOH A 30 330 49 HOH HOH . E 3 HOH A 31 331 50 HOH HOH . E 3 HOH A 32 332 51 HOH HOH . E 3 HOH A 33 333 55 HOH HOH . E 3 HOH A 34 334 59 HOH HOH . E 3 HOH A 35 335 60 HOH HOH . E 3 HOH A 36 336 62 HOH HOH . E 3 HOH A 37 337 63 HOH HOH . E 3 HOH A 38 338 67 HOH HOH . E 3 HOH A 39 339 68 HOH HOH . E 3 HOH A 40 340 69 HOH HOH . E 3 HOH A 41 341 71 HOH HOH . E 3 HOH A 42 342 72 HOH HOH . E 3 HOH A 43 343 73 HOH HOH . E 3 HOH A 44 344 75 HOH HOH . E 3 HOH A 45 345 76 HOH HOH . E 3 HOH A 46 346 78 HOH HOH . E 3 HOH A 47 347 79 HOH HOH . E 3 HOH A 48 348 81 HOH HOH . E 3 HOH A 49 349 82 HOH HOH . E 3 HOH A 50 350 83 HOH HOH . E 3 HOH A 51 351 88 HOH HOH . E 3 HOH A 52 352 92 HOH HOH . E 3 HOH A 53 353 93 HOH HOH . E 3 HOH A 54 354 94 HOH HOH . E 3 HOH A 55 355 95 HOH HOH . E 3 HOH A 56 356 97 HOH HOH . E 3 HOH A 57 357 98 HOH HOH . E 3 HOH A 58 358 100 HOH HOH . E 3 HOH A 59 359 104 HOH HOH . E 3 HOH A 60 360 107 HOH HOH . E 3 HOH A 61 361 108 HOH HOH . E 3 HOH A 62 362 109 HOH HOH . E 3 HOH A 63 363 110 HOH HOH . E 3 HOH A 64 364 111 HOH HOH . E 3 HOH A 65 365 115 HOH HOH . E 3 HOH A 66 366 116 HOH HOH . E 3 HOH A 67 367 120 HOH HOH . E 3 HOH A 68 368 122 HOH HOH . E 3 HOH A 69 369 123 HOH HOH . E 3 HOH A 70 370 124 HOH HOH . E 3 HOH A 71 371 125 HOH HOH . E 3 HOH A 72 372 126 HOH HOH . E 3 HOH A 73 373 129 HOH HOH . E 3 HOH A 74 374 130 HOH HOH . E 3 HOH A 75 375 131 HOH HOH . E 3 HOH A 76 376 134 HOH HOH . E 3 HOH A 77 377 135 HOH HOH . E 3 HOH A 78 378 137 HOH HOH . E 3 HOH A 79 379 139 HOH HOH . E 3 HOH A 80 380 143 HOH HOH . E 3 HOH A 81 381 146 HOH HOH . E 3 HOH A 82 382 149 HOH HOH . E 3 HOH A 83 383 150 HOH HOH . E 3 HOH A 84 384 152 HOH HOH . E 3 HOH A 85 385 153 HOH HOH . E 3 HOH A 86 386 155 HOH HOH . E 3 HOH A 87 387 156 HOH HOH . E 3 HOH A 88 388 158 HOH HOH . E 3 HOH A 89 389 159 HOH HOH . E 3 HOH A 90 390 162 HOH HOH . E 3 HOH A 91 391 164 HOH HOH . E 3 HOH A 92 392 166 HOH HOH . E 3 HOH A 93 393 167 HOH HOH . E 3 HOH A 94 394 168 HOH HOH . E 3 HOH A 95 395 169 HOH HOH . E 3 HOH A 96 396 171 HOH HOH . E 3 HOH A 97 397 172 HOH HOH . E 3 HOH A 98 398 175 HOH HOH . E 3 HOH A 99 399 176 HOH HOH . E 3 HOH A 100 400 178 HOH HOH . E 3 HOH A 101 401 179 HOH HOH . E 3 HOH A 102 402 180 HOH HOH . E 3 HOH A 103 403 181 HOH HOH . E 3 HOH A 104 404 184 HOH HOH . E 3 HOH A 105 405 185 HOH HOH . E 3 HOH A 106 406 186 HOH HOH . E 3 HOH A 107 407 187 HOH HOH . E 3 HOH A 108 408 204 HOH HOH . E 3 HOH A 109 409 205 HOH HOH . E 3 HOH A 110 410 206 HOH HOH . E 3 HOH A 111 411 207 HOH HOH . E 3 HOH A 112 412 208 HOH HOH . E 3 HOH A 113 413 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 LMC . . . C 2 -24.522 -10.225 18.629 1 33.6 ? C18 LMC 201 A 1 HETATM 2 C C17 LMC . . . C 2 -23.384 -10.422 19.522 1 35.99 ? C17 LMC 201 A 1 HETATM 3 C C16 LMC . . . C 2 -22.169 -9.991 19.148 1 41.22 ? C16 LMC 201 A 1 HETATM 4 C C20 LMC . . . C 2 -21.995 -9.299 17.823 1 37.95 ? C20 LMC 201 A 1 HETATM 5 C C15 LMC . . . C 2 -21.021 -10.197 20.056 1 46.77 ? C15 LMC 201 A 1 HETATM 6 C C14 LMC . . . C 2 -20.714 -11.372 20.4 1 42.47 ? C14 LMC 201 A 1 HETATM 7 C C13 LMC . . . C 2 -19.451 -11.662 21.114 1 41.8 ? C13 LMC 201 A 1 HETATM 8 C C8 LMC . . . C 2 -19.331 -12.69 21.838 1 33.16 ? C8 LMC 201 A 1 HETATM 9 C C7 LMC . . . C 2 -18.31 -12.732 22.934 1 39.28 ? C7 LMC 201 A 1 HETATM 10 C C11 LMC . . . C 2 -16.912 -12.622 22.326 1 44.06 ? C11 LMC 201 A 1 HETATM 11 C C10 LMC . . . C 2 -18.594 -11.677 23.999 1 32.03 ? C10 LMC 201 A 1 HETATM 12 C C2 LMC . . . C 2 -18.618 -14.11 23.387 1 33.91 ? C2 LMC 201 A 1 HETATM 13 C C3 LMC . . . C 2 -19.695 -14.728 22.582 1 34.45 ? C3 LMC 201 A 1 HETATM 14 N N9 LMC . . . C 2 -20.071 -13.812 21.654 1 35.49 ? N9 LMC 201 A 1 HETATM 15 C C12 LMC . . . C 2 -21.13 -14.001 20.623 1 33.24 ? C12 LMC 201 A 1 HETATM 16 C C1 LMC . . . C 2 -18.044 -14.728 24.358 1 32.23 ? C1 LMC 201 A 1 HETATM 17 C C6 LMC . . . C 2 -18.393 -15.935 24.663 1 30.37 ? C6 LMC 201 A 1 HETATM 18 C C5 LMC . . . C 2 -19.398 -16.622 23.973 1 30.93 ? C5 LMC 201 A 1 HETATM 19 C C4 LMC . . . C 2 -20.069 -16.023 22.909 1 33.49 ? C4 LMC 201 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #