data_4QH5 # _model_server_result.job_id JF_EWqisNs8j-6UggHtp3Q _model_server_result.datetime_utc '2024-11-28 04:11:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":402}' # _entry.id 4QH5 # _exptl.entry_id 4QH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.72 _cell.angle_gamma 90 _cell.entry_id 4QH5 _cell.length_a 181.878 _cell.length_b 134.423 _cell.length_c 160.003 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 O N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ILE 70 B ILE 71 1_555 K NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 C O PRO 67 C PRO 68 1_555 O NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc3 C O ILE 70 C ILE 71 1_555 O NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc4 D O ILE 70 D ILE 71 1_555 R NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4QH5 _atom_sites.fract_transf_matrix[1][1] 0.005498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001241 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 401 4 LMT LMT . G 2 LMT A 1 402 5 LMT LMT . H 3 CL A 1 403 1 CL CL . I 2 LMT B 1 401 6 LMT LMT . J 3 CL B 1 402 1 CL CL . K 4 NA B 1 403 1 NA NA . L 4 NA C 1 401 1 NA NA . M 2 LMT C 1 402 1 LMT LMT . N 3 CL C 1 403 1 CL CL . O 4 NA C 1 404 1 NA NA . P 5 PLC C 1 405 402 PLC PLC . Q 2 LMT D 1 401 2 LMT LMT . R 4 NA D 1 402 1 NA NA . S 3 CL D 1 403 1 CL CL . T 2 LMT E 1 401 3 LMT LMT . U 3 CL E 1 402 1 CL CL . V 5 PLC E 1 403 402 PLC PLC . W 6 HOH A 1 501 4 HOH HOH . W 6 HOH A 2 502 9 HOH HOH . W 6 HOH A 3 503 18 HOH HOH . W 6 HOH A 4 504 21 HOH HOH . W 6 HOH A 5 505 28 HOH HOH . W 6 HOH A 6 506 37 HOH HOH . W 6 HOH A 7 507 38 HOH HOH . W 6 HOH A 8 508 40 HOH HOH . W 6 HOH A 9 509 4 HOH HOH . W 6 HOH A 10 510 1 HOH HOH . W 6 HOH A 11 511 4 HOH HOH . X 6 HOH B 1 501 17 HOH HOH . X 6 HOH B 2 502 24 HOH HOH . X 6 HOH B 3 503 32 HOH HOH . X 6 HOH B 4 504 39 HOH HOH . X 6 HOH B 5 505 41 HOH HOH . X 6 HOH B 6 506 43 HOH HOH . X 6 HOH B 7 507 47 HOH HOH . X 6 HOH B 8 508 50 HOH HOH . X 6 HOH B 9 509 3 HOH HOH . X 6 HOH B 10 510 21 HOH HOH . X 6 HOH B 11 511 8 HOH HOH . Y 6 HOH C 1 501 1 HOH HOH . Y 6 HOH C 2 502 5 HOH HOH . Y 6 HOH C 3 503 33 HOH HOH . Y 6 HOH C 4 504 42 HOH HOH . Y 6 HOH C 5 505 49 HOH HOH . Y 6 HOH C 6 506 10 HOH HOH . Y 6 HOH C 7 507 11 HOH HOH . Y 6 HOH C 8 508 1 HOH HOH . Y 6 HOH C 9 509 3 HOH HOH . Y 6 HOH C 10 510 7 HOH HOH . Z 6 HOH D 1 501 2 HOH HOH . Z 6 HOH D 2 502 3 HOH HOH . Z 6 HOH D 3 503 6 HOH HOH . Z 6 HOH D 4 504 7 HOH HOH . Z 6 HOH D 5 505 14 HOH HOH . Z 6 HOH D 6 506 15 HOH HOH . Z 6 HOH D 7 507 25 HOH HOH . Z 6 HOH D 8 508 26 HOH HOH . Z 6 HOH D 9 509 30 HOH HOH . Z 6 HOH D 10 510 35 HOH HOH . Z 6 HOH D 11 511 48 HOH HOH . Z 6 HOH D 12 512 14 HOH HOH . Z 6 HOH D 13 513 19 HOH HOH . Z 6 HOH D 14 514 1 HOH HOH . Z 6 HOH D 15 515 2 HOH HOH . Z 6 HOH D 16 516 1 HOH HOH . Z 6 HOH D 17 517 5 HOH HOH . Z 6 HOH D 18 518 10 HOH HOH . Z 6 HOH D 19 519 11 HOH HOH . AA 6 HOH E 1 501 8 HOH HOH . AA 6 HOH E 2 502 22 HOH HOH . AA 6 HOH E 3 503 36 HOH HOH . AA 6 HOH E 4 504 13 HOH HOH . AA 6 HOH E 5 505 6 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 4 _atom_site.Cartn_x 42.487 _atom_site.Cartn_y -37.065 _atom_site.Cartn_z -10.774 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 120.4 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #