data_4QH5
#
_model_server_result.job_id            eaAzQohDzs9A2iV_d9_Y_A 
_model_server_result.datetime_utc      '2024-11-13 06:04:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":405}' 
#
_entry.id    4QH5 
#
_exptl.entry_id    4QH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.72 
_cell.angle_gamma         90 
_cell.entry_id            4QH5 
_cell.length_a            181.878 
_cell.length_b            134.423 
_cell.length_c            160.003 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 P N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O ILE 70 B ILE 71 1_555 K NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 C O PRO 67 C PRO 68 1_555 O NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
metalc ? metalc3 C O ILE 70 C ILE 71 1_555 O NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc4 D O ILE 70 D ILE 71 1_555 R NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 342 n n 
C1 O3P PLC sing 343 n n 
C1 H11 PLC sing 344 n n 
C1 H12 PLC sing 345 n n 
C2 C3 PLC sing 346 n n 
C2 O2 PLC sing 347 n n 
C2 H2 PLC sing 348 n n 
C3 O3 PLC sing 349 n n 
C3 H31 PLC sing 350 n n 
C3 H32 PLC sing 351 n n 
C4 C5 PLC sing 352 n n 
C4 O4P PLC sing 353 n n 
C4 H41 PLC sing 354 n n 
C4 H42 PLC sing 355 n n 
C5 N PLC sing 356 n n 
C5 H51 PLC sing 357 n n 
C5 H52 PLC sing 358 n n 
C6 N PLC sing 359 n n 
C6 H61 PLC sing 360 n n 
C6 H62 PLC sing 361 n n 
C6 H63 PLC sing 362 n n 
C7 N PLC sing 363 n n 
C7 H71 PLC sing 364 n n 
C7 H72 PLC sing 365 n n 
C7 H73 PLC sing 366 n n 
C8 N PLC sing 367 n n 
C8 H81 PLC sing 368 n n 
C8 H82 PLC sing 369 n n 
C8 H83 PLC sing 370 n n 
C' C1' PLC sing 371 n n 
C' O' PLC doub 372 n n 
C' O2 PLC sing 373 n n 
C1' C2' PLC sing 374 n n 
C1' "H1'1" PLC sing 375 n n 
C1' "H1'2" PLC sing 376 n n 
C2' C3' PLC sing 377 n n 
C2' "H2'1" PLC sing 378 n n 
C2' "H2'2" PLC sing 379 n n 
C3' C4' PLC sing 380 n n 
C3' "H3'1" PLC sing 381 n n 
C3' "H3'2" PLC sing 382 n n 
C4' C5' PLC sing 383 n n 
C4' "H4'1" PLC sing 384 n n 
C4' "H4'2" PLC sing 385 n n 
C5' C6' PLC sing 386 n n 
C5' "H5'1" PLC sing 387 n n 
C5' "H5'2" PLC sing 388 n n 
C6' C7' PLC sing 389 n n 
C6' "H6'1" PLC sing 390 n n 
C6' "H6'2" PLC sing 391 n n 
C7' C8' PLC sing 392 n n 
C7' "H7'1" PLC sing 393 n n 
C7' "H7'2" PLC sing 394 n n 
C8' C9' PLC sing 395 n n 
C8' "H8'1" PLC sing 396 n n 
C8' "H8'2" PLC sing 397 n n 
C9' CA' PLC sing 398 n n 
C9' "H9'1" PLC sing 399 n n 
C9' "H9'2" PLC sing 400 n n 
CA' CB' PLC sing 401 n n 
CA' "HT'1" PLC sing 402 n n 
CA' "HT'2" PLC sing 403 n n 
CB' "HE'1" PLC sing 404 n n 
CB' "HE'2" PLC sing 405 n n 
CB' "HE'3" PLC sing 406 n n 
CB C1B PLC sing 407 n n 
CB OB PLC doub 408 n n 
CB O3 PLC sing 409 n n 
C1B C2B PLC sing 410 n n 
C1B H1A1 PLC sing 411 n n 
C1B H1A2 PLC sing 412 n n 
C2B C3B PLC sing 413 n n 
C2B H2A1 PLC sing 414 n n 
C2B H2A2 PLC sing 415 n n 
C3B C4B PLC sing 416 n n 
C3B H3A1 PLC sing 417 n n 
C3B H3A2 PLC sing 418 n n 
C4B C5B PLC sing 419 n n 
C4B H4A1 PLC sing 420 n n 
C4B H4A2 PLC sing 421 n n 
C5B C6B PLC sing 422 n n 
C5B H5A1 PLC sing 423 n n 
C5B H5A2 PLC sing 424 n n 
C6B C7B PLC sing 425 n n 
C6B H6A1 PLC sing 426 n n 
C6B H6A2 PLC sing 427 n n 
C7B C8B PLC sing 428 n n 
C7B H7A1 PLC sing 429 n n 
C7B H7A2 PLC sing 430 n n 
C8B C9B PLC sing 431 n n 
C8B H8A1 PLC sing 432 n n 
C8B H8A2 PLC sing 433 n n 
C9B CAA PLC sing 434 n n 
C9B H9A1 PLC sing 435 n n 
C9B H9A2 PLC sing 436 n n 
CAA CBA PLC sing 437 n n 
CAA HTA1 PLC sing 438 n n 
CAA HTA2 PLC sing 439 n n 
CBA HEA1 PLC sing 440 n n 
CBA HEA2 PLC sing 441 n n 
CBA HEA3 PLC sing 442 n n 
O1P P PLC doub 443 n n 
O2P P PLC sing 444 n n 
O2P HOP2 PLC sing 445 n n 
O3P P PLC sing 446 n n 
O4P P PLC sing 447 n n 
#
_atom_sites.entry_id                     4QH5 
_atom_sites.fract_transf_matrix[1][1]    0.005498 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001241 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LMT A 1 401 4 LMT LMT . 
G 2 LMT A 1 402 5 LMT LMT . 
H 3 CL A 1 403 1 CL CL . 
I 2 LMT B 1 401 6 LMT LMT . 
J 3 CL B 1 402 1 CL CL . 
K 4 NA B 1 403 1 NA NA . 
L 4 NA C 1 401 1 NA NA . 
M 2 LMT C 1 402 1 LMT LMT . 
N 3 CL C 1 403 1 CL CL . 
O 4 NA C 1 404 1 NA NA . 
P 5 PLC C 1 405 402 PLC PLC . 
Q 2 LMT D 1 401 2 LMT LMT . 
R 4 NA D 1 402 1 NA NA . 
S 3 CL D 1 403 1 CL CL . 
T 2 LMT E 1 401 3 LMT LMT . 
U 3 CL E 1 402 1 CL CL . 
V 5 PLC E 1 403 402 PLC PLC . 
W 6 HOH A 1 501 4 HOH HOH . 
W 6 HOH A 2 502 9 HOH HOH . 
W 6 HOH A 3 503 18 HOH HOH . 
W 6 HOH A 4 504 21 HOH HOH . 
W 6 HOH A 5 505 28 HOH HOH . 
W 6 HOH A 6 506 37 HOH HOH . 
W 6 HOH A 7 507 38 HOH HOH . 
W 6 HOH A 8 508 40 HOH HOH . 
W 6 HOH A 9 509 4 HOH HOH . 
W 6 HOH A 10 510 1 HOH HOH . 
W 6 HOH A 11 511 4 HOH HOH . 
X 6 HOH B 1 501 17 HOH HOH . 
X 6 HOH B 2 502 24 HOH HOH . 
X 6 HOH B 3 503 32 HOH HOH . 
X 6 HOH B 4 504 39 HOH HOH . 
X 6 HOH B 5 505 41 HOH HOH . 
X 6 HOH B 6 506 43 HOH HOH . 
X 6 HOH B 7 507 47 HOH HOH . 
X 6 HOH B 8 508 50 HOH HOH . 
X 6 HOH B 9 509 3 HOH HOH . 
X 6 HOH B 10 510 21 HOH HOH . 
X 6 HOH B 11 511 8 HOH HOH . 
Y 6 HOH C 1 501 1 HOH HOH . 
Y 6 HOH C 2 502 5 HOH HOH . 
Y 6 HOH C 3 503 33 HOH HOH . 
Y 6 HOH C 4 504 42 HOH HOH . 
Y 6 HOH C 5 505 49 HOH HOH . 
Y 6 HOH C 6 506 10 HOH HOH . 
Y 6 HOH C 7 507 11 HOH HOH . 
Y 6 HOH C 8 508 1 HOH HOH . 
Y 6 HOH C 9 509 3 HOH HOH . 
Y 6 HOH C 10 510 7 HOH HOH . 
Z 6 HOH D 1 501 2 HOH HOH . 
Z 6 HOH D 2 502 3 HOH HOH . 
Z 6 HOH D 3 503 6 HOH HOH . 
Z 6 HOH D 4 504 7 HOH HOH . 
Z 6 HOH D 5 505 14 HOH HOH . 
Z 6 HOH D 6 506 15 HOH HOH . 
Z 6 HOH D 7 507 25 HOH HOH . 
Z 6 HOH D 8 508 26 HOH HOH . 
Z 6 HOH D 9 509 30 HOH HOH . 
Z 6 HOH D 10 510 35 HOH HOH . 
Z 6 HOH D 11 511 48 HOH HOH . 
Z 6 HOH D 12 512 14 HOH HOH . 
Z 6 HOH D 13 513 19 HOH HOH . 
Z 6 HOH D 14 514 1 HOH HOH . 
Z 6 HOH D 15 515 2 HOH HOH . 
Z 6 HOH D 16 516 1 HOH HOH . 
Z 6 HOH D 17 517 5 HOH HOH . 
Z 6 HOH D 18 518 10 HOH HOH . 
Z 6 HOH D 19 519 11 HOH HOH . 
AA 6 HOH E 1 501 8 HOH HOH . 
AA 6 HOH E 2 502 22 HOH HOH . 
AA 6 HOH E 3 503 36 HOH HOH . 
AA 6 HOH E 4 504 13 HOH HOH . 
AA 6 HOH E 5 505 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLC . . . P 5 50.737 -58.004 37.918 1 152.16 ? C1 PLC 405 C 1 
HETATM 2 C C2 PLC . . . P 5 51.33 -57.028 38.989 1 144.34 ? C2 PLC 405 C 1 
HETATM 3 C C3 PLC . . . P 5 51.242 -57.435 40.472 1 140.46 ? C3 PLC 405 C 1 
HETATM 4 C C4 PLC . . . P 5 46.464 -60.884 37.761 1 163.27 ? C4 PLC 405 C 1 
HETATM 5 C C5 PLC . . . P 5 45.281 -61.042 38.784 1 160.9 ? C5 PLC 405 C 1 
HETATM 6 C C6 PLC . . . P 5 44.742 -63.613 38.754 1 158.37 ? C6 PLC 405 C 1 
HETATM 7 C C7 PLC . . . P 5 43.171 -62.057 39.771 1 157.64 ? C7 PLC 405 C 1 
HETATM 8 C C8 PLC . . . P 5 43.404 -62.073 37.33 1 156.44 ? C8 PLC 405 C 1 
HETATM 9 C C' PLC . . . P 5 53.876 -57.405 38.61 1 127.44 ? C' PLC 405 C 1 
HETATM 10 C C1' PLC . . . P 5 54.842 -57.252 39.78 1 117.84 ? C1' PLC 405 C 1 
HETATM 11 C C2' PLC . . . P 5 55.999 -56.307 39.415 1 109.05 ? C2' PLC 405 C 1 
HETATM 12 C C3' PLC . . . P 5 55.893 -54.959 40.153 1 103.21 ? C3' PLC 405 C 1 
HETATM 13 C C4' PLC . . . P 5 56.615 -54.994 41.511 1 98.78 ? C4' PLC 405 C 1 
HETATM 14 C C5' PLC . . . P 5 56.858 -53.579 42.087 1 95.84 ? C5' PLC 405 C 1 
HETATM 15 C C6' PLC . . . P 5 57.783 -53.663 43.334 1 92.95 ? C6' PLC 405 C 1 
HETATM 16 C C7' PLC . . . P 5 58.13 -52.29 43.951 1 89.84 ? C7' PLC 405 C 1 
HETATM 17 C CB PLC . . . P 5 51.1 -56.118 42.491 1 134.37 ? CB PLC 405 C 1 
HETATM 18 C C1B PLC . . . P 5 51.728 -55 43.303 1 123.97 ? C1B PLC 405 C 1 
HETATM 19 C C2B PLC . . . P 5 53.141 -54.593 42.837 1 114.39 ? C2B PLC 405 C 1 
HETATM 20 C C3B PLC . . . P 5 53.974 -54.039 44.004 1 106.98 ? C3B PLC 405 C 1 
HETATM 21 C C4B PLC . . . P 5 53.442 -52.733 44.601 1 101.58 ? C4B PLC 405 C 1 
HETATM 22 C C5B PLC . . . P 5 54.469 -52.161 45.591 1 98.07 ? C5B PLC 405 C 1 
HETATM 23 C C6B PLC . . . P 5 54.01 -52.253 47.047 1 93.48 ? C6B PLC 405 C 1 
HETATM 24 C C7B PLC . . . P 5 54.875 -51.335 47.908 1 91.01 ? C7B PLC 405 C 1 
HETATM 25 O O' PLC . . . P 5 54.029 -58.103 37.609 1 126.19 ? O' PLC 405 C 1 
HETATM 26 O OB PLC . . . P 5 50.09 -56.748 42.816 1 138.12 ? OB PLC 405 C 1 
HETATM 27 O O2 PLC . . . P 5 52.727 -56.587 38.724 1 137.7 ? O2 PLC 405 C 1 
HETATM 28 O O3 PLC . . . P 5 51.759 -56.39 41.293 1 137.94 ? O3 PLC 405 C 1 
HETATM 29 O O1P PLC . . . P 5 48.098 -58.235 35.911 1 168.56 ? O1P PLC 405 C 1 
HETATM 30 O O2P PLC . . . P 5 49.215 -60.384 36.564 1 167.6 ? O2P PLC 405 C 1 
HETATM 31 O O3P PLC . . . P 5 49.351 -58.302 38.15 1 159.36 ? O3P PLC 405 C 1 
HETATM 32 O O4P PLC . . . P 5 47.087 -59.613 37.937 1 165.56 ? O4P PLC 405 C 1 
HETATM 33 N N PLC . . . P 5 44.198 -62.187 38.641 1 158.18 ? N PLC 405 C 1 
HETATM 34 P P PLC . . . P 5 48.43 -59.1 37.075 1 166.77 ? P PLC 405 C 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#