data_4QHO # _model_server_result.job_id h8uHPXgiXdnWE6P0U2vAJA _model_server_result.datetime_utc '2024-10-28 02:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4QHO # _exptl.entry_id 4QHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.315 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[3-hydroxy-6-(naphthalen-1-yl)pyridin-2-yl]carbonyl}glycine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QHO _cell.length_a 141.384 _cell.length_b 141.384 _cell.length_c 83.954 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 221 A HIS 231 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 A OD1 ASP 223 A ASP 233 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 A NE2 HIS 297 A HIS 307 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 B ZN ZN . A ZN 601 1_555 C O3 NKG . A NKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 B ZN ZN . A ZN 601 1_555 C N NKG . A NKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 B ZN ZN . A ZN 601 1_555 D O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'C18 H14 N2 O4' _chem_comp.formula_weight 322.315 _chem_comp.id NKG _chem_comp.mon_nstd_flag . _chem_comp.name N-{[3-hydroxy-6-(naphthalen-1-yl)pyridin-2-yl]carbonyl}glycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 NKG doub 237 n y C8 C7 NKG sing 238 n y C9 C10 NKG sing 239 n y C7 C6 NKG doub 240 n y C10 C11 NKG doub 241 n y C10 C5 NKG sing 242 n y C11 C12 NKG sing 243 n y C6 C5 NKG sing 244 n y C5 C4 NKG doub 245 n y C12 C13 NKG doub 246 n y C4 C13 NKG sing 247 n y C4 C3 NKG sing 248 n n C3 C2 NKG doub 249 n y C3 N NKG sing 250 n y C2 C1 NKG sing 251 n y N C14 NKG doub 252 n y C1 C NKG doub 253 n y C14 C NKG sing 254 n y C14 C15 NKG sing 255 n n C O NKG sing 256 n n O3 C15 NKG doub 257 n n C15 N1 NKG sing 258 n n N1 C16 NKG sing 259 n n C16 C17 NKG sing 260 n n O1 C17 NKG doub 261 n n C17 O2 NKG sing 262 n n N1 H1 NKG sing 263 n n C16 H2 NKG sing 264 n n C16 H3 NKG sing 265 n n O2 H4 NKG sing 266 n n O H5 NKG sing 267 n n C2 H6 NKG sing 268 n n C1 H7 NKG sing 269 n n C13 H8 NKG sing 270 n n C12 H9 NKG sing 271 n n C11 H10 NKG sing 272 n n C9 H11 NKG sing 273 n n C8 H12 NKG sing 274 n n C7 H13 NKG sing 275 n n C6 H14 NKG sing 276 n n # _atom_sites.entry_id 4QHO _atom_sites.fract_transf_matrix[1][1] 0.007073 _atom_sites.fract_transf_matrix[1][2] 0.004084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 1 ZN ZN . C 3 NKG A 1 602 1 NKG UNX . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 9 HOH HOH . D 4 HOH A 10 710 11 HOH HOH . D 4 HOH A 11 711 13 HOH HOH . D 4 HOH A 12 712 14 HOH HOH . D 4 HOH A 13 713 16 HOH HOH . D 4 HOH A 14 714 17 HOH HOH . D 4 HOH A 15 715 18 HOH HOH . D 4 HOH A 16 716 19 HOH HOH . D 4 HOH A 17 717 20 HOH HOH . D 4 HOH A 18 718 21 HOH HOH . D 4 HOH A 19 719 22 HOH HOH . D 4 HOH A 20 720 23 HOH HOH . D 4 HOH A 21 721 25 HOH HOH . D 4 HOH A 22 722 29 HOH HOH . D 4 HOH A 23 723 30 HOH HOH . D 4 HOH A 24 724 32 HOH HOH . D 4 HOH A 25 725 33 HOH HOH . D 4 HOH A 26 726 34 HOH HOH . D 4 HOH A 27 727 35 HOH HOH . D 4 HOH A 28 728 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 NKG . . . C 3 31.354 -5.574 -24.874 1 68.49 ? O3 NKG 602 A 1 HETATM 2 C C15 NKG . . . C 3 31.288 -6.729 -24.577 1 69.46 ? C15 NKG 602 A 1 HETATM 3 N N1 NKG . . . C 3 32.026 -7.197 -23.588 1 69.53 ? N1 NKG 602 A 1 HETATM 4 C C16 NKG . . . C 3 32.991 -6.37 -22.928 1 70 ? C16 NKG 602 A 1 HETATM 5 C C17 NKG . . . C 3 33.947 -7.209 -22.119 1 70.67 ? C17 NKG 602 A 1 HETATM 6 O O2 NKG . . . C 3 34.47 -6.746 -21.129 1 71.76 ? O2 NKG 602 A 1 HETATM 7 O O1 NKG . . . C 3 34.252 -8.461 -22.437 1 70.62 ? O1 NKG 602 A 1 HETATM 8 C C14 NKG . . . C 3 30.371 -7.567 -25.39 1 71.24 ? C14 NKG 602 A 1 HETATM 9 C C NKG . . . C 3 30.379 -9.037 -25.287 1 72.93 ? C NKG 602 A 1 HETATM 10 O O NKG . . . C 3 31.194 -9.713 -24.455 1 73.03 ? O NKG 602 A 1 HETATM 11 N N NKG . . . C 3 29.524 -6.958 -26.244 1 70.64 ? N NKG 602 A 1 HETATM 12 C C3 NKG . . . C 3 28.688 -7.692 -27.002 1 70.62 ? C3 NKG 602 A 1 HETATM 13 C C2 NKG . . . C 3 28.671 -9.084 -26.952 1 73.43 ? C2 NKG 602 A 1 HETATM 14 C C1 NKG . . . C 3 29.51 -9.766 -26.08 1 74.2 ? C1 NKG 602 A 1 HETATM 15 C C4 NKG . . . C 3 27.768 -7.06 -27.945 1 66.39 ? C4 NKG 602 A 1 HETATM 16 C C13 NKG . . . C 3 26.407 -6.981 -27.67 1 65.26 ? C13 NKG 602 A 1 HETATM 17 C C12 NKG . . . C 3 25.527 -6.399 -28.596 1 65.09 ? C12 NKG 602 A 1 HETATM 18 C C11 NKG . . . C 3 25.989 -5.891 -29.818 1 65.91 ? C11 NKG 602 A 1 HETATM 19 C C10 NKG . . . C 3 27.354 -5.931 -30.149 1 66.13 ? C10 NKG 602 A 1 HETATM 20 C C5 NKG . . . C 3 28.316 -6.542 -29.21 1 65.94 ? C5 NKG 602 A 1 HETATM 21 C C9 NKG . . . C 3 27.85 -5.422 -31.345 1 66.55 ? C9 NKG 602 A 1 HETATM 22 C C8 NKG . . . C 3 29.217 -5.522 -31.648 1 65.25 ? C8 NKG 602 A 1 HETATM 23 C C7 NKG . . . C 3 30.115 -6.106 -30.76 1 64.35 ? C7 NKG 602 A 1 HETATM 24 C C6 NKG . . . C 3 29.668 -6.612 -29.538 1 65 ? C6 NKG 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #