data_4QHV # _model_server_result.job_id j1EpKJddVBu64GfWWUld-Q _model_server_result.datetime_utc '2024-11-24 13:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4QHV # _exptl.entry_id 4QHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QHV _cell.length_a 84.393 _cell.length_b 84.393 _cell.length_c 78.333 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 282 n n PA O2A NDP sing 283 n n PA O5B NDP sing 284 n n PA O3 NDP sing 285 n n O2A HOA2 NDP sing 286 n n O5B C5B NDP sing 287 n n C5B C4B NDP sing 288 n n C5B H51A NDP sing 289 n n C5B H52A NDP sing 290 n n C4B O4B NDP sing 291 n n C4B C3B NDP sing 292 n n C4B H4B NDP sing 293 n n O4B C1B NDP sing 294 n n C3B O3B NDP sing 295 n n C3B C2B NDP sing 296 n n C3B H3B NDP sing 297 n n O3B HO3A NDP sing 298 n n C2B O2B NDP sing 299 n n C2B C1B NDP sing 300 n n C2B H2B NDP sing 301 n n O2B P2B NDP sing 302 n n C1B N9A NDP sing 303 n n C1B H1B NDP sing 304 n n N9A C8A NDP sing 305 n y N9A C4A NDP sing 306 n y C8A N7A NDP doub 307 n y C8A H8A NDP sing 308 n n N7A C5A NDP sing 309 n y C5A C6A NDP sing 310 n y C5A C4A NDP doub 311 n y C6A N6A NDP sing 312 n n C6A N1A NDP doub 313 n y N6A H61A NDP sing 314 n n N6A H62A NDP sing 315 n n N1A C2A NDP sing 316 n y C2A N3A NDP doub 317 n y C2A H2A NDP sing 318 n n N3A C4A NDP sing 319 n y O3 PN NDP sing 320 n n PN O1N NDP doub 321 n n PN O2N NDP sing 322 n n PN O5D NDP sing 323 n n O2N H21N NDP sing 324 n n O5D C5D NDP sing 325 n n C5D C4D NDP sing 326 n n C5D H51N NDP sing 327 n n C5D H52N NDP sing 328 n n C4D O4D NDP sing 329 n n C4D C3D NDP sing 330 n n C4D H4D NDP sing 331 n n O4D C1D NDP sing 332 n n C3D O3D NDP sing 333 n n C3D C2D NDP sing 334 n n C3D H3D NDP sing 335 n n O3D HO3N NDP sing 336 n n C2D O2D NDP sing 337 n n C2D C1D NDP sing 338 n n C2D H2D NDP sing 339 n n O2D HO2N NDP sing 340 n n C1D N1N NDP sing 341 n n C1D H1D NDP sing 342 n n N1N C2N NDP sing 343 n n N1N C6N NDP sing 344 n n C2N C3N NDP doub 345 n n C2N H2N NDP sing 346 n n C3N C7N NDP sing 347 n n C3N C4N NDP sing 348 n n C7N O7N NDP doub 349 n n C7N N7N NDP sing 350 n n N7N H71N NDP sing 351 n n N7N H72N NDP sing 352 n n C4N C5N NDP sing 353 n n C4N H41N NDP sing 354 n n C4N H42N NDP sing 355 n n C5N C6N NDP doub 356 n n C5N H5N NDP sing 357 n n C6N H6N NDP sing 358 n n P2B O1X NDP doub 359 n n P2B O2X NDP sing 360 n n P2B O3X NDP sing 361 n n O2X HOP2 NDP sing 362 n n O3X HOP3 NDP sing 363 n n # _atom_sites.entry_id 4QHV _atom_sites.fract_transf_matrix[1][1] 0.011849 _atom_sites.fract_transf_matrix[1][2] 0.006841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 1 NDP NDP . C 3 IXF A 1 202 1 IXF DZR . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 2 SO4 SO4 . F 4 SO4 A 1 205 3 SO4 SO4 . G 4 SO4 A 1 206 4 SO4 SO4 . H 4 SO4 A 1 207 5 SO4 SO4 . I 4 SO4 A 1 208 6 SO4 SO4 . J 5 HOH A 1 301 1 HOH HOH . J 5 HOH A 2 302 2 HOH HOH . J 5 HOH A 3 303 3 HOH HOH . J 5 HOH A 4 304 4 HOH HOH . J 5 HOH A 5 305 5 HOH HOH . J 5 HOH A 6 306 6 HOH HOH . J 5 HOH A 7 307 7 HOH HOH . J 5 HOH A 8 308 8 HOH HOH . J 5 HOH A 9 309 9 HOH HOH . J 5 HOH A 10 310 10 HOH HOH . J 5 HOH A 11 311 11 HOH HOH . J 5 HOH A 12 312 12 HOH HOH . J 5 HOH A 13 313 13 HOH HOH . J 5 HOH A 14 314 14 HOH HOH . J 5 HOH A 15 315 15 HOH HOH . J 5 HOH A 16 316 16 HOH HOH . J 5 HOH A 17 317 17 HOH HOH . J 5 HOH A 18 318 18 HOH HOH . J 5 HOH A 19 319 19 HOH HOH . J 5 HOH A 20 320 20 HOH HOH . J 5 HOH A 21 321 21 HOH HOH . J 5 HOH A 22 322 22 HOH HOH . J 5 HOH A 23 323 23 HOH HOH . J 5 HOH A 24 324 24 HOH HOH . J 5 HOH A 25 325 25 HOH HOH . J 5 HOH A 26 326 26 HOH HOH . J 5 HOH A 27 327 27 HOH HOH . J 5 HOH A 28 328 28 HOH HOH . J 5 HOH A 29 329 29 HOH HOH . J 5 HOH A 30 330 30 HOH HOH . J 5 HOH A 31 331 31 HOH HOH . J 5 HOH A 32 332 32 HOH HOH . J 5 HOH A 33 333 33 HOH HOH . J 5 HOH A 34 334 34 HOH HOH . J 5 HOH A 35 335 35 HOH HOH . J 5 HOH A 36 336 36 HOH HOH . J 5 HOH A 37 337 37 HOH HOH . J 5 HOH A 38 338 38 HOH HOH . J 5 HOH A 39 339 39 HOH HOH . J 5 HOH A 40 340 40 HOH HOH . J 5 HOH A 41 341 41 HOH HOH . J 5 HOH A 42 342 42 HOH HOH . J 5 HOH A 43 343 43 HOH HOH . J 5 HOH A 44 344 44 HOH HOH . J 5 HOH A 45 345 45 HOH HOH . J 5 HOH A 46 346 46 HOH HOH . J 5 HOH A 47 347 47 HOH HOH . J 5 HOH A 48 348 48 HOH HOH . J 5 HOH A 49 349 49 HOH HOH . J 5 HOH A 50 350 50 HOH HOH . J 5 HOH A 51 351 51 HOH HOH . J 5 HOH A 52 352 52 HOH HOH . J 5 HOH A 53 353 53 HOH HOH . J 5 HOH A 54 354 54 HOH HOH . J 5 HOH A 55 355 56 HOH HOH . J 5 HOH A 56 356 57 HOH HOH . J 5 HOH A 57 357 58 HOH HOH . J 5 HOH A 58 358 59 HOH HOH . J 5 HOH A 59 359 60 HOH HOH . J 5 HOH A 60 360 61 HOH HOH . J 5 HOH A 61 361 62 HOH HOH . J 5 HOH A 62 362 63 HOH HOH . J 5 HOH A 63 363 64 HOH HOH . J 5 HOH A 64 364 65 HOH HOH . J 5 HOH A 65 365 66 HOH HOH . J 5 HOH A 66 366 67 HOH HOH . J 5 HOH A 67 367 68 HOH HOH . J 5 HOH A 68 368 69 HOH HOH . J 5 HOH A 69 369 70 HOH HOH . J 5 HOH A 70 370 71 HOH HOH . J 5 HOH A 71 371 72 HOH HOH . J 5 HOH A 72 372 73 HOH HOH . J 5 HOH A 73 373 74 HOH HOH . J 5 HOH A 74 374 75 HOH HOH . J 5 HOH A 75 375 77 HOH HOH . J 5 HOH A 76 376 78 HOH HOH . J 5 HOH A 77 377 79 HOH HOH . J 5 HOH A 78 378 80 HOH HOH . J 5 HOH A 79 379 81 HOH HOH . J 5 HOH A 80 380 82 HOH HOH . J 5 HOH A 81 381 83 HOH HOH . J 5 HOH A 82 382 84 HOH HOH . J 5 HOH A 83 383 85 HOH HOH . J 5 HOH A 84 384 86 HOH HOH . J 5 HOH A 85 385 87 HOH HOH . J 5 HOH A 86 386 88 HOH HOH . J 5 HOH A 87 387 89 HOH HOH . J 5 HOH A 88 388 90 HOH HOH . J 5 HOH A 89 389 91 HOH HOH . J 5 HOH A 90 390 92 HOH HOH . J 5 HOH A 91 391 93 HOH HOH . J 5 HOH A 92 392 94 HOH HOH . J 5 HOH A 93 393 95 HOH HOH . J 5 HOH A 94 394 97 HOH HOH . J 5 HOH A 95 395 98 HOH HOH . J 5 HOH A 96 396 99 HOH HOH . J 5 HOH A 97 397 100 HOH HOH . J 5 HOH A 98 398 101 HOH HOH . J 5 HOH A 99 399 102 HOH HOH . J 5 HOH A 100 400 104 HOH HOH . J 5 HOH A 101 401 105 HOH HOH . J 5 HOH A 102 402 106 HOH HOH . J 5 HOH A 103 403 107 HOH HOH . J 5 HOH A 104 404 108 HOH HOH . J 5 HOH A 105 405 109 HOH HOH . J 5 HOH A 106 406 110 HOH HOH . J 5 HOH A 107 407 111 HOH HOH . J 5 HOH A 108 408 112 HOH HOH . J 5 HOH A 109 409 113 HOH HOH . J 5 HOH A 110 410 114 HOH HOH . J 5 HOH A 111 411 115 HOH HOH . J 5 HOH A 112 412 116 HOH HOH . J 5 HOH A 113 413 117 HOH HOH . J 5 HOH A 114 414 118 HOH HOH . J 5 HOH A 115 415 119 HOH HOH . J 5 HOH A 116 416 120 HOH HOH . J 5 HOH A 117 417 121 HOH HOH . J 5 HOH A 118 418 122 HOH HOH . J 5 HOH A 119 419 123 HOH HOH . J 5 HOH A 120 420 124 HOH HOH . J 5 HOH A 121 421 125 HOH HOH . J 5 HOH A 122 422 126 HOH HOH . J 5 HOH A 123 423 127 HOH HOH . J 5 HOH A 124 424 128 HOH HOH . J 5 HOH A 125 425 129 HOH HOH . J 5 HOH A 126 426 130 HOH HOH . J 5 HOH A 127 427 131 HOH HOH . J 5 HOH A 128 428 132 HOH HOH . J 5 HOH A 129 429 133 HOH HOH . J 5 HOH A 130 430 134 HOH HOH . J 5 HOH A 131 431 135 HOH HOH . J 5 HOH A 132 432 136 HOH HOH . J 5 HOH A 133 433 137 HOH HOH . J 5 HOH A 134 434 138 HOH HOH . J 5 HOH A 135 435 139 HOH HOH . J 5 HOH A 136 436 140 HOH HOH . J 5 HOH A 137 437 142 HOH HOH . J 5 HOH A 138 438 144 HOH HOH . J 5 HOH A 139 439 145 HOH HOH . J 5 HOH A 140 440 146 HOH HOH . J 5 HOH A 141 441 147 HOH HOH . J 5 HOH A 142 442 148 HOH HOH . J 5 HOH A 143 443 149 HOH HOH . J 5 HOH A 144 444 150 HOH HOH . J 5 HOH A 145 445 151 HOH HOH . J 5 HOH A 146 446 152 HOH HOH . J 5 HOH A 147 447 153 HOH HOH . J 5 HOH A 148 448 154 HOH HOH . J 5 HOH A 149 449 155 HOH HOH . J 5 HOH A 150 450 156 HOH HOH . J 5 HOH A 151 451 157 HOH HOH . J 5 HOH A 152 452 158 HOH HOH . J 5 HOH A 153 453 159 HOH HOH . J 5 HOH A 154 454 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -6.071 -22.622 -35.822 0.5 25.6 ? PA NDP 201 A 1 HETATM 2 O O1A NDP . . . B 2 -5.156 -21.486 -35.561 0.5 23 ? O1A NDP 201 A 1 HETATM 3 O O2A NDP . . . B 2 -5.534 -23.985 -36.136 0.5 28.01 ? O2A NDP 201 A 1 HETATM 4 O O5B NDP . . . B 2 -5.89 -22.211 -37.391 0.5 25.1 ? O5B NDP 201 A 1 HETATM 5 C C5B NDP . . . B 2 -6.4 -23.022 -38.494 0.5 19.86 ? C5B NDP 201 A 1 HETATM 6 C C4B NDP . . . B 2 -5.627 -22.769 -39.829 0.5 19.28 ? C4B NDP 201 A 1 HETATM 7 O O4B NDP . . . B 2 -4.21 -23.258 -39.716 0.5 17.89 ? O4B NDP 201 A 1 HETATM 8 C C3B NDP . . . B 2 -6.332 -23.66 -40.808 0.5 21.12 ? C3B NDP 201 A 1 HETATM 9 O O3B NDP . . . B 2 -7.157 -22.786 -41.669 0.5 24.01 ? O3B NDP 201 A 1 HETATM 10 C C2B NDP . . . B 2 -5.147 -24.318 -41.543 0.5 19 ? C2B NDP 201 A 1 HETATM 11 O O2B NDP . . . B 2 -4.589 -23.467 -42.491 0.5 24.94 ? O2B NDP 201 A 1 HETATM 12 C C1B NDP . . . B 2 -3.966 -24.353 -40.595 0.5 17.9 ? C1B NDP 201 A 1 HETATM 13 N N9A NDP . . . B 2 -3.706 -25.603 -39.761 0.5 16.62 ? N9A NDP 201 A 1 HETATM 14 C C8A NDP . . . B 2 -4.203 -25.959 -38.552 0.5 16.04 ? C8A NDP 201 A 1 HETATM 15 N N7A NDP . . . B 2 -3.725 -27.163 -38.145 0.5 17.34 ? N7A NDP 201 A 1 HETATM 16 C C5A NDP . . . B 2 -2.858 -27.539 -39.038 0.5 14.13 ? C5A NDP 201 A 1 HETATM 17 C C6A NDP . . . B 2 -2.01 -28.625 -39.268 0.5 15.69 ? C6A NDP 201 A 1 HETATM 18 N N6A NDP . . . B 2 -1.801 -29.73 -38.465 0.5 15.17 ? N6A NDP 201 A 1 HETATM 19 N N1A NDP . . . B 2 -1.314 -28.566 -40.392 0.5 14.42 ? N1A NDP 201 A 1 HETATM 20 C C2A NDP . . . B 2 -1.372 -27.593 -41.311 0.5 14.14 ? C2A NDP 201 A 1 HETATM 21 N N3A NDP . . . B 2 -2.134 -26.635 -41.168 0.5 13.17 ? N3A NDP 201 A 1 HETATM 22 C C4A NDP . . . B 2 -2.883 -26.573 -40.074 0.5 15.26 ? C4A NDP 201 A 1 HETATM 23 O O3 NDP . . . B 2 -7.687 -22.336 -36.048 0.5 23.91 ? O3 NDP 201 A 1 HETATM 24 P PN NDP . . . B 2 -8.821 -21.971 -34.873 0.5 19.05 ? PN NDP 201 A 1 HETATM 25 O O1N NDP . . . B 2 -8.861 -23.163 -34.052 0.5 19.32 ? O1N NDP 201 A 1 HETATM 26 O O2N NDP . . . B 2 -10.11 -21.429 -35.434 0.5 26.38 ? O2N NDP 201 A 1 HETATM 27 O O5D NDP . . . B 2 -8.214 -20.757 -34.015 0.5 18.04 ? O5D NDP 201 A 1 HETATM 28 C C5D NDP . . . B 2 -8.356 -19.402 -33.784 0.5 20.49 ? C5D NDP 201 A 1 HETATM 29 C C4D NDP . . . B 2 -9.196 -19.223 -32.441 0.5 19.26 ? C4D NDP 201 A 1 HETATM 30 O O4D NDP . . . B 2 -8.862 -19.54 -31.004 0.5 19.71 ? O4D NDP 201 A 1 HETATM 31 C C3D NDP . . . B 2 -9.191 -17.732 -32.452 0.5 19.12 ? C3D NDP 201 A 1 HETATM 32 O O3D NDP . . . B 2 -10.439 -17.404 -31.965 0.5 16.22 ? O3D NDP 201 A 1 HETATM 33 C C2D NDP . . . B 2 -8.075 -17.221 -31.49 0.5 18.94 ? C2D NDP 201 A 1 HETATM 34 O O2D NDP . . . B 2 -8.429 -16.075 -30.704 0.5 21.08 ? O2D NDP 201 A 1 HETATM 35 C C1D NDP . . . B 2 -8.183 -18.278 -30.412 0.5 16.68 ? C1D NDP 201 A 1 HETATM 36 N N1N NDP . . . B 2 -7.049 -18.886 -29.738 0.5 15.01 ? N1N NDP 201 A 1 HETATM 37 C C2N NDP . . . B 2 -7.31 -18.941 -28.38 0.5 13.83 ? C2N NDP 201 A 1 HETATM 38 C C3N NDP . . . B 2 -6.457 -19.59 -27.566 0.5 13.69 ? C3N NDP 201 A 1 HETATM 39 C C7N NDP . . . B 2 -6.701 -19.626 -26.056 0.5 12.9 ? C7N NDP 201 A 1 HETATM 40 O O7N NDP . . . B 2 -7.695 -19.093 -25.484 0.5 13.68 ? O7N NDP 201 A 1 HETATM 41 N N7N NDP . . . B 2 -5.697 -20.289 -25.54 0.5 10.16 ? N7N NDP 201 A 1 HETATM 42 C C4N NDP . . . B 2 -5.317 -20.173 -28.149 0.5 14.02 ? C4N NDP 201 A 1 HETATM 43 C C5N NDP . . . B 2 -5.099 -20.126 -29.548 0.5 14.96 ? C5N NDP 201 A 1 HETATM 44 C C6N NDP . . . B 2 -5.964 -19.479 -30.427 0.5 12.17 ? C6N NDP 201 A 1 HETATM 45 P P2B NDP . . . B 2 -4.682 -24.046 -43.964 0.5 22.27 ? P2B NDP 201 A 1 HETATM 46 O O1X NDP . . . B 2 -6.293 -23.873 -44.181 0.5 21.72 ? O1X NDP 201 A 1 HETATM 47 O O2X NDP . . . B 2 -3.971 -22.841 -44.767 0.5 21.67 ? O2X NDP 201 A 1 HETATM 48 O O3X NDP . . . B 2 -4.287 -25.461 -44.077 0.5 23.37 ? O3X NDP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #