data_4QI6 # _model_server_result.job_id oucV4WaqCLfYj6jpZdCG3Q _model_server_result.datetime_utc '2025-07-23 11:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4QI6 # _exptl.entry_id 4QI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QI6 _cell.length_a 156.151 _cell.length_b 156.151 _cell.length_c 85.337 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 129 A CYS 129 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? disulf ? disulf3 A SG CYS 303 A CYS 303 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 779 A CYS 779 1_555 A SG CYS 796 A CYS 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 790 A CYS 790 1_555 A SG CYS 806 A CYS 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale2 A OG SER 195 A SER 195 1_555 H C1 MAN . A MAN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A OG1 THR 197 A THR 197 1_555 I C1 MAN . A MAN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A OG1 THR 204 A THR 204 1_555 J C1 MAN . A MAN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A OG1 THR 206 A THR 206 1_555 K C1 MAN . A MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A OG1 THR 226 A THR 226 1_555 L C1 MAN . A MAN 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 400 A ASN 400 1_555 D C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 A ND2 ASN 437 A ASN 437 1_555 E C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 A ND2 ASN 516 A ASN 516 1_555 F C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 A ND2 ASN 678 A ASN 678 1_555 G C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? metalc ? metalc1 A SD MET 74 A MET 74 1_555 B FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A NE2 HIS 176 A HIS 176 1_555 B FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 220 n n CHA C4D HEM doub 221 n n CHA HHA HEM sing 222 n n CHB C4A HEM sing 223 n n CHB C1B HEM doub 224 n n CHB HHB HEM sing 225 n n CHC C4B HEM sing 226 n n CHC C1C HEM doub 227 n n CHC HHC HEM sing 228 n n CHD C4C HEM doub 229 n n CHD C1D HEM sing 230 n n CHD HHD HEM sing 231 n n C1A C2A HEM doub 232 n y C1A NA HEM sing 233 n y C2A C3A HEM sing 234 n y C2A CAA HEM sing 235 n n C3A C4A HEM doub 236 n y C3A CMA HEM sing 237 n n C4A NA HEM sing 238 n y CMA HMA HEM sing 239 n n CMA HMAA HEM sing 240 n n CMA HMAB HEM sing 241 n n CAA CBA HEM sing 242 n n CAA HAA HEM sing 243 n n CAA HAAA HEM sing 244 n n CBA CGA HEM sing 245 n n CBA HBA HEM sing 246 n n CBA HBAA HEM sing 247 n n CGA O1A HEM doub 248 n n CGA O2A HEM sing 249 n n C1B C2B HEM sing 250 n n C1B NB HEM sing 251 n n C2B C3B HEM doub 252 n n C2B CMB HEM sing 253 n n C3B C4B HEM sing 254 n n C3B CAB HEM sing 255 n n C4B NB HEM doub 256 n n CMB HMB HEM sing 257 n n CMB HMBA HEM sing 258 n n CMB HMBB HEM sing 259 n n CAB CBB HEM doub 260 n n CAB HAB HEM sing 261 n n CBB HBB HEM sing 262 n n CBB HBBA HEM sing 263 n n C1C C2C HEM sing 264 n y C1C NC HEM sing 265 n y C2C C3C HEM doub 266 n y C2C CMC HEM sing 267 n n C3C C4C HEM sing 268 n y C3C CAC HEM sing 269 n n C4C NC HEM sing 270 n y CMC HMC HEM sing 271 n n CMC HMCA HEM sing 272 n n CMC HMCB HEM sing 273 n n CAC CBC HEM doub 274 n n CAC HAC HEM sing 275 n n CBC HBC HEM sing 276 n n CBC HBCA HEM sing 277 n n C1D C2D HEM sing 278 n n C1D ND HEM doub 279 n n C2D C3D HEM doub 280 n n C2D CMD HEM sing 281 n n C3D C4D HEM sing 282 n n C3D CAD HEM sing 283 n n C4D ND HEM sing 284 n n CMD HMD HEM sing 285 n n CMD HMDA HEM sing 286 n n CMD HMDB HEM sing 287 n n CAD CBD HEM sing 288 n n CAD HAD HEM sing 289 n n CAD HADA HEM sing 290 n n CBD CGD HEM sing 291 n n CBD HBD HEM sing 292 n n CBD HBDA HEM sing 293 n n CGD O1D HEM doub 294 n n CGD O2D HEM sing 295 n n O2A H2A HEM sing 296 n n O2D H2D HEM sing 297 n n FE NA HEM sing 298 n n FE NB HEM sing 299 n n FE NC HEM sing 300 n n FE ND HEM sing 301 n n # _atom_sites.entry_id 4QI6 _atom_sites.fract_transf_matrix[1][1] 0.006404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 900 HEM HEM . C 3 FAD A 1 902 901 FAD FAD . D 4 NAG A 1 903 904 NAG NAG . E 4 NAG A 1 904 907 NAG NAG . F 4 NAG A 1 905 909 NAG NAG . G 4 NAG A 1 906 910 NAG NAG . H 5 MAN A 1 907 1001 MAN MAN . I 5 MAN A 1 908 1002 MAN MAN . J 5 MAN A 1 909 1003 MAN MAN . K 5 MAN A 1 910 1004 MAN MAN . L 5 MAN A 1 911 1005 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 197.837 3.884 0.799 1 40.03 ? CHA HEM 901 A 1 HETATM 2 C CHB HEM . . . B 2 193.985 7.194 1.02 1 39.64 ? CHB HEM 901 A 1 HETATM 3 C CHC HEM . . . B 2 196.494 10.199 -1.825 1 40.44 ? CHC HEM 901 A 1 HETATM 4 C CHD HEM . . . B 2 200.509 7.075 -1.701 1 36.72 ? CHD HEM 901 A 1 HETATM 5 C C1A HEM . . . B 2 196.582 4.568 1.042 1 40.75 ? C1A HEM 901 A 1 HETATM 6 C C2A HEM . . . B 2 195.541 3.916 1.879 1 39.24 ? C2A HEM 901 A 1 HETATM 7 C C3A HEM . . . B 2 194.426 4.885 1.943 1 39.94 ? C3A HEM 901 A 1 HETATM 8 C C4A HEM . . . B 2 194.884 6.062 1.163 1 39.72 ? C4A HEM 901 A 1 HETATM 9 C CMA HEM . . . B 2 193.107 4.734 2.651 1 39.8 ? CMA HEM 901 A 1 HETATM 10 C CAA HEM . . . B 2 195.611 2.544 2.51 1 42.56 ? CAA HEM 901 A 1 HETATM 11 C CBA HEM . . . B 2 194.623 1.628 1.795 1 44.58 ? CBA HEM 901 A 1 HETATM 12 C CGA HEM . . . B 2 194.755 0.214 2.311 1 47.02 ? CGA HEM 901 A 1 HETATM 13 O O1A HEM . . . B 2 195.412 0.02 3.359 1 47.69 ? O1A HEM 901 A 1 HETATM 14 O O2A HEM . . . B 2 194.201 -0.71 1.671 1 48.66 ? O2A HEM 901 A 1 HETATM 15 C C1B HEM . . . B 2 194.342 8.303 0.173 1 38.58 ? C1B HEM 901 A 1 HETATM 16 C C2B HEM . . . B 2 193.279 9.258 -0.237 1 41.07 ? C2B HEM 901 A 1 HETATM 17 C C3B HEM . . . B 2 194.058 10.145 -1.083 1 40.11 ? C3B HEM 901 A 1 HETATM 18 C C4B HEM . . . B 2 195.431 9.592 -1.036 1 39.77 ? C4B HEM 901 A 1 HETATM 19 C CMB HEM . . . B 2 191.822 9.302 0.134 1 40.78 ? CMB HEM 901 A 1 HETATM 20 C CAB HEM . . . B 2 193.582 11.347 -1.815 1 41 ? CAB HEM 901 A 1 HETATM 21 C CBB HEM . . . B 2 193.061 12.363 -1.149 1 42.56 ? CBB HEM 901 A 1 HETATM 22 C C1C HEM . . . B 2 197.796 9.577 -2.04 1 39.49 ? C1C HEM 901 A 1 HETATM 23 C C2C HEM . . . B 2 198.916 10.412 -2.569 1 37.67 ? C2C HEM 901 A 1 HETATM 24 C C3C HEM . . . B 2 200.085 9.503 -2.524 1 37.45 ? C3C HEM 901 A 1 HETATM 25 C C4C HEM . . . B 2 199.633 8.228 -1.914 1 37.25 ? C4C HEM 901 A 1 HETATM 26 C CMC HEM . . . B 2 198.821 11.83 -3.076 1 38.5 ? CMC HEM 901 A 1 HETATM 27 C CAC HEM . . . B 2 201.475 9.784 -2.972 1 37.78 ? CAC HEM 901 A 1 HETATM 28 C CBC HEM . . . B 2 201.737 10.54 -4.021 1 37.69 ? CBC HEM 901 A 1 HETATM 29 C C1D HEM . . . B 2 200.044 5.865 -1.022 1 36.69 ? C1D HEM 901 A 1 HETATM 30 C C2D HEM . . . B 2 200.856 4.622 -1.131 1 37.46 ? C2D HEM 901 A 1 HETATM 31 C C3D HEM . . . B 2 200.05 3.673 -0.375 1 37.9 ? C3D HEM 901 A 1 HETATM 32 C C4D HEM . . . B 2 198.876 4.495 0.002 1 39.89 ? C4D HEM 901 A 1 HETATM 33 C CMD HEM . . . B 2 202.18 4.392 -1.814 1 37.48 ? CMD HEM 901 A 1 HETATM 34 C CAD HEM . . . B 2 200.315 2.216 -0.083 1 38.88 ? CAD HEM 901 A 1 HETATM 35 C CBD HEM . . . B 2 201.275 2.144 1.104 1 37.49 ? CBD HEM 901 A 1 HETATM 36 C CGD HEM . . . B 2 200.565 2.528 2.386 1 37.57 ? CGD HEM 901 A 1 HETATM 37 O O1D HEM . . . B 2 199.523 1.912 2.7 1 38.77 ? O1D HEM 901 A 1 HETATM 38 O O2D HEM . . . B 2 201.046 3.445 3.092 1 39.86 ? O2D HEM 901 A 1 HETATM 39 N NA HEM . . . B 2 196.225 5.91 0.58 1 38.97 ? NA HEM 901 A 1 HETATM 40 N NB HEM . . . B 2 195.61 8.466 -0.298 1 38.99 ? NB HEM 901 A 1 HETATM 41 N NC HEM . . . B 2 198.207 8.237 -1.595 1 38.34 ? NC HEM 901 A 1 HETATM 42 N ND HEM . . . B 2 198.85 5.802 -0.357 1 37.22 ? ND HEM 901 A 1 HETATM 43 FE FE HEM . . . B 2 197.438 7.382 -0.009 1 38.49 ? FE HEM 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #