data_4QI6 # _model_server_result.job_id Q73lazgFe17caGo-nc5nKg _model_server_result.datetime_utc '2025-03-06 07:07:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 4QI6 # _exptl.entry_id 4QI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QI6 _cell.length_a 156.151 _cell.length_b 156.151 _cell.length_c 85.337 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 129 A CYS 129 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? disulf ? disulf3 A SG CYS 303 A CYS 303 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 779 A CYS 779 1_555 A SG CYS 796 A CYS 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 790 A CYS 790 1_555 A SG CYS 806 A CYS 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale2 A OG SER 195 A SER 195 1_555 H C1 MAN . A MAN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A OG1 THR 197 A THR 197 1_555 I C1 MAN . A MAN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A OG1 THR 204 A THR 204 1_555 J C1 MAN . A MAN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A OG1 THR 206 A THR 206 1_555 K C1 MAN . A MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A OG1 THR 226 A THR 226 1_555 L C1 MAN . A MAN 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 400 A ASN 400 1_555 D C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 A ND2 ASN 437 A ASN 437 1_555 E C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 A ND2 ASN 516 A ASN 516 1_555 F C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 A ND2 ASN 678 A ASN 678 1_555 G C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? metalc ? metalc1 A SD MET 74 A MET 74 1_555 B FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A NE2 HIS 176 A HIS 176 1_555 B FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 432 n n C1 O1 NAG sing 433 n n C1 O5 NAG sing 434 n n C1 H1 NAG sing 435 n n C2 C3 NAG sing 436 n n C2 N2 NAG sing 437 n n C2 H2 NAG sing 438 n n C3 C4 NAG sing 439 n n C3 O3 NAG sing 440 n n C3 H3 NAG sing 441 n n C4 C5 NAG sing 442 n n C4 O4 NAG sing 443 n n C4 H4 NAG sing 444 n n C5 C6 NAG sing 445 n n C5 O5 NAG sing 446 n n C5 H5 NAG sing 447 n n C6 O6 NAG sing 448 n n C6 H61 NAG sing 449 n n C6 H62 NAG sing 450 n n C7 C8 NAG sing 451 n n C7 N2 NAG sing 452 n n C7 O7 NAG doub 453 n n C8 H81 NAG sing 454 n n C8 H82 NAG sing 455 n n C8 H83 NAG sing 456 n n N2 HN2 NAG sing 457 n n O1 HO1 NAG sing 458 n n O3 HO3 NAG sing 459 n n O4 HO4 NAG sing 460 n n O6 HO6 NAG sing 461 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4QI6 _atom_sites.fract_transf_matrix[1][1] 0.006404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 900 HEM HEM . C 3 FAD A 1 902 901 FAD FAD . D 4 NAG A 1 903 904 NAG NAG . E 4 NAG A 1 904 907 NAG NAG . F 4 NAG A 1 905 909 NAG NAG . G 4 NAG A 1 906 910 NAG NAG . H 5 MAN A 1 907 1001 MAN MAN . I 5 MAN A 1 908 1002 MAN MAN . J 5 MAN A 1 909 1003 MAN MAN . K 5 MAN A 1 910 1004 MAN MAN . L 5 MAN A 1 911 1005 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 176.642 12.865 13.696 1 76.32 ? C1 NAG 904 A 1 HETATM 2 C C2 NAG . . . E 4 175.157 13.115 13.962 1 76.32 ? C2 NAG 904 A 1 HETATM 3 C C3 NAG . . . E 4 174.306 12.435 12.892 1 76.32 ? C3 NAG 904 A 1 HETATM 4 C C4 NAG . . . E 4 174.763 12.855 11.501 1 76.32 ? C4 NAG 904 A 1 HETATM 5 C C5 NAG . . . E 4 176.259 12.601 11.344 1 76.32 ? C5 NAG 904 A 1 HETATM 6 C C6 NAG . . . E 4 176.807 13.087 10.022 1 76.32 ? C6 NAG 904 A 1 HETATM 7 C C7 NAG . . . E 4 174.575 13.472 16.321 1 76.32 ? C7 NAG 904 A 1 HETATM 8 C C8 NAG . . . E 4 174.188 12.818 17.614 1 76.32 ? C8 NAG 904 A 1 HETATM 9 N N2 NAG . . . E 4 174.778 12.65 15.287 1 76.32 ? N2 NAG 904 A 1 HETATM 10 O O3 NAG . . . E 4 172.938 12.781 13.082 1 76.32 ? O3 NAG 904 A 1 HETATM 11 O O4 NAG . . . E 4 174.053 12.123 10.508 1 76.32 ? O4 NAG 904 A 1 HETATM 12 O O5 NAG . . . E 4 176.974 13.3 12.374 1 76.32 ? O5 NAG 904 A 1 HETATM 13 O O6 NAG . . . E 4 177.958 13.901 10.199 1 76.32 ? O6 NAG 904 A 1 HETATM 14 O O7 NAG . . . E 4 174.698 14.688 16.22 1 76.32 ? O7 NAG 904 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #