data_4QI6 # _model_server_result.job_id vf0byr-y7Ak35A46pnGPvg _model_server_result.datetime_utc '2025-03-06 07:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":907}' # _entry.id 4QI6 # _exptl.entry_id 4QI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QI6 _cell.length_a 156.151 _cell.length_b 156.151 _cell.length_c 85.337 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 129 A CYS 129 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? disulf ? disulf3 A SG CYS 303 A CYS 303 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 779 A CYS 779 1_555 A SG CYS 796 A CYS 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 790 A CYS 790 1_555 A SG CYS 806 A CYS 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale2 A OG SER 195 A SER 195 1_555 H C1 MAN . A MAN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A OG1 THR 197 A THR 197 1_555 I C1 MAN . A MAN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A OG1 THR 204 A THR 204 1_555 J C1 MAN . A MAN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A OG1 THR 206 A THR 206 1_555 K C1 MAN . A MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A OG1 THR 226 A THR 226 1_555 L C1 MAN . A MAN 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 400 A ASN 400 1_555 D C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 A ND2 ASN 437 A ASN 437 1_555 E C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 A ND2 ASN 516 A ASN 516 1_555 F C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 A ND2 ASN 678 A ASN 678 1_555 G C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? metalc ? metalc1 A SD MET 74 A MET 74 1_555 B FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A NE2 HIS 176 A HIS 176 1_555 B FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 389 n n C1 O1 MAN sing 390 n n C1 O5 MAN sing 391 n n C1 H1 MAN sing 392 n n C2 C3 MAN sing 393 n n C2 O2 MAN sing 394 n n C2 H2 MAN sing 395 n n C3 C4 MAN sing 396 n n C3 O3 MAN sing 397 n n C3 H3 MAN sing 398 n n C4 C5 MAN sing 399 n n C4 O4 MAN sing 400 n n C4 H4 MAN sing 401 n n C5 C6 MAN sing 402 n n C5 O5 MAN sing 403 n n C5 H5 MAN sing 404 n n C6 O6 MAN sing 405 n n C6 H61 MAN sing 406 n n C6 H62 MAN sing 407 n n O1 HO1 MAN sing 408 n n O2 HO2 MAN sing 409 n n O3 HO3 MAN sing 410 n n O4 HO4 MAN sing 411 n n O6 HO6 MAN sing 412 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4QI6 _atom_sites.fract_transf_matrix[1][1] 0.006404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 900 HEM HEM . C 3 FAD A 1 902 901 FAD FAD . D 4 NAG A 1 903 904 NAG NAG . E 4 NAG A 1 904 907 NAG NAG . F 4 NAG A 1 905 909 NAG NAG . G 4 NAG A 1 906 910 NAG NAG . H 5 MAN A 1 907 1001 MAN MAN . I 5 MAN A 1 908 1002 MAN MAN . J 5 MAN A 1 909 1003 MAN MAN . K 5 MAN A 1 910 1004 MAN MAN . L 5 MAN A 1 911 1005 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . H 5 228.327 12.669 -19.198 1 86 ? C1 MAN 907 A 1 HETATM 2 C C2 MAN . . . H 5 228.952 11.351 -19.702 1 90.97 ? C2 MAN 907 A 1 HETATM 3 C C3 MAN . . . H 5 230.477 11.407 -19.584 1 93.96 ? C3 MAN 907 A 1 HETATM 4 C C4 MAN . . . H 5 231.031 12.702 -20.204 1 95.19 ? C4 MAN 907 A 1 HETATM 5 C C5 MAN . . . H 5 230.355 13.918 -19.55 1 94.52 ? C5 MAN 907 A 1 HETATM 6 C C6 MAN . . . H 5 230.812 15.242 -20.141 1 96.15 ? C6 MAN 907 A 1 HETATM 7 O O2 MAN . . . H 5 228.676 11.138 -21.091 1 92.27 ? O2 MAN 907 A 1 HETATM 8 O O3 MAN . . . H 5 231.095 10.269 -20.18 1 94.54 ? O3 MAN 907 A 1 HETATM 9 O O4 MAN . . . H 5 232.433 12.776 -20.006 1 96.45 ? O4 MAN 907 A 1 HETATM 10 O O5 MAN . . . H 5 228.928 13.816 -19.749 1 90.95 ? O5 MAN 907 A 1 HETATM 11 O O6 MAN . . . H 5 230.41 16.289 -19.262 1 96.9 ? O6 MAN 907 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #