data_4QI7
#
_model_server_result.job_id            c8T6mLGPHN5_egfYeIuAJQ 
_model_server_result.datetime_utc      '2024-11-21 14:18:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":908}' 
#
_entry.id    4QI7 
#
_exptl.entry_id    4QI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QI7 
_cell.length_a            133.599 
_cell.length_b            141.851 
_cell.length_c            146.998 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 
B,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 EA N N 
? 4 FA N N 
? 4 GA N N 
? 4 HA N N 
? 4 IA N N 
? 4 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 129 A CYS 129 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf3 A SG CYS 167 A CYS 167 1_555 A SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 A SG CYS 303 A CYS 303 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 A SG CYS 778 A CYS 778 1_555 A SG CYS 795 A CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 A SG CYS 789 A CYS 789 1_555 A SG CYS 805 A CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 B SG CYS 54 B CYS 54 1_555 B SG CYS 66 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf8 B SG CYS 129 B CYS 129 1_555 B SG CYS 132 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 B SG CYS 303 B CYS 303 1_555 B SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 B SG CYS 778 B CYS 778 1_555 B SG CYS 795 B CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf11 B SG CYS 789 B CYS 789 1_555 B SG CYS 805 B CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 119 A ASN 119 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? 
covale ? covale2 A OG1 THR 222 A THR 222 1_555 L C1 MAN . A MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale3 A OG1 THR 226 A THR 226 1_555 M C1 MAN . A MAN 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
covale ? covale4 A ND2 ASN 278 A ASN 278 1_555 F C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale5 A ND2 ASN 400 A ASN 400 1_555 G C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale6 A ND2 ASN 471 A ASN 471 1_555 H C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? 
covale ? covale7 A ND2 ASN 515 A ASN 515 1_555 I C1 NAG . A NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 A ND2 ASN 541 A ASN 541 1_555 J C1 NAG . A NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? 
covale ? covale9 A ND2 ASN 555 A ASN 555 1_555 K C1 NAG . A NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale10 B ND2 ASN 119 B ASN 119 1_555 EA C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? 
covale ? covale11 B OG1 THR 222 B THR 222 1_555 KA C1 MAN . B MAN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
covale ? covale12 B OG1 THR 226 B THR 226 1_555 LA C1 MAN . B MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale13 B ND2 ASN 278 B ASN 278 1_555 FA C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? 
covale ? covale14 B ND2 ASN 400 B ASN 400 1_555 GA C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale15 B ND2 ASN 515 B ASN 515 1_555 HA C1 NAG . B NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale16 B ND2 ASN 541 B ASN 541 1_555 IA C1 NAG . B NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale17 B ND2 ASN 555 B ASN 555 1_555 JA C1 NAG . B NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
metalc ? metalc1 A SD MET 74 A MET 74 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc2 A NE2 HIS 176 A HIS 176 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc3 A O ASP 177 A ASP 177 1_555 BA MG MG . A MG 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc4 A NZ LYS 331 A LYS 331 1_555 R PT PT . A PT 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc5 A NZ LYS 433 A LYS 433 1_555 U PT PT . A PT 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc6 B SD MET 74 B MET 74 1_555 CA FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc7 B NE2 HIS 176 B HIS 176 1_555 CA FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc8 B NZ LYS 433 B LYS 433 1_555 SA PT PT . B PT 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 432 n n 
C1 O1 NAG sing 433 n n 
C1 O5 NAG sing 434 n n 
C1 H1 NAG sing 435 n n 
C2 C3 NAG sing 436 n n 
C2 N2 NAG sing 437 n n 
C2 H2 NAG sing 438 n n 
C3 C4 NAG sing 439 n n 
C3 O3 NAG sing 440 n n 
C3 H3 NAG sing 441 n n 
C4 C5 NAG sing 442 n n 
C4 O4 NAG sing 443 n n 
C4 H4 NAG sing 444 n n 
C5 C6 NAG sing 445 n n 
C5 O5 NAG sing 446 n n 
C5 H5 NAG sing 447 n n 
C6 O6 NAG sing 448 n n 
C6 H61 NAG sing 449 n n 
C6 H62 NAG sing 450 n n 
C7 C8 NAG sing 451 n n 
C7 N2 NAG sing 452 n n 
C7 O7 NAG doub 453 n n 
C8 H81 NAG sing 454 n n 
C8 H82 NAG sing 455 n n 
C8 H83 NAG sing 456 n n 
N2 HN2 NAG sing 457 n n 
O1 HO1 NAG sing 458 n n 
O3 HO3 NAG sing 459 n n 
O4 HO4 NAG sing 460 n n 
O6 HO6 NAG sing 461 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4QI7 
_atom_sites.fract_transf_matrix[1][1]    0.007485 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 901 901 HEM HEM . 
D 3 FAD A 1 902 902 FAD FAD . 
E 4 NAG A 1 903 911 NAG NAG . 
F 4 NAG A 1 904 912 NAG NAG . 
G 4 NAG A 1 905 913 NAG NAG . 
H 4 NAG A 1 906 914 NAG NAG . 
I 4 NAG A 1 907 915 NAG NAG . 
J 4 NAG A 1 908 916 NAG NAG . 
K 4 NAG A 1 909 917 NAG NAG . 
L 5 MAN A 1 910 924 MAN MAN . 
M 5 MAN A 1 911 911 MAN MAN . 
N 6 PT A 1 912 1001 PT PT . 
O 6 PT A 1 913 1002 PT PT . 
P 6 PT A 1 914 1003 PT PT . 
Q 6 PT A 1 915 1004 PT PT . 
R 6 PT A 1 916 1005 PT PT . 
S 6 PT A 1 917 1006 PT PT . 
T 6 PT A 1 918 1007 PT PT . 
U 6 PT A 1 919 1008 PT PT . 
V 6 PT A 1 920 1009 PT PT . 
W 6 PT A 1 921 1010 PT PT . 
X 6 PT A 1 922 1002 PT PT . 
Y 6 PT A 1 923 1009 PT PT . 
Z 7 MG A 1 924 1 MG MG . 
AA 7 MG A 1 925 3 MG MG . 
BA 7 MG A 1 926 4 MG MG . 
CA 2 HEM B 1 901 901 HEM HEM . 
DA 3 FAD B 1 902 902 FAD FAD . 
EA 4 NAG B 1 903 911 NAG NAG . 
FA 4 NAG B 1 904 912 NAG NAG . 
GA 4 NAG B 1 905 913 NAG NAG . 
HA 4 NAG B 1 906 915 NAG NAG . 
IA 4 NAG B 1 907 916 NAG NAG . 
JA 4 NAG B 1 908 917 NAG NAG . 
KA 5 MAN B 1 909 924 MAN MAN . 
LA 5 MAN B 1 910 910 MAN MAN . 
MA 6 PT B 1 911 1001 PT PT . 
NA 6 PT B 1 912 1003 PT PT . 
OA 6 PT B 1 913 1004 PT PT . 
PA 6 PT B 1 914 1005 PT PT . 
QA 6 PT B 1 915 1006 PT PT . 
RA 6 PT B 1 916 1007 PT PT . 
SA 6 PT B 1 917 1008 PT PT . 
TA 6 PT B 1 918 1010 PT PT . 
UA 7 MG B 1 919 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 4 184.679 33.115 184.151 1 100.29 ? C1 NAG 908 A 1 
HETATM 2 C C2 NAG . . . J 4 184.249 34.574 184.273 1 105.66 ? C2 NAG 908 A 1 
HETATM 3 C C3 NAG . . . J 4 185.149 35.329 185.246 1 106.56 ? C3 NAG 908 A 1 
HETATM 4 C C4 NAG . . . J 4 185.21 34.597 186.581 1 124.51 ? C4 NAG 908 A 1 
HETATM 5 C C5 NAG . . . J 4 185.61 33.139 186.363 1 124.8 ? C5 NAG 908 A 1 
HETATM 6 C C6 NAG . . . J 4 185.538 32.306 187.623 1 116.88 ? C6 NAG 908 A 1 
HETATM 7 C C7 NAG . . . J 4 183.309 36.078 182.576 1 103.2 ? C7 NAG 908 A 1 
HETATM 8 C C8 NAG . . . J 4 183.457 36.632 181.19 1 91.73 ? C8 NAG 908 A 1 
HETATM 9 N N2 NAG . . . J 4 184.255 35.214 182.963 1 107.78 ? N2 NAG 908 A 1 
HETATM 10 O O3 NAG . . . J 4 184.629 36.641 185.441 1 83.88 ? O3 NAG 908 A 1 
HETATM 11 O O4 NAG . . . J 4 186.148 35.227 187.45 1 129.54 ? O4 NAG 908 A 1 
HETATM 12 O O5 NAG . . . J 4 184.709 32.53 185.433 1 119.23 ? O5 NAG 908 A 1 
HETATM 13 O O6 NAG . . . J 4 185.061 30.997 187.34 1 109.51 ? O6 NAG 908 A 1 
HETATM 14 O O7 NAG . . . J 4 182.38 36.399 183.315 1 102.51 ? O7 NAG 908 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#