data_4QI7 # _model_server_result.job_id rdcfGFEbEgFQtwO-3BfbMg _model_server_result.datetime_utc '2024-11-21 14:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":911}' # _entry.id 4QI7 # _exptl.entry_id 4QI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QI7 _cell.length_a 133.599 _cell.length_b 141.851 _cell.length_c 146.998 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 B,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 KA N N ? 5 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 129 A CYS 129 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 167 A CYS 167 1_555 A SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 303 A CYS 303 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 778 A CYS 778 1_555 A SG CYS 795 A CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 789 A CYS 789 1_555 A SG CYS 805 A CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 54 B CYS 54 1_555 B SG CYS 66 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 B SG CYS 129 B CYS 129 1_555 B SG CYS 132 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 B SG CYS 303 B CYS 303 1_555 B SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 B SG CYS 778 B CYS 778 1_555 B SG CYS 795 B CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 B SG CYS 789 B CYS 789 1_555 B SG CYS 805 B CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 119 A ASN 119 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale2 A OG1 THR 222 A THR 222 1_555 L C1 MAN . A MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 A OG1 THR 226 A THR 226 1_555 M C1 MAN . A MAN 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale4 A ND2 ASN 278 A ASN 278 1_555 F C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale5 A ND2 ASN 400 A ASN 400 1_555 G C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale6 A ND2 ASN 471 A ASN 471 1_555 H C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale7 A ND2 ASN 515 A ASN 515 1_555 I C1 NAG . A NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 A ND2 ASN 541 A ASN 541 1_555 J C1 NAG . A NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale9 A ND2 ASN 555 A ASN 555 1_555 K C1 NAG . A NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale10 B ND2 ASN 119 B ASN 119 1_555 EA C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale11 B OG1 THR 222 B THR 222 1_555 KA C1 MAN . B MAN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale12 B OG1 THR 226 B THR 226 1_555 LA C1 MAN . B MAN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale13 B ND2 ASN 278 B ASN 278 1_555 FA C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale14 B ND2 ASN 400 B ASN 400 1_555 GA C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale15 B ND2 ASN 515 B ASN 515 1_555 HA C1 NAG . B NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale16 B ND2 ASN 541 B ASN 541 1_555 IA C1 NAG . B NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale17 B ND2 ASN 555 B ASN 555 1_555 JA C1 NAG . B NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 A SD MET 74 A MET 74 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 176 A HIS 176 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A O ASP 177 A ASP 177 1_555 BA MG MG . A MG 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc4 A NZ LYS 331 A LYS 331 1_555 R PT PT . A PT 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc5 A NZ LYS 433 A LYS 433 1_555 U PT PT . A PT 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 B SD MET 74 B MET 74 1_555 CA FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 B NE2 HIS 176 B HIS 176 1_555 CA FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc8 B NZ LYS 433 B LYS 433 1_555 SA PT PT . B PT 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 389 n n C1 O1 MAN sing 390 n n C1 O5 MAN sing 391 n n C1 H1 MAN sing 392 n n C2 C3 MAN sing 393 n n C2 O2 MAN sing 394 n n C2 H2 MAN sing 395 n n C3 C4 MAN sing 396 n n C3 O3 MAN sing 397 n n C3 H3 MAN sing 398 n n C4 C5 MAN sing 399 n n C4 O4 MAN sing 400 n n C4 H4 MAN sing 401 n n C5 C6 MAN sing 402 n n C5 O5 MAN sing 403 n n C5 H5 MAN sing 404 n n C6 O6 MAN sing 405 n n C6 H61 MAN sing 406 n n C6 H62 MAN sing 407 n n O1 HO1 MAN sing 408 n n O2 HO2 MAN sing 409 n n O3 HO3 MAN sing 410 n n O4 HO4 MAN sing 411 n n O6 HO6 MAN sing 412 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4QI7 _atom_sites.fract_transf_matrix[1][1] 0.007485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 FAD A 1 902 902 FAD FAD . E 4 NAG A 1 903 911 NAG NAG . F 4 NAG A 1 904 912 NAG NAG . G 4 NAG A 1 905 913 NAG NAG . H 4 NAG A 1 906 914 NAG NAG . I 4 NAG A 1 907 915 NAG NAG . J 4 NAG A 1 908 916 NAG NAG . K 4 NAG A 1 909 917 NAG NAG . L 5 MAN A 1 910 924 MAN MAN . M 5 MAN A 1 911 911 MAN MAN . N 6 PT A 1 912 1001 PT PT . O 6 PT A 1 913 1002 PT PT . P 6 PT A 1 914 1003 PT PT . Q 6 PT A 1 915 1004 PT PT . R 6 PT A 1 916 1005 PT PT . S 6 PT A 1 917 1006 PT PT . T 6 PT A 1 918 1007 PT PT . U 6 PT A 1 919 1008 PT PT . V 6 PT A 1 920 1009 PT PT . W 6 PT A 1 921 1010 PT PT . X 6 PT A 1 922 1002 PT PT . Y 6 PT A 1 923 1009 PT PT . Z 7 MG A 1 924 1 MG MG . AA 7 MG A 1 925 3 MG MG . BA 7 MG A 1 926 4 MG MG . CA 2 HEM B 1 901 901 HEM HEM . DA 3 FAD B 1 902 902 FAD FAD . EA 4 NAG B 1 903 911 NAG NAG . FA 4 NAG B 1 904 912 NAG NAG . GA 4 NAG B 1 905 913 NAG NAG . HA 4 NAG B 1 906 915 NAG NAG . IA 4 NAG B 1 907 916 NAG NAG . JA 4 NAG B 1 908 917 NAG NAG . KA 5 MAN B 1 909 924 MAN MAN . LA 5 MAN B 1 910 910 MAN MAN . MA 6 PT B 1 911 1001 PT PT . NA 6 PT B 1 912 1003 PT PT . OA 6 PT B 1 913 1004 PT PT . PA 6 PT B 1 914 1005 PT PT . QA 6 PT B 1 915 1006 PT PT . RA 6 PT B 1 916 1007 PT PT . SA 6 PT B 1 917 1008 PT PT . TA 6 PT B 1 918 1010 PT PT . UA 7 MG B 1 919 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . M 5 119.412 5.561 178.589 1 103.73 ? C1 MAN 911 A 1 HETATM 2 C C2 MAN . . . M 5 118.098 6.034 179.292 1 107.73 ? C2 MAN 911 A 1 HETATM 3 C C3 MAN . . . M 5 118.238 5.873 180.852 1 109.93 ? C3 MAN 911 A 1 HETATM 4 C C4 MAN . . . M 5 118.95 4.519 181.279 1 89.95 ? C4 MAN 911 A 1 HETATM 5 C C5 MAN . . . M 5 120.113 4.138 180.313 1 101.98 ? C5 MAN 911 A 1 HETATM 6 C C6 MAN . . . M 5 120.706 2.748 180.587 1 107.65 ? C6 MAN 911 A 1 HETATM 7 O O2 MAN . . . M 5 116.923 5.265 178.851 1 95.74 ? O2 MAN 911 A 1 HETATM 8 O O3 MAN . . . M 5 116.974 6.059 181.569 1 108.07 ? O3 MAN 911 A 1 HETATM 9 O O4 MAN . . . M 5 119.495 4.631 182.599 1 89.01 ? O4 MAN 911 A 1 HETATM 10 O O5 MAN . . . M 5 119.688 4.229 178.922 1 91.95 ? O5 MAN 911 A 1 HETATM 11 O O6 MAN . . . M 5 121.864 2.904 181.444 1 106.43 ? O6 MAN 911 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #