data_4QID # _model_server_result.job_id AqtQ2hwsGVba4QHg2SGyvw _model_server_result.datetime_utc '2024-11-02 03:36:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4QID # _exptl.entry_id 4QID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.76 _cell.angle_gamma 90 _cell.entry_id 4QID _cell.length_a 131.939 _cell.length_b 29.799 _cell.length_c 124.973 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QID _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 224 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 224 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.45 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 334 n n C1 C6 RET sing 335 n n C1 C16 RET sing 336 n n C1 C17 RET sing 337 n n C2 C3 RET sing 338 n n C2 H21 RET sing 339 n n C2 H22 RET sing 340 n n C3 C4 RET sing 341 n n C3 H31 RET sing 342 n n C3 H32 RET sing 343 n n C4 C5 RET sing 344 n n C4 H41 RET sing 345 n n C4 H42 RET sing 346 n n C5 C6 RET doub 347 n n C5 C18 RET sing 348 n n C6 C7 RET sing 349 n n C7 C8 RET doub 350 e n C7 H7 RET sing 351 n n C8 C9 RET sing 352 n n C8 H8 RET sing 353 n n C9 C10 RET doub 354 e n C9 C19 RET sing 355 n n C10 C11 RET sing 356 n n C10 H10 RET sing 357 n n C11 C12 RET doub 358 e n C11 H11 RET sing 359 n n C12 C13 RET sing 360 n n C12 H12 RET sing 361 n n C13 C14 RET doub 362 e n C13 C20 RET sing 363 n n C14 C15 RET sing 364 n n C14 H14 RET sing 365 n n C15 O1 RET doub 366 n n C15 H15 RET sing 367 n n C16 H161 RET sing 368 n n C16 H162 RET sing 369 n n C16 H163 RET sing 370 n n C17 H171 RET sing 371 n n C17 H172 RET sing 372 n n C17 H173 RET sing 373 n n C18 H181 RET sing 374 n n C18 H182 RET sing 375 n n C18 H183 RET sing 376 n n C19 H191 RET sing 377 n n C19 H192 RET sing 378 n n C19 H193 RET sing 379 n n C20 H201 RET sing 380 n n C20 H202 RET sing 381 n n C20 H203 RET sing 382 n n # _atom_sites.entry_id 4QID _atom_sites.fract_transf_matrix[1][1] 0.007579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 260 RET RET . D 3 ACT A 1 302 302 ACT ACT . E 3 ACT A 1 303 303 ACT ACT . F 2 RET B 1 301 260 RET RET . G 4 MPG B 1 302 301 MPG MPG . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 3 HOH HOH . H 5 HOH A 3 403 4 HOH HOH . H 5 HOH A 4 404 6 HOH HOH . H 5 HOH A 5 405 8 HOH HOH . H 5 HOH A 6 406 13 HOH HOH . H 5 HOH A 7 407 14 HOH HOH . H 5 HOH A 8 408 15 HOH HOH . H 5 HOH A 9 409 17 HOH HOH . H 5 HOH A 10 410 19 HOH HOH . H 5 HOH A 11 411 20 HOH HOH . H 5 HOH A 12 412 21 HOH HOH . H 5 HOH A 13 413 22 HOH HOH . H 5 HOH A 14 414 25 HOH HOH . H 5 HOH A 15 415 27 HOH HOH . H 5 HOH A 16 416 30 HOH HOH . H 5 HOH A 17 417 32 HOH HOH . H 5 HOH A 18 418 33 HOH HOH . H 5 HOH A 19 419 37 HOH HOH . H 5 HOH A 20 420 38 HOH HOH . H 5 HOH A 21 421 41 HOH HOH . H 5 HOH A 22 422 42 HOH HOH . H 5 HOH A 23 423 43 HOH HOH . H 5 HOH A 24 424 45 HOH HOH . H 5 HOH A 25 425 46 HOH HOH . H 5 HOH A 26 426 47 HOH HOH . H 5 HOH A 27 427 49 HOH HOH . H 5 HOH A 28 428 51 HOH HOH . H 5 HOH A 29 429 52 HOH HOH . H 5 HOH A 30 430 53 HOH HOH . H 5 HOH A 31 431 55 HOH HOH . H 5 HOH A 32 432 56 HOH HOH . H 5 HOH A 33 433 58 HOH HOH . H 5 HOH A 34 434 59 HOH HOH . H 5 HOH A 35 435 61 HOH HOH . H 5 HOH A 36 436 62 HOH HOH . H 5 HOH A 37 437 64 HOH HOH . H 5 HOH A 38 438 65 HOH HOH . H 5 HOH A 39 439 68 HOH HOH . H 5 HOH A 40 440 69 HOH HOH . H 5 HOH A 41 441 70 HOH HOH . H 5 HOH A 42 442 116 HOH HOH . H 5 HOH A 43 443 117 HOH HOH . H 5 HOH A 44 444 125 HOH HOH . H 5 HOH A 45 445 126 HOH HOH . H 5 HOH A 46 446 127 HOH HOH . H 5 HOH A 47 447 129 HOH HOH . H 5 HOH A 48 448 130 HOH HOH . H 5 HOH A 49 449 131 HOH HOH . H 5 HOH A 50 450 132 HOH HOH . H 5 HOH A 51 451 134 HOH HOH . H 5 HOH A 52 452 141 HOH HOH . H 5 HOH A 53 453 144 HOH HOH . H 5 HOH A 54 454 146 HOH HOH . H 5 HOH A 55 455 147 HOH HOH . H 5 HOH A 56 456 154 HOH HOH . H 5 HOH A 57 457 157 HOH HOH . I 5 HOH B 1 401 9 HOH HOH . I 5 HOH B 2 402 26 HOH HOH . I 5 HOH B 3 403 29 HOH HOH . I 5 HOH B 4 404 31 HOH HOH . I 5 HOH B 5 405 74 HOH HOH . I 5 HOH B 6 406 75 HOH HOH . I 5 HOH B 7 407 76 HOH HOH . I 5 HOH B 8 408 78 HOH HOH . I 5 HOH B 9 409 79 HOH HOH . I 5 HOH B 10 410 80 HOH HOH . I 5 HOH B 11 411 82 HOH HOH . I 5 HOH B 12 412 83 HOH HOH . I 5 HOH B 13 413 84 HOH HOH . I 5 HOH B 14 414 87 HOH HOH . I 5 HOH B 15 415 89 HOH HOH . I 5 HOH B 16 416 91 HOH HOH . I 5 HOH B 17 417 93 HOH HOH . I 5 HOH B 18 418 94 HOH HOH . I 5 HOH B 19 419 95 HOH HOH . I 5 HOH B 20 420 96 HOH HOH . I 5 HOH B 21 421 98 HOH HOH . I 5 HOH B 22 422 100 HOH HOH . I 5 HOH B 23 423 101 HOH HOH . I 5 HOH B 24 424 104 HOH HOH . I 5 HOH B 25 425 108 HOH HOH . I 5 HOH B 26 426 109 HOH HOH . I 5 HOH B 27 427 110 HOH HOH . I 5 HOH B 28 428 113 HOH HOH . I 5 HOH B 29 429 114 HOH HOH . I 5 HOH B 30 430 115 HOH HOH . I 5 HOH B 31 431 119 HOH HOH . I 5 HOH B 32 432 122 HOH HOH . I 5 HOH B 33 433 123 HOH HOH . I 5 HOH B 34 434 124 HOH HOH . I 5 HOH B 35 435 136 HOH HOH . I 5 HOH B 36 436 137 HOH HOH . I 5 HOH B 37 437 139 HOH HOH . I 5 HOH B 38 438 140 HOH HOH . I 5 HOH B 39 439 149 HOH HOH . I 5 HOH B 40 440 152 HOH HOH . I 5 HOH B 41 441 153 HOH HOH . I 5 HOH B 42 442 155 HOH HOH . I 5 HOH B 43 443 156 HOH HOH . I 5 HOH B 44 444 158 HOH HOH . I 5 HOH B 45 445 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . F 2 9.182 -8.58 24.824 1 42.06 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . F 2 9.983 -7.477 24.167 1 43.98 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . F 2 11.464 -7.798 24.253 1 43.53 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . F 2 11.912 -7.914 25.689 1 47.03 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . F 2 11.03 -8.788 26.521 1 39.04 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . F 2 9.729 -9.017 26.206 1 46.22 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . F 2 8.994 -9.839 27.188 1 40.99 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . F 2 7.692 -9.94 27.27 1 39.38 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . F 2 7.014 -10.746 28.271 1 41.64 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . F 2 5.707 -10.951 28.083 1 44.42 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . F 2 4.903 -11.802 28.949 1 48.33 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . F 2 3.619 -11.969 28.661 1 56.89 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . F 2 2.692 -12.825 29.434 1 50.83 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . F 2 1.419 -12.866 29.051 1 52.12 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . F 2 0.414 -13.699 29.728 1 59.64 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . F 2 7.716 -8.373 24.534 1 32.81 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . F 2 9.419 -9.828 24.116 1 41.45 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . F 2 11.714 -9.343 27.724 1 35.37 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . F 2 7.8 -11.377 29.354 1 39.93 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . F 2 3.146 -13.642 30.604 1 46.05 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #