data_4QID # _model_server_result.job_id tV_zVXvH2S9LE8Oe0AEv4g _model_server_result.datetime_utc '2024-11-02 03:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4QID # _exptl.entry_id 4QID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.76 _cell.angle_gamma 90 _cell.entry_id 4QID _cell.length_a 131.939 _cell.length_b 29.799 _cell.length_c 124.973 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QID _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 224 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 224 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.45 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 230 n n C2 C1 MPG sing 231 n n C3 C4 MPG sing 232 n n C4 C5 MPG sing 233 n n C5 C6 MPG sing 234 n n C6 C7 MPG sing 235 n n C7 C8 MPG sing 236 n n C8 C9 MPG sing 237 n n C9 C10 MPG doub 238 z n C10 C11 MPG sing 239 n n C11 C12 MPG sing 240 n n C12 C13 MPG sing 241 n n C13 C14 MPG sing 242 n n C14 C15 MPG sing 243 n n C15 C16 MPG sing 244 n n C16 C17 MPG sing 245 n n C17 C18 MPG sing 246 n n O1 C1 MPG sing 247 n n O1 CX3 MPG sing 248 n n CXD O2 MPG sing 249 n n CXD C21 MPG sing 250 n n CXD CX3 MPG sing 251 n n C21 O3 MPG sing 252 n n C2 H21C MPG sing 253 n n C2 H22C MPG sing 254 n n C3 H31C MPG sing 255 n n C3 H32C MPG sing 256 n n CX3 O4 MPG doub 257 n n C4 H41C MPG sing 258 n n C4 H42C MPG sing 259 n n C5 H51C MPG sing 260 n n C5 H52C MPG sing 261 n n C6 H61C MPG sing 262 n n C6 H62C MPG sing 263 n n C7 H71C MPG sing 264 n n C7 H72C MPG sing 265 n n C8 H81C MPG sing 266 n n C8 H82C MPG sing 267 n n C9 H9 MPG sing 268 n n C10 H10 MPG sing 269 n n C11 H111 MPG sing 270 n n C11 H112 MPG sing 271 n n C12 H121 MPG sing 272 n n C12 H122 MPG sing 273 n n C13 H131 MPG sing 274 n n C13 H132 MPG sing 275 n n C14 H141 MPG sing 276 n n C14 H142 MPG sing 277 n n C15 H151 MPG sing 278 n n C15 H152 MPG sing 279 n n C16 H161 MPG sing 280 n n C16 H162 MPG sing 281 n n C17 H171 MPG sing 282 n n C17 H172 MPG sing 283 n n C18 H181 MPG sing 284 n n C18 H182 MPG sing 285 n n C18 H183 MPG sing 286 n n C1 HX31 MPG sing 287 n n C1 HX32 MPG sing 288 n n CXD HXD MPG sing 289 n n O2 H2 MPG sing 290 n n C21 H211 MPG sing 291 n n C21 H212 MPG sing 292 n n O3 H3 MPG sing 293 n n # _atom_sites.entry_id 4QID _atom_sites.fract_transf_matrix[1][1] 0.007579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 260 RET RET . D 3 ACT A 1 302 302 ACT ACT . E 3 ACT A 1 303 303 ACT ACT . F 2 RET B 1 301 260 RET RET . G 4 MPG B 1 302 301 MPG MPG . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 3 HOH HOH . H 5 HOH A 3 403 4 HOH HOH . H 5 HOH A 4 404 6 HOH HOH . H 5 HOH A 5 405 8 HOH HOH . H 5 HOH A 6 406 13 HOH HOH . H 5 HOH A 7 407 14 HOH HOH . H 5 HOH A 8 408 15 HOH HOH . H 5 HOH A 9 409 17 HOH HOH . H 5 HOH A 10 410 19 HOH HOH . H 5 HOH A 11 411 20 HOH HOH . H 5 HOH A 12 412 21 HOH HOH . H 5 HOH A 13 413 22 HOH HOH . H 5 HOH A 14 414 25 HOH HOH . H 5 HOH A 15 415 27 HOH HOH . H 5 HOH A 16 416 30 HOH HOH . H 5 HOH A 17 417 32 HOH HOH . H 5 HOH A 18 418 33 HOH HOH . H 5 HOH A 19 419 37 HOH HOH . H 5 HOH A 20 420 38 HOH HOH . H 5 HOH A 21 421 41 HOH HOH . H 5 HOH A 22 422 42 HOH HOH . H 5 HOH A 23 423 43 HOH HOH . H 5 HOH A 24 424 45 HOH HOH . H 5 HOH A 25 425 46 HOH HOH . H 5 HOH A 26 426 47 HOH HOH . H 5 HOH A 27 427 49 HOH HOH . H 5 HOH A 28 428 51 HOH HOH . H 5 HOH A 29 429 52 HOH HOH . H 5 HOH A 30 430 53 HOH HOH . H 5 HOH A 31 431 55 HOH HOH . H 5 HOH A 32 432 56 HOH HOH . H 5 HOH A 33 433 58 HOH HOH . H 5 HOH A 34 434 59 HOH HOH . H 5 HOH A 35 435 61 HOH HOH . H 5 HOH A 36 436 62 HOH HOH . H 5 HOH A 37 437 64 HOH HOH . H 5 HOH A 38 438 65 HOH HOH . H 5 HOH A 39 439 68 HOH HOH . H 5 HOH A 40 440 69 HOH HOH . H 5 HOH A 41 441 70 HOH HOH . H 5 HOH A 42 442 116 HOH HOH . H 5 HOH A 43 443 117 HOH HOH . H 5 HOH A 44 444 125 HOH HOH . H 5 HOH A 45 445 126 HOH HOH . H 5 HOH A 46 446 127 HOH HOH . H 5 HOH A 47 447 129 HOH HOH . H 5 HOH A 48 448 130 HOH HOH . H 5 HOH A 49 449 131 HOH HOH . H 5 HOH A 50 450 132 HOH HOH . H 5 HOH A 51 451 134 HOH HOH . H 5 HOH A 52 452 141 HOH HOH . H 5 HOH A 53 453 144 HOH HOH . H 5 HOH A 54 454 146 HOH HOH . H 5 HOH A 55 455 147 HOH HOH . H 5 HOH A 56 456 154 HOH HOH . H 5 HOH A 57 457 157 HOH HOH . I 5 HOH B 1 401 9 HOH HOH . I 5 HOH B 2 402 26 HOH HOH . I 5 HOH B 3 403 29 HOH HOH . I 5 HOH B 4 404 31 HOH HOH . I 5 HOH B 5 405 74 HOH HOH . I 5 HOH B 6 406 75 HOH HOH . I 5 HOH B 7 407 76 HOH HOH . I 5 HOH B 8 408 78 HOH HOH . I 5 HOH B 9 409 79 HOH HOH . I 5 HOH B 10 410 80 HOH HOH . I 5 HOH B 11 411 82 HOH HOH . I 5 HOH B 12 412 83 HOH HOH . I 5 HOH B 13 413 84 HOH HOH . I 5 HOH B 14 414 87 HOH HOH . I 5 HOH B 15 415 89 HOH HOH . I 5 HOH B 16 416 91 HOH HOH . I 5 HOH B 17 417 93 HOH HOH . I 5 HOH B 18 418 94 HOH HOH . I 5 HOH B 19 419 95 HOH HOH . I 5 HOH B 20 420 96 HOH HOH . I 5 HOH B 21 421 98 HOH HOH . I 5 HOH B 22 422 100 HOH HOH . I 5 HOH B 23 423 101 HOH HOH . I 5 HOH B 24 424 104 HOH HOH . I 5 HOH B 25 425 108 HOH HOH . I 5 HOH B 26 426 109 HOH HOH . I 5 HOH B 27 427 110 HOH HOH . I 5 HOH B 28 428 113 HOH HOH . I 5 HOH B 29 429 114 HOH HOH . I 5 HOH B 30 430 115 HOH HOH . I 5 HOH B 31 431 119 HOH HOH . I 5 HOH B 32 432 122 HOH HOH . I 5 HOH B 33 433 123 HOH HOH . I 5 HOH B 34 434 124 HOH HOH . I 5 HOH B 35 435 136 HOH HOH . I 5 HOH B 36 436 137 HOH HOH . I 5 HOH B 37 437 139 HOH HOH . I 5 HOH B 38 438 140 HOH HOH . I 5 HOH B 39 439 149 HOH HOH . I 5 HOH B 40 440 152 HOH HOH . I 5 HOH B 41 441 153 HOH HOH . I 5 HOH B 42 442 155 HOH HOH . I 5 HOH B 43 443 156 HOH HOH . I 5 HOH B 44 444 158 HOH HOH . I 5 HOH B 45 445 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . G 4 9.099 -24.636 50.666 1 53.31 ? C2 MPG 302 B 1 HETATM 2 C C3 MPG . . . G 4 8.863 -25.885 49.827 1 42.6 ? C3 MPG 302 B 1 HETATM 3 C C4 MPG . . . G 4 8.335 -25.593 48.431 1 44.82 ? C4 MPG 302 B 1 HETATM 4 C C5 MPG . . . G 4 9.495 -25.441 47.451 1 47.99 ? C5 MPG 302 B 1 HETATM 5 C C6 MPG . . . G 4 9.378 -26.329 46.211 1 51.36 ? C6 MPG 302 B 1 HETATM 6 C C7 MPG . . . G 4 7.984 -26.345 45.576 1 47.05 ? C7 MPG 302 B 1 HETATM 7 C C8 MPG . . . G 4 7.997 -27.19 44.322 1 44.69 ? C8 MPG 302 B 1 HETATM 8 C C9 MPG . . . G 4 6.553 -27.317 43.853 1 45.89 ? C9 MPG 302 B 1 HETATM 9 C C10 MPG . . . G 4 6.272 -27.211 42.554 1 45.58 ? C10 MPG 302 B 1 HETATM 10 C C11 MPG . . . G 4 7.393 -26.999 41.54 1 44.02 ? C11 MPG 302 B 1 HETATM 11 C C12 MPG . . . G 4 6.862 -26.472 40.229 1 48.6 ? C12 MPG 302 B 1 HETATM 12 C C13 MPG . . . G 4 5.874 -27.383 39.549 1 57.58 ? C13 MPG 302 B 1 HETATM 13 C C14 MPG . . . G 4 4.473 -26.779 39.427 1 61.75 ? C14 MPG 302 B 1 HETATM 14 C C15 MPG . . . G 4 3.897 -27.013 38.03 1 66.31 ? C15 MPG 302 B 1 HETATM 15 C C16 MPG . . . G 4 2.554 -27.745 38.062 1 67.83 ? C16 MPG 302 B 1 HETATM 16 C C17 MPG . . . G 4 2.104 -28.232 36.677 1 58.9 ? C17 MPG 302 B 1 HETATM 17 C C18 MPG . . . G 4 2.125 -27.161 35.6 1 53.01 ? C18 MPG 302 B 1 HETATM 18 O O1 MPG . . . G 4 10.396 -22.676 51.013 1 71.99 ? O1 MPG 302 B 1 HETATM 19 C C1 MPG . . . G 4 10.452 -23.995 50.49 1 60.42 ? C1 MPG 302 B 1 HETATM 20 C CXD MPG . . . G 4 10.411 -20.3 50.118 1 71.69 ? CXD MPG 302 B 1 HETATM 21 O O2 MPG . . . G 4 9.247 -20.492 49.301 1 71.57 ? O2 MPG 302 B 1 HETATM 22 C C21 MPG . . . G 4 11.324 -19.298 49.451 1 72.22 ? C21 MPG 302 B 1 HETATM 23 O O3 MPG . . . G 4 10.695 -18.879 48.243 1 67.75 ? O3 MPG 302 B 1 HETATM 24 C CX3 MPG . . . G 4 11.109 -21.605 50.322 1 72.67 ? CX3 MPG 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #