data_4QIM # _model_server_result.job_id o7koQ47P4oPhsOJo19X3pg _model_server_result.datetime_utc '2024-12-02 21:10:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4QIM # _exptl.entry_id 4QIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 439.552 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{6-[4-(4-benzylphthalazin-1-yl)piperazin-1-yl]pyridin-3-yl}propan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4QIM _cell.length_a 42.83 _cell.length_b 79.84 _cell.length_c 170.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 193 1_555 A SG CYS 27 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 31 A CYS 217 1_555 A SG CYS 109 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 128 A CYS 314 1_555 A SG CYS 204 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 403 A CYS 490 1_555 A SG CYS 420 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A NE2 HIS 247 A HIS 433 1_555 C ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 C ZN ZN . A ZN 1202 1_555 D O HOH . A HOH 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 C ZN ZN . A ZN 1202 1_555 D O HOH . A HOH 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C27 H29 N5 O' _chem_comp.formula_weight 439.552 _chem_comp.id A8T _chem_comp.mon_nstd_flag . _chem_comp.name 2-{6-[4-(4-benzylphthalazin-1-yl)piperazin-1-yl]pyridin-3-yl}propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 A8T doub 1 n y C26 C27 A8T sing 2 n y C25 C24 A8T sing 3 n y C27 C22 A8T doub 4 n y C24 C23 A8T doub 5 n y C22 C23 A8T sing 6 n y C22 C21 A8T sing 7 n n C21 C16 A8T sing 8 n n C20 C19 A8T doub 9 n y C20 C15 A8T sing 10 n y C16 C15 A8T doub 11 n y C16 N4 A8T sing 12 n y C19 C18 A8T sing 13 n y C15 C14 A8T sing 14 n y N4 N5 A8T doub 15 n y C18 C17 A8T doub 16 n y N5 C10 A8T sing 17 n y C14 C17 A8T sing 18 n y C14 C10 A8T doub 19 n y C10 N3 A8T sing 20 n n N3 C8 A8T sing 21 n n N3 C7 A8T sing 22 n n C8 C9 A8T sing 23 n n C7 C6 A8T sing 24 n n C9 N2 A8T sing 25 n n C6 N2 A8T sing 26 n n N2 C4 A8T sing 27 n n C4 C5 A8T doub 28 n y C4 N1 A8T sing 29 n y C5 C1 A8T sing 30 n y N1 C3 A8T doub 31 n y C1 C2 A8T doub 32 n y C3 C2 A8T sing 33 n y C2 C11 A8T sing 34 n n C11 C13 A8T sing 35 n n C11 O1 A8T sing 36 n n C11 C12 A8T sing 37 n n C12 H1 A8T sing 38 n n C12 H2 A8T sing 39 n n C12 H3 A8T sing 40 n n C13 H4 A8T sing 41 n n C13 H5 A8T sing 42 n n C13 H6 A8T sing 43 n n O1 H7 A8T sing 44 n n C3 H8 A8T sing 45 n n C1 H9 A8T sing 46 n n C5 H10 A8T sing 47 n n C9 H11 A8T sing 48 n n C9 H12 A8T sing 49 n n C8 H13 A8T sing 50 n n C8 H14 A8T sing 51 n n C6 H15 A8T sing 52 n n C6 H16 A8T sing 53 n n C7 H17 A8T sing 54 n n C7 H18 A8T sing 55 n n C17 H19 A8T sing 56 n n C18 H20 A8T sing 57 n n C19 H21 A8T sing 58 n n C20 H22 A8T sing 59 n n C21 H23 A8T sing 60 n n C21 H24 A8T sing 61 n n C23 H25 A8T sing 62 n n C24 H26 A8T sing 63 n n C25 H27 A8T sing 64 n n C26 H28 A8T sing 65 n n C27 H29 A8T sing 66 n n # _atom_sites.entry_id 4QIM _atom_sites.fract_transf_matrix[1][1] 0.023348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A8T A 1 1201 1 A8T RES . C 3 ZN A 1 1202 1 ZN ZN . D 4 HOH A 1 1301 1 HOH HOH . D 4 HOH A 2 1302 2 HOH HOH . D 4 HOH A 3 1303 5 HOH HOH . D 4 HOH A 4 1304 6 HOH HOH . D 4 HOH A 5 1305 7 HOH HOH . D 4 HOH A 6 1306 9 HOH HOH . D 4 HOH A 7 1307 10 HOH HOH . D 4 HOH A 8 1308 11 HOH HOH . D 4 HOH A 9 1309 12 HOH HOH . D 4 HOH A 10 1310 21 HOH HOH . D 4 HOH A 11 1311 22 HOH HOH . D 4 HOH A 12 1312 23 HOH HOH . D 4 HOH A 13 1313 24 HOH HOH . D 4 HOH A 14 1314 25 HOH HOH . D 4 HOH A 15 1315 26 HOH HOH . D 4 HOH A 16 1316 27 HOH HOH . D 4 HOH A 17 1317 28 HOH HOH . D 4 HOH A 18 1318 29 HOH HOH . D 4 HOH A 19 1319 30 HOH HOH . D 4 HOH A 20 1320 31 HOH HOH . D 4 HOH A 21 1321 33 HOH HOH . D 4 HOH A 22 1322 34 HOH HOH . D 4 HOH A 23 1323 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A8T . . . B 2 14.929 -12.029 -13.751 1 66.87 ? C12 A8T 1201 A 1 HETATM 2 C C11 A8T . . . B 2 14.532 -10.825 -14.515 1 68.74 ? C11 A8T 1201 A 1 HETATM 3 C C13 A8T . . . B 2 15.637 -9.764 -14.469 1 67.73 ? C13 A8T 1201 A 1 HETATM 4 O O1 A8T . . . B 2 13.403 -10.326 -13.91 1 70.37 ? O1 A8T 1201 A 1 HETATM 5 C C2 A8T . . . B 2 14.211 -11.126 -15.975 1 70.65 ? C2 A8T 1201 A 1 HETATM 6 C C3 A8T . . . B 2 14.74 -12.274 -16.632 1 71.11 ? C3 A8T 1201 A 1 HETATM 7 N N1 A8T . . . B 2 14.467 -12.664 -17.906 1 72.05 ? N1 A8T 1201 A 1 HETATM 8 C C1 A8T . . . B 2 13.385 -10.316 -16.794 1 70.41 ? C1 A8T 1201 A 1 HETATM 9 C C5 A8T . . . B 2 13.12 -10.691 -18.126 1 71.15 ? C5 A8T 1201 A 1 HETATM 10 C C4 A8T . . . B 2 13.676 -11.884 -18.684 1 73.34 ? C4 A8T 1201 A 1 HETATM 11 N N2 A8T . . . B 2 13.467 -12.253 -20.102 1 74.15 ? N2 A8T 1201 A 1 HETATM 12 C C9 A8T . . . B 2 14.558 -12.99 -20.71 1 73.95 ? C9 A8T 1201 A 1 HETATM 13 C C8 A8T . . . B 2 14.481 -12.964 -22.205 1 74.33 ? C8 A8T 1201 A 1 HETATM 14 C C6 A8T . . . B 2 12.11 -12.581 -20.547 1 74.02 ? C6 A8T 1201 A 1 HETATM 15 C C7 A8T . . . B 2 12.037 -12.569 -22.067 1 74.46 ? C7 A8T 1201 A 1 HETATM 16 N N3 A8T . . . B 2 13.121 -13.343 -22.68 1 73.66 ? N3 A8T 1201 A 1 HETATM 17 C C10 A8T . . . B 2 13.036 -13.522 -24.143 1 71.45 ? C10 A8T 1201 A 1 HETATM 18 N N5 A8T . . . B 2 12.412 -12.571 -24.867 1 71.44 ? N5 A8T 1201 A 1 HETATM 19 N N4 A8T . . . B 2 12.33 -12.603 -26.201 1 70.92 ? N4 A8T 1201 A 1 HETATM 20 C C14 A8T . . . B 2 13.647 -14.674 -24.843 1 68.54 ? C14 A8T 1201 A 1 HETATM 21 C C17 A8T . . . B 2 14.348 -15.703 -24.176 1 66.09 ? C17 A8T 1201 A 1 HETATM 22 C C18 A8T . . . B 2 14.919 -16.783 -24.908 1 67.07 ? C18 A8T 1201 A 1 HETATM 23 C C19 A8T . . . B 2 14.847 -16.827 -26.298 1 68.46 ? C19 A8T 1201 A 1 HETATM 24 C C20 A8T . . . B 2 14.195 -15.773 -26.987 1 68.57 ? C20 A8T 1201 A 1 HETATM 25 C C15 A8T . . . B 2 13.57 -14.698 -26.284 1 69.75 ? C15 A8T 1201 A 1 HETATM 26 C C16 A8T . . . B 2 12.853 -13.612 -26.925 1 72.33 ? C16 A8T 1201 A 1 HETATM 27 C C21 A8T . . . B 2 12.612 -13.55 -28.475 1 74.95 ? C21 A8T 1201 A 1 HETATM 28 C C22 A8T . . . B 2 13.524 -12.549 -29.192 1 75.8 ? C22 A8T 1201 A 1 HETATM 29 C C23 A8T . . . B 2 14.689 -12.079 -28.609 1 75.37 ? C23 A8T 1201 A 1 HETATM 30 C C24 A8T . . . B 2 15.552 -11.092 -29.368 1 75.23 ? C24 A8T 1201 A 1 HETATM 31 C C25 A8T . . . B 2 15.187 -10.711 -30.651 1 75.08 ? C25 A8T 1201 A 1 HETATM 32 C C26 A8T . . . B 2 13.932 -11.245 -31.286 1 73.95 ? C26 A8T 1201 A 1 HETATM 33 C C27 A8T . . . B 2 13.135 -12.136 -30.598 1 73.63 ? C27 A8T 1201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #