data_4QIN # _model_server_result.job_id qexisuVSrljzfWQ_jxf8aQ _model_server_result.datetime_utc '2025-07-19 17:36:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4QIN # _exptl.entry_id 4QIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 526.04 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-chloro-4,7-difluoro-N-[trans-4-(methylamino)cyclohexyl]-N-[3-(pyridin-4-yl)benzyl]-1-benzothiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.26 _cell.angle_gamma 90 _cell.entry_id 4QIN _cell.length_a 72.22 _cell.length_b 158.93 _cell.length_c 60.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -72.22 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 193 1_555 A SG CYS 27 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 31 A CYS 217 1_555 A SG CYS 109 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 128 A CYS 314 1_555 A SG CYS 204 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 403 A CYS 490 1_555 A SG CYS 420 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C28 H26 Cl F2 N3 O S' _chem_comp.formula_weight 526.04 _chem_comp.id SG8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-chloro-4,7-difluoro-N-[trans-4-(methylamino)cyclohexyl]-N-[3-(pyridin-4-yl)benzyl]-1-benzothiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 SG8 doub 290 n y C14 C13 SG8 sing 291 n y C15 C16 SG8 sing 292 n y C13 C12 SG8 doub 293 n y C27 C26 SG8 doub 294 n y C27 C28 SG8 sing 295 n y F1 C4 SG8 sing 296 n n C26 N3 SG8 sing 297 n y C16 C28 SG8 sing 298 n n C16 C17 SG8 doub 299 n y C28 C24 SG8 doub 300 n y S1 C5 SG8 sing 301 n y S1 C7 SG8 sing 302 n y C12 C17 SG8 sing 303 n y C12 C10 SG8 sing 304 n n C4 C5 SG8 doub 305 n y C4 C3 SG8 sing 306 n y C22 C21 SG8 sing 307 n n C22 C11 SG8 sing 308 n n N3 C25 SG8 doub 309 n y C21 C20 SG8 sing 310 n n C5 C6 SG8 sing 311 n y C3 C2 SG8 doub 312 n y C24 C25 SG8 sing 313 n y C7 C9 SG8 sing 314 n n C7 C8 SG8 doub 315 n y C10 N1 SG8 sing 316 n n C9 N1 SG8 sing 317 n n C9 O1 SG8 doub 318 n n N1 C11 SG8 sing 319 n n C11 C18 SG8 sing 320 n n C20 N2 SG8 sing 321 n n C20 C19 SG8 sing 322 n n N2 C23 SG8 sing 323 n n C6 C8 SG8 sing 324 n y C6 C1 SG8 doub 325 n y C2 C1 SG8 sing 326 n y C8 CL1 SG8 sing 327 n n C1 F2 SG8 sing 328 n n C18 C19 SG8 sing 329 n n C3 H1 SG8 sing 330 n n C2 H2 SG8 sing 331 n n C10 H3 SG8 sing 332 n n C10 H4 SG8 sing 333 n n C11 H5 SG8 sing 334 n n C13 H6 SG8 sing 335 n n C14 H7 SG8 sing 336 n n C15 H8 SG8 sing 337 n n C17 H9 SG8 sing 338 n n C18 H10 SG8 sing 339 n n C18 H11 SG8 sing 340 n n C19 H12 SG8 sing 341 n n C19 H13 SG8 sing 342 n n N2 H14 SG8 sing 343 n n C20 H16 SG8 sing 344 n n C21 H17 SG8 sing 345 n n C21 H18 SG8 sing 346 n n C22 H19 SG8 sing 347 n n C22 H20 SG8 sing 348 n n C23 H21 SG8 sing 349 n n C23 H22 SG8 sing 350 n n C23 H23 SG8 sing 351 n n C24 H24 SG8 sing 352 n n C25 H25 SG8 sing 353 n n C26 H26 SG8 sing 354 n n C27 H27 SG8 sing 355 n n # _atom_sites.entry_id 4QIN _atom_sites.fract_transf_matrix[1][1] 0.013847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000063 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SG8 A 1 1201 1 SG8 RES . C 3 HOH A 1 1301 1 HOH HOH . C 3 HOH A 2 1302 2 HOH HOH . C 3 HOH A 3 1303 3 HOH HOH . C 3 HOH A 4 1304 4 HOH HOH . C 3 HOH A 5 1305 5 HOH HOH . C 3 HOH A 6 1306 6 HOH HOH . C 3 HOH A 7 1307 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SG8 . . . B 2 -21.066 67.055 -2.253 1 47.14 ? C4 SG8 1201 A 1 HETATM 2 C C3 SG8 . . . B 2 -21.797 67.927 -1.477 1 46.72 ? C3 SG8 1201 A 1 HETATM 3 C C2 SG8 . . . B 2 -22.142 67.576 -0.156 1 47.12 ? C2 SG8 1201 A 1 HETATM 4 C C1 SG8 . . . B 2 -21.751 66.336 0.353 1 48.07 ? C1 SG8 1201 A 1 HETATM 5 O O1 SG8 . . . B 2 -18.099 62.005 -1.091 1 50.44 ? O1 SG8 1201 A 1 HETATM 6 CL CL1 SG8 . . . B 2 -20.788 63.301 1.381 1 54.11 ? CL1 SG8 1201 A 1 HETATM 7 F F1 SG8 . . . B 2 -20.721 67.385 -3.496 1 47.23 ? F1 SG8 1201 A 1 HETATM 8 S S1 SG8 . . . B 2 -19.801 64.571 -2.576 1 53.31 ? S1 SG8 1201 A 1 HETATM 9 N N1 SG8 . . . B 2 -20.158 60.873 -1.125 1 41.96 ? N1 SG8 1201 A 1 HETATM 10 C C10 SG8 . . . B 2 -21.612 60.891 -1.192 1 37.23 ? C10 SG8 1201 A 1 HETATM 11 C C11 SG8 . . . B 2 -19.539 59.498 -0.974 1 43.96 ? C11 SG8 1201 A 1 HETATM 12 C C12 SG8 . . . B 2 -22.108 61.817 -2.369 1 30.45 ? C12 SG8 1201 A 1 HETATM 13 C C13 SG8 . . . B 2 -21.68 61.632 -3.672 1 27.17 ? C13 SG8 1201 A 1 HETATM 14 C C14 SG8 . . . B 2 -22.108 62.579 -4.769 1 20.03 ? C14 SG8 1201 A 1 HETATM 15 C C15 SG8 . . . B 2 -22.94 63.629 -4.443 1 21.81 ? C15 SG8 1201 A 1 HETATM 16 C C16 SG8 . . . B 2 -23.37 63.89 -3.006 1 26.07 ? C16 SG8 1201 A 1 HETATM 17 C C17 SG8 . . . B 2 -22.999 63 -2.027 1 27.04 ? C17 SG8 1201 A 1 HETATM 18 C C18 SG8 . . . B 2 -19.811 58.835 0.435 1 44.97 ? C18 SG8 1201 A 1 HETATM 19 C C19 SG8 . . . B 2 -19.524 57.339 0.528 1 46.66 ? C19 SG8 1201 A 1 HETATM 20 F F2 SG8 . . . B 2 -22.071 66.015 1.591 1 48.55 ? F2 SG8 1201 A 1 HETATM 21 N N2 SG8 . . . B 2 -19.761 55.085 -0.465 1 52.2 ? N2 SG8 1201 A 1 HETATM 22 C C20 SG8 . . . B 2 -19.865 56.531 -0.733 1 48.81 ? C20 SG8 1201 A 1 HETATM 23 C C21 SG8 . . . B 2 -19.153 57.146 -1.937 1 46.06 ? C21 SG8 1201 A 1 HETATM 24 C C22 SG8 . . . B 2 -19.573 58.58 -2.211 1 45.86 ? C22 SG8 1201 A 1 HETATM 25 C C23 SG8 . . . B 2 -21.1 54.46 -0.388 1 51.95 ? C23 SG8 1201 A 1 HETATM 26 C C24 SG8 . . . B 2 -24.594 65.339 -1.228 1 29.63 ? C24 SG8 1201 A 1 HETATM 27 C C25 SG8 . . . B 2 -25.345 66.424 -0.894 1 28.93 ? C25 SG8 1201 A 1 HETATM 28 C C26 SG8 . . . B 2 -25.517 67.115 -3.252 1 30.17 ? C26 SG8 1201 A 1 HETATM 29 C C27 SG8 . . . B 2 -24.672 65.933 -3.61 1 30.5 ? C27 SG8 1201 A 1 HETATM 30 C C28 SG8 . . . B 2 -24.231 65.075 -2.643 1 28.37 ? C28 SG8 1201 A 1 HETATM 31 N N3 SG8 . . . B 2 -25.841 67.33 -1.97 1 29.6 ? N3 SG8 1201 A 1 HETATM 32 C C5 SG8 . . . B 2 -20.706 65.801 -1.735 1 48.49 ? C5 SG8 1201 A 1 HETATM 33 C C6 SG8 . . . B 2 -21.033 65.413 -0.426 1 47.93 ? C6 SG8 1201 A 1 HETATM 34 C C7 SG8 . . . B 2 -19.828 63.528 -1.198 1 50.04 ? C7 SG8 1201 A 1 HETATM 35 C C8 SG8 . . . B 2 -20.517 64.111 -0.122 1 50.22 ? C8 SG8 1201 A 1 HETATM 36 C C9 SG8 . . . B 2 -19.295 62.092 -1.133 1 47.34 ? C9 SG8 1201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #