data_4QJ1 # _model_server_result.job_id NNpVbs5RIe3SjhutAjdcyw _model_server_result.datetime_utc '2025-01-27 16:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4QJ1 # _exptl.entry_id 4QJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.24 _cell.angle_gamma 90 _cell.entry_id 4QJ1 _cell.length_a 90.412 _cell.length_b 92.337 _cell.length_c 91.914 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 K N N ? 2 M N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 193 n n P O2P IMP sing 194 n n P O3P IMP sing 195 n n P O5' IMP sing 196 n n O2P HOP2 IMP sing 197 n n O3P HOP3 IMP sing 198 n n O5' C5' IMP sing 199 n n C5' C4' IMP sing 200 n n C5' "H5'1" IMP sing 201 n n C5' "H5'2" IMP sing 202 n n C4' O4' IMP sing 203 n n C4' C3' IMP sing 204 n n C4' H4' IMP sing 205 n n O4' C1' IMP sing 206 n n C3' O3' IMP sing 207 n n C3' C2' IMP sing 208 n n C3' H3' IMP sing 209 n n O3' HO3' IMP sing 210 n n C2' O2' IMP sing 211 n n C2' C1' IMP sing 212 n n C2' H2' IMP sing 213 n n O2' HO2' IMP sing 214 n n C1' N9 IMP sing 215 n n C1' H1' IMP sing 216 n n N9 C8 IMP sing 217 n y N9 C4 IMP sing 218 n y C8 N7 IMP doub 219 n y C8 H8 IMP sing 220 n n N7 C5 IMP sing 221 n y C5 C6 IMP sing 222 n n C5 C4 IMP doub 223 n y C6 O6 IMP doub 224 n n C6 N1 IMP sing 225 n n N1 C2 IMP sing 226 n n N1 HN1 IMP sing 227 n n C2 N3 IMP doub 228 n n C2 H2 IMP sing 229 n n N3 C4 IMP sing 230 n n # _atom_sites.entry_id 4QJ1 _atom_sites.fract_transf_matrix[1][1] 0.01106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002806 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 501 420 IMP IMP . F 3 N09 A 1 502 421 N09 N09 . G 2 IMP B 1 501 420 IMP IMP . H 3 N09 B 1 502 421 N09 N09 . I 3 N09 B 1 503 421 N09 N09 . J 4 ACY B 1 504 422 ACY ACY . K 2 IMP C 1 501 420 IMP IMP . L 5 EDO C 1 502 422 EDO EDO . M 2 IMP D 1 501 420 IMP IMP . N 3 N09 D 1 502 421 N09 N09 . O 5 EDO D 1 503 422 EDO EDO . P 6 FMT D 1 504 423 FMT FMT . Q 5 EDO D 1 505 424 EDO EDO . R 7 HOH A 1 601 3 HOH HOH . R 7 HOH A 2 602 6 HOH HOH . R 7 HOH A 3 603 8 HOH HOH . R 7 HOH A 4 604 9 HOH HOH . R 7 HOH A 5 605 10 HOH HOH . R 7 HOH A 6 606 14 HOH HOH . R 7 HOH A 7 607 17 HOH HOH . R 7 HOH A 8 608 27 HOH HOH . R 7 HOH A 9 609 28 HOH HOH . R 7 HOH A 10 610 47 HOH HOH . R 7 HOH A 11 611 48 HOH HOH . R 7 HOH A 12 612 51 HOH HOH . R 7 HOH A 13 613 52 HOH HOH . R 7 HOH A 14 614 53 HOH HOH . R 7 HOH A 15 615 56 HOH HOH . R 7 HOH A 16 616 58 HOH HOH . R 7 HOH A 17 617 70 HOH HOH . R 7 HOH A 18 618 71 HOH HOH . R 7 HOH A 19 619 74 HOH HOH . R 7 HOH A 20 620 80 HOH HOH . R 7 HOH A 21 621 81 HOH HOH . R 7 HOH A 22 622 82 HOH HOH . R 7 HOH A 23 623 84 HOH HOH . R 7 HOH A 24 624 85 HOH HOH . R 7 HOH A 25 625 94 HOH HOH . R 7 HOH A 26 626 95 HOH HOH . R 7 HOH A 27 627 97 HOH HOH . R 7 HOH A 28 628 98 HOH HOH . R 7 HOH A 29 629 99 HOH HOH . R 7 HOH A 30 630 100 HOH HOH . R 7 HOH A 31 631 101 HOH HOH . R 7 HOH A 32 632 103 HOH HOH . R 7 HOH A 33 633 104 HOH HOH . R 7 HOH A 34 634 132 HOH HOH . S 7 HOH B 1 601 2 HOH HOH . S 7 HOH B 2 602 15 HOH HOH . S 7 HOH B 3 603 16 HOH HOH . S 7 HOH B 4 604 18 HOH HOH . S 7 HOH B 5 605 22 HOH HOH . S 7 HOH B 6 606 32 HOH HOH . S 7 HOH B 7 607 40 HOH HOH . S 7 HOH B 8 608 42 HOH HOH . S 7 HOH B 9 609 43 HOH HOH . S 7 HOH B 10 610 45 HOH HOH . S 7 HOH B 11 611 46 HOH HOH . S 7 HOH B 12 612 54 HOH HOH . S 7 HOH B 13 613 55 HOH HOH . S 7 HOH B 14 614 67 HOH HOH . S 7 HOH B 15 615 72 HOH HOH . S 7 HOH B 16 616 75 HOH HOH . S 7 HOH B 17 617 76 HOH HOH . S 7 HOH B 18 618 77 HOH HOH . S 7 HOH B 19 619 78 HOH HOH . S 7 HOH B 20 620 79 HOH HOH . S 7 HOH B 21 621 83 HOH HOH . S 7 HOH B 22 622 92 HOH HOH . S 7 HOH B 23 623 93 HOH HOH . S 7 HOH B 24 624 105 HOH HOH . S 7 HOH B 25 625 106 HOH HOH . S 7 HOH B 26 626 107 HOH HOH . S 7 HOH B 27 627 108 HOH HOH . S 7 HOH B 28 628 128 HOH HOH . S 7 HOH B 29 629 130 HOH HOH . S 7 HOH B 30 630 131 HOH HOH . S 7 HOH B 31 631 133 HOH HOH . T 7 HOH C 1 601 1 HOH HOH . T 7 HOH C 2 602 11 HOH HOH . T 7 HOH C 3 603 13 HOH HOH . T 7 HOH C 4 604 20 HOH HOH . T 7 HOH C 5 605 23 HOH HOH . T 7 HOH C 6 606 26 HOH HOH . T 7 HOH C 7 607 31 HOH HOH . T 7 HOH C 8 608 39 HOH HOH . T 7 HOH C 9 609 44 HOH HOH . T 7 HOH C 10 610 49 HOH HOH . T 7 HOH C 11 611 50 HOH HOH . T 7 HOH C 12 612 68 HOH HOH . T 7 HOH C 13 613 69 HOH HOH . T 7 HOH C 14 614 89 HOH HOH . T 7 HOH C 15 615 90 HOH HOH . T 7 HOH C 16 616 91 HOH HOH . T 7 HOH C 17 617 96 HOH HOH . T 7 HOH C 18 618 109 HOH HOH . T 7 HOH C 19 619 110 HOH HOH . T 7 HOH C 20 620 111 HOH HOH . T 7 HOH C 21 621 112 HOH HOH . T 7 HOH C 22 622 113 HOH HOH . T 7 HOH C 23 623 114 HOH HOH . T 7 HOH C 24 624 115 HOH HOH . T 7 HOH C 25 625 117 HOH HOH . T 7 HOH C 26 626 127 HOH HOH . U 7 HOH D 1 601 4 HOH HOH . U 7 HOH D 2 602 5 HOH HOH . U 7 HOH D 3 603 7 HOH HOH . U 7 HOH D 4 604 12 HOH HOH . U 7 HOH D 5 605 19 HOH HOH . U 7 HOH D 6 606 21 HOH HOH . U 7 HOH D 7 607 24 HOH HOH . U 7 HOH D 8 608 25 HOH HOH . U 7 HOH D 9 609 29 HOH HOH . U 7 HOH D 10 610 30 HOH HOH . U 7 HOH D 11 611 33 HOH HOH . U 7 HOH D 12 612 34 HOH HOH . U 7 HOH D 13 613 35 HOH HOH . U 7 HOH D 14 614 36 HOH HOH . U 7 HOH D 15 615 37 HOH HOH . U 7 HOH D 16 616 38 HOH HOH . U 7 HOH D 17 617 41 HOH HOH . U 7 HOH D 18 618 57 HOH HOH . U 7 HOH D 19 619 59 HOH HOH . U 7 HOH D 20 620 60 HOH HOH . U 7 HOH D 21 621 61 HOH HOH . U 7 HOH D 22 622 62 HOH HOH . U 7 HOH D 23 623 63 HOH HOH . U 7 HOH D 24 624 64 HOH HOH . U 7 HOH D 25 625 65 HOH HOH . U 7 HOH D 26 626 66 HOH HOH . U 7 HOH D 27 627 73 HOH HOH . U 7 HOH D 28 628 86 HOH HOH . U 7 HOH D 29 629 87 HOH HOH . U 7 HOH D 30 630 88 HOH HOH . U 7 HOH D 31 631 102 HOH HOH . U 7 HOH D 32 632 116 HOH HOH . U 7 HOH D 33 633 118 HOH HOH . U 7 HOH D 34 634 119 HOH HOH . U 7 HOH D 35 635 120 HOH HOH . U 7 HOH D 36 636 121 HOH HOH . U 7 HOH D 37 637 122 HOH HOH . U 7 HOH D 38 638 123 HOH HOH . U 7 HOH D 39 639 124 HOH HOH . U 7 HOH D 40 640 125 HOH HOH . U 7 HOH D 41 641 126 HOH HOH . U 7 HOH D 42 642 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . E 2 27.942 -9.13 -1.388 1 34.6 ? P IMP 501 A 1 HETATM 2 O O1P IMP . . . E 2 27.599 -10.576 -1.681 1 35.21 ? O1P IMP 501 A 1 HETATM 3 O O2P IMP . . . E 2 29.346 -8.803 -0.943 1 33.54 ? O2P IMP 501 A 1 HETATM 4 O O3P IMP . . . E 2 27.055 -8.7 -0.244 1 36.11 ? O3P IMP 501 A 1 HETATM 5 O O5' IMP . . . E 2 27.557 -8.261 -2.679 1 37.04 ? O5' IMP 501 A 1 HETATM 6 C C5' IMP . . . E 2 27.766 -8.746 -4.004 1 35.51 ? C5' IMP 501 A 1 HETATM 7 C C4' IMP . . . E 2 26.972 -7.986 -5.046 1 36.19 ? C4' IMP 501 A 1 HETATM 8 O O4' IMP . . . E 2 27.175 -6.55 -4.952 1 36.15 ? O4' IMP 501 A 1 HETATM 9 C C3' IMP . . . E 2 27.327 -8.291 -6.49 1 37.06 ? C3' IMP 501 A 1 HETATM 10 O O3' IMP . . . E 2 26.829 -9.551 -6.93 1 36.51 ? O3' IMP 501 A 1 HETATM 11 C C2' IMP . . . E 2 26.766 -7.075 -7.247 1 36.43 ? C2' IMP 501 A 1 HETATM 12 O O2' IMP . . . E 2 25.384 -7.241 -7.5 1 36.47 ? O2' IMP 501 A 1 HETATM 13 C C1' IMP . . . E 2 26.927 -5.948 -6.218 1 37.24 ? C1' IMP 501 A 1 HETATM 14 N N9 IMP . . . E 2 28.04 -5.03 -6.556 1 41.59 ? N9 IMP 501 A 1 HETATM 15 C C8 IMP . . . E 2 29.242 -5.386 -7.133 1 42.82 ? C8 IMP 501 A 1 HETATM 16 N N7 IMP . . . E 2 30.028 -4.282 -7.277 1 43.23 ? N7 IMP 501 A 1 HETATM 17 C C5 IMP . . . E 2 29.363 -3.208 -6.802 1 44.32 ? C5 IMP 501 A 1 HETATM 18 C C6 IMP . . . E 2 29.72 -1.854 -6.704 1 46.32 ? C6 IMP 501 A 1 HETATM 19 O O6 IMP . . . E 2 30.892 -1.493 -6.892 1 47.5 ? O6 IMP 501 A 1 HETATM 20 N N1 IMP . . . E 2 28.82 -0.948 -6.162 1 45.13 ? N1 IMP 501 A 1 HETATM 21 C C2 IMP . . . E 2 27.604 -1.41 -5.721 1 44.25 ? C2 IMP 501 A 1 HETATM 22 N N3 IMP . . . E 2 27.252 -2.75 -5.814 1 44.65 ? N3 IMP 501 A 1 HETATM 23 C C4 IMP . . . E 2 28.116 -3.658 -6.345 1 43.7 ? C4 IMP 501 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #