data_4QJ5 # _model_server_result.job_id IJiSa3aK6b-ZQu1aIV3i0g _model_server_result.datetime_utc '2024-11-01 07:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":902}' # _entry.id 4QJ5 # _exptl.entry_id 4QJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.8 _cell.angle_gamma 90 _cell.entry_id 4QJ5 _cell.length_a 205.918 _cell.length_b 89.869 _cell.length_c 93.261 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 73 A SER 53 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OG1 THR 206 A THR 186 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 C O2B GDP . A GDP 400 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 C O2A GDP . A GDP 400 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc5 E MG MG . A MG 402 1_555 H O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 B OD1 ASN 334 B ASN 333 1_555 F CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 B OE2 GLU 363 B GLU 362 1_555 F CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc8 B OD2 ASP 365 B ASP 364 1_555 F CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 B OD1 ASP 365 B ASP 364 1_555 F CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 B OE1 GLU 414 B GLU 413 1_555 F CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 F CA CA . B CA 901 1_555 G O11 I3P . B I3P 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc12 F CA CA . B CA 901 1_555 G O2 I3P . B I3P 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 201 n n C1 C6 I3P sing 202 n n C1 O1 I3P sing 203 n n C1 H1 I3P sing 204 n n C2 C3 I3P sing 205 n n C2 O2 I3P sing 206 n n C2 H2 I3P sing 207 n n C3 C4 I3P sing 208 n n C3 O3 I3P sing 209 n n C3 H3 I3P sing 210 n n C4 C5 I3P sing 211 n n C4 O4 I3P sing 212 n n C4 H4 I3P sing 213 n n C5 C6 I3P sing 214 n n C5 O5 I3P sing 215 n n C5 H5 I3P sing 216 n n C6 O6 I3P sing 217 n n C6 H6 I3P sing 218 n n O1 P1 I3P sing 219 n n O2 HO2 I3P sing 220 n n O3 HO3 I3P sing 221 n n O4 P4 I3P sing 222 n n O5 P5 I3P sing 223 n n O6 HO6 I3P sing 224 n n P1 O11 I3P doub 225 n n P1 O12 I3P sing 226 n n P1 O13 I3P sing 227 n n O12 HO12 I3P sing 228 n n O13 HO13 I3P sing 229 n n P4 O41 I3P doub 230 n n P4 O42 I3P sing 231 n n P4 O43 I3P sing 232 n n O42 HO42 I3P sing 233 n n O43 HO43 I3P sing 234 n n P5 O51 I3P doub 235 n n P5 O52 I3P sing 236 n n P5 O53 I3P sing 237 n n O52 HO52 I3P sing 238 n n O53 HO53 I3P sing 239 n n # _atom_sites.entry_id 4QJ5 _atom_sites.fract_transf_matrix[1][1] 0.004856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 400 400 GDP GDP . D 4 ALF A 1 401 401 ALF ALF . E 5 MG A 1 402 402 MG MG . F 6 CA B 1 901 900 CA CA . G 7 I3P B 1 902 1 I3P I3P . H 8 HOH A 1 501 1 HOH HOH . H 8 HOH A 2 502 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . G 7 34.32 37.606 15.372 1 130.45 ? C1 I3P 902 B 1 HETATM 2 C C2 I3P . . . G 7 33.325 36.504 15.76 1 130.96 ? C2 I3P 902 B 1 HETATM 3 C C3 I3P . . . G 7 32.73 36.753 17.129 1 132.42 ? C3 I3P 902 B 1 HETATM 4 C C4 I3P . . . G 7 32.05 38.109 17.102 1 133.99 ? C4 I3P 902 B 1 HETATM 5 C C5 I3P . . . G 7 33.15 39.152 17.186 1 132.53 ? C5 I3P 902 B 1 HETATM 6 C C6 I3P . . . G 7 34.096 39.014 15.981 1 131.78 ? C6 I3P 902 B 1 HETATM 7 O O1 I3P . . . G 7 34.313 37.728 13.943 1 129.1 ? O1 I3P 902 B 1 HETATM 8 O O2 I3P . . . G 7 32.251 36.402 14.813 1 130.51 ? O2 I3P 902 B 1 HETATM 9 O O3 I3P . . . G 7 31.826 35.698 17.487 1 132.03 ? O3 I3P 902 B 1 HETATM 10 O O4 I3P . . . G 7 31.112 38.206 18.167 1 139.05 ? O4 I3P 902 B 1 HETATM 11 O O5 I3P . . . G 7 32.577 40.467 17.22 1 131.12 ? O5 I3P 902 B 1 HETATM 12 O O6 I3P . . . G 7 35.375 39.511 16.392 1 132.5 ? O6 I3P 902 B 1 HETATM 13 P P1 I3P . . . G 7 34.61 36.499 12.933 1 126.27 ? P1 I3P 902 B 1 HETATM 14 O O11 I3P . . . G 7 33.268 35.849 12.697 1 124.14 ? O11 I3P 902 B 1 HETATM 15 O O12 I3P . . . G 7 35.583 35.624 13.687 1 125.63 ? O12 I3P 902 B 1 HETATM 16 O O13 I3P . . . G 7 35.176 37.169 11.701 1 125.9 ? O13 I3P 902 B 1 HETATM 17 P P4 I3P . . . G 7 29.583 37.737 17.955 1 143.01 ? P4 I3P 902 B 1 HETATM 18 O O41 I3P . . . G 7 28.856 39.038 17.689 1 143.81 ? O41 I3P 902 B 1 HETATM 19 O O42 I3P . . . G 7 29.261 37.055 19.269 1 140.88 ? O42 I3P 902 B 1 HETATM 20 O O43 I3P . . . G 7 29.592 36.802 16.763 1 141.13 ? O43 I3P 902 B 1 HETATM 21 P P5 I3P . . . G 7 32.101 41.249 18.559 1 128.86 ? P5 I3P 902 B 1 HETATM 22 O O51 I3P . . . G 7 32.589 40.429 19.728 1 127.34 ? O51 I3P 902 B 1 HETATM 23 O O52 I3P . . . G 7 32.77 42.596 18.445 1 130.22 ? O52 I3P 902 B 1 HETATM 24 O O53 I3P . . . G 7 30.597 41.314 18.435 1 127.84 ? O53 I3P 902 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #