data_4QJ9
#
_model_server_result.job_id            IuAcJuZQGAqq0DT3R79qDw 
_model_server_result.datetime_utc      '2024-11-24 12:59:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4qj9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":103}' 
#
_entry.id    4QJ9 
#
_exptl.entry_id    4QJ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4QJ9 
_cell.length_a            50.861 
_cell.length_b            57.883 
_cell.length_c            61.756 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4QJ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4QJ9 
_atom_sites.fract_transf_matrix[1][1]    0.019661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 PO4 A 1 101 1 PO4 PO4 . 
E 3 PO4 A 1 102 2 PO4 PO4 . 
F 3 PO4 A 1 103 3 PO4 PO4 . 
G 4 GOL A 1 104 1 GOL GOL . 
H 4 GOL A 1 105 2 GOL GOL . 
I 4 GOL A 1 106 3 GOL GOL . 
J 3 PO4 B 1 101 4 PO4 PO4 . 
K 4 GOL B 1 102 4 GOL GOL . 
L 4 GOL B 1 103 5 GOL GOL . 
M 5 HOH A 1 201 1 HOH HOH . 
M 5 HOH A 2 202 3 HOH HOH . 
M 5 HOH A 3 203 4 HOH HOH . 
M 5 HOH A 4 204 6 HOH HOH . 
M 5 HOH A 5 205 8 HOH HOH . 
M 5 HOH A 6 206 9 HOH HOH . 
M 5 HOH A 7 207 11 HOH HOH . 
M 5 HOH A 8 208 12 HOH HOH . 
M 5 HOH A 9 209 18 HOH HOH . 
M 5 HOH A 10 210 19 HOH HOH . 
M 5 HOH A 11 211 25 HOH HOH . 
M 5 HOH A 12 212 26 HOH HOH . 
M 5 HOH A 13 213 29 HOH HOH . 
M 5 HOH A 14 214 31 HOH HOH . 
M 5 HOH A 15 215 33 HOH HOH . 
M 5 HOH A 16 216 39 HOH HOH . 
M 5 HOH A 17 217 40 HOH HOH . 
M 5 HOH A 18 218 42 HOH HOH . 
M 5 HOH A 19 219 44 HOH HOH . 
M 5 HOH A 20 220 45 HOH HOH . 
M 5 HOH A 21 221 47 HOH HOH . 
M 5 HOH A 22 222 48 HOH HOH . 
M 5 HOH A 23 223 49 HOH HOH . 
M 5 HOH A 24 224 54 HOH HOH . 
M 5 HOH A 25 225 55 HOH HOH . 
M 5 HOH A 26 226 58 HOH HOH . 
M 5 HOH A 27 227 60 HOH HOH . 
M 5 HOH A 28 228 61 HOH HOH . 
M 5 HOH A 29 229 62 HOH HOH . 
M 5 HOH A 30 230 63 HOH HOH . 
M 5 HOH A 31 231 68 HOH HOH . 
M 5 HOH A 32 232 69 HOH HOH . 
M 5 HOH A 33 233 73 HOH HOH . 
M 5 HOH A 34 234 75 HOH HOH . 
M 5 HOH A 35 235 79 HOH HOH . 
M 5 HOH A 36 236 80 HOH HOH . 
M 5 HOH A 37 237 82 HOH HOH . 
M 5 HOH A 38 238 85 HOH HOH . 
M 5 HOH A 39 239 88 HOH HOH . 
M 5 HOH A 40 240 89 HOH HOH . 
M 5 HOH A 41 241 90 HOH HOH . 
M 5 HOH A 42 242 91 HOH HOH . 
M 5 HOH A 43 243 92 HOH HOH . 
M 5 HOH A 44 244 93 HOH HOH . 
M 5 HOH A 45 245 94 HOH HOH . 
M 5 HOH A 46 246 95 HOH HOH . 
M 5 HOH A 47 247 96 HOH HOH . 
M 5 HOH A 48 248 97 HOH HOH . 
M 5 HOH A 49 249 100 HOH HOH . 
M 5 HOH A 50 250 101 HOH HOH . 
M 5 HOH A 51 251 104 HOH HOH . 
M 5 HOH A 52 252 106 HOH HOH . 
M 5 HOH A 53 253 107 HOH HOH . 
M 5 HOH A 54 254 111 HOH HOH . 
M 5 HOH A 55 255 112 HOH HOH . 
M 5 HOH A 56 256 113 HOH HOH . 
M 5 HOH A 57 257 114 HOH HOH . 
M 5 HOH A 58 258 117 HOH HOH . 
M 5 HOH A 59 259 118 HOH HOH . 
M 5 HOH A 60 260 119 HOH HOH . 
M 5 HOH A 61 261 121 HOH HOH . 
M 5 HOH A 62 262 123 HOH HOH . 
M 5 HOH A 63 263 124 HOH HOH . 
M 5 HOH A 64 264 127 HOH HOH . 
M 5 HOH A 65 265 128 HOH HOH . 
M 5 HOH A 66 266 129 HOH HOH . 
M 5 HOH A 67 267 130 HOH HOH . 
M 5 HOH A 68 268 133 HOH HOH . 
M 5 HOH A 69 269 135 HOH HOH . 
M 5 HOH A 70 270 136 HOH HOH . 
M 5 HOH A 71 271 139 HOH HOH . 
M 5 HOH A 72 272 140 HOH HOH . 
M 5 HOH A 73 273 142 HOH HOH . 
M 5 HOH A 74 274 143 HOH HOH . 
M 5 HOH A 75 275 144 HOH HOH . 
M 5 HOH A 76 276 145 HOH HOH . 
M 5 HOH A 77 277 146 HOH HOH . 
M 5 HOH A 78 278 148 HOH HOH . 
M 5 HOH A 79 279 151 HOH HOH . 
N 5 HOH B 1 201 2 HOH HOH . 
N 5 HOH B 2 202 5 HOH HOH . 
N 5 HOH B 3 203 7 HOH HOH . 
N 5 HOH B 4 204 10 HOH HOH . 
N 5 HOH B 5 205 13 HOH HOH . 
N 5 HOH B 6 206 14 HOH HOH . 
N 5 HOH B 7 207 15 HOH HOH . 
N 5 HOH B 8 208 16 HOH HOH . 
N 5 HOH B 9 209 17 HOH HOH . 
N 5 HOH B 10 210 20 HOH HOH . 
N 5 HOH B 11 211 22 HOH HOH . 
N 5 HOH B 12 212 23 HOH HOH . 
N 5 HOH B 13 213 24 HOH HOH . 
N 5 HOH B 14 214 27 HOH HOH . 
N 5 HOH B 15 215 28 HOH HOH . 
N 5 HOH B 16 216 30 HOH HOH . 
N 5 HOH B 17 217 32 HOH HOH . 
N 5 HOH B 18 218 34 HOH HOH . 
N 5 HOH B 19 219 35 HOH HOH . 
N 5 HOH B 20 220 36 HOH HOH . 
N 5 HOH B 21 221 37 HOH HOH . 
N 5 HOH B 22 222 38 HOH HOH . 
N 5 HOH B 23 223 41 HOH HOH . 
N 5 HOH B 24 224 43 HOH HOH . 
N 5 HOH B 25 225 46 HOH HOH . 
N 5 HOH B 26 226 50 HOH HOH . 
N 5 HOH B 27 227 51 HOH HOH . 
N 5 HOH B 28 228 52 HOH HOH . 
N 5 HOH B 29 229 53 HOH HOH . 
N 5 HOH B 30 230 56 HOH HOH . 
N 5 HOH B 31 231 57 HOH HOH . 
N 5 HOH B 32 232 59 HOH HOH . 
N 5 HOH B 33 233 64 HOH HOH . 
N 5 HOH B 34 234 65 HOH HOH . 
N 5 HOH B 35 235 66 HOH HOH . 
N 5 HOH B 36 236 67 HOH HOH . 
N 5 HOH B 37 237 70 HOH HOH . 
N 5 HOH B 38 238 71 HOH HOH . 
N 5 HOH B 39 239 72 HOH HOH . 
N 5 HOH B 40 240 74 HOH HOH . 
N 5 HOH B 41 241 76 HOH HOH . 
N 5 HOH B 42 242 77 HOH HOH . 
N 5 HOH B 43 243 78 HOH HOH . 
N 5 HOH B 44 244 81 HOH HOH . 
N 5 HOH B 45 245 83 HOH HOH . 
N 5 HOH B 46 246 84 HOH HOH . 
N 5 HOH B 47 247 86 HOH HOH . 
N 5 HOH B 48 248 87 HOH HOH . 
N 5 HOH B 49 249 98 HOH HOH . 
N 5 HOH B 50 250 99 HOH HOH . 
N 5 HOH B 51 251 102 HOH HOH . 
N 5 HOH B 52 252 103 HOH HOH . 
N 5 HOH B 53 253 105 HOH HOH . 
N 5 HOH B 54 254 108 HOH HOH . 
N 5 HOH B 55 255 109 HOH HOH . 
N 5 HOH B 56 256 110 HOH HOH . 
N 5 HOH B 57 257 115 HOH HOH . 
N 5 HOH B 58 258 116 HOH HOH . 
N 5 HOH B 59 259 120 HOH HOH . 
N 5 HOH B 60 260 122 HOH HOH . 
N 5 HOH B 61 261 125 HOH HOH . 
N 5 HOH B 62 262 126 HOH HOH . 
N 5 HOH B 63 263 131 HOH HOH . 
N 5 HOH B 64 264 132 HOH HOH . 
N 5 HOH B 65 265 134 HOH HOH . 
N 5 HOH B 66 266 137 HOH HOH . 
N 5 HOH B 67 267 138 HOH HOH . 
N 5 HOH B 68 268 141 HOH HOH . 
N 5 HOH B 69 269 147 HOH HOH . 
N 5 HOH B 70 270 149 HOH HOH . 
N 5 HOH B 71 271 150 HOH HOH . 
O 5 HOH G 1 101 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 4 -7.108 13.872 -11.063 1 48.57 ? C1 GOL 103 B 1 
HETATM 2 O O1 GOL . . . L 4 -8.268 13.643 -11.891 1 48.37 ? O1 GOL 103 B 1 
HETATM 3 C C2 GOL . . . L 4 -5.916 13.183 -11.705 1 47.8 ? C2 GOL 103 B 1 
HETATM 4 O O2 GOL . . . L 4 -6.094 13.284 -13.098 1 45.18 ? O2 GOL 103 B 1 
HETATM 5 C C3 GOL . . . L 4 -4.588 13.824 -11.353 1 47.11 ? C3 GOL 103 B 1 
HETATM 6 O O3 GOL . . . L 4 -3.547 13.14 -12.062 1 48.77 ? O3 GOL 103 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#