data_4QJC # _model_server_result.job_id v7YXIOBbdwJ1z11P4VrKQw _model_server_result.datetime_utc '2024-11-08 16:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4QJC # _exptl.entry_id 4QJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4QJC _cell.length_a 84.486 _cell.length_b 84.486 _cell.length_c 77.872 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 273 n n PA O2A NDP sing 274 n n PA O5B NDP sing 275 n n PA O3 NDP sing 276 n n O2A HOA2 NDP sing 277 n n O5B C5B NDP sing 278 n n C5B C4B NDP sing 279 n n C5B H51A NDP sing 280 n n C5B H52A NDP sing 281 n n C4B O4B NDP sing 282 n n C4B C3B NDP sing 283 n n C4B H4B NDP sing 284 n n O4B C1B NDP sing 285 n n C3B O3B NDP sing 286 n n C3B C2B NDP sing 287 n n C3B H3B NDP sing 288 n n O3B HO3A NDP sing 289 n n C2B O2B NDP sing 290 n n C2B C1B NDP sing 291 n n C2B H2B NDP sing 292 n n O2B P2B NDP sing 293 n n C1B N9A NDP sing 294 n n C1B H1B NDP sing 295 n n N9A C8A NDP sing 296 n y N9A C4A NDP sing 297 n y C8A N7A NDP doub 298 n y C8A H8A NDP sing 299 n n N7A C5A NDP sing 300 n y C5A C6A NDP sing 301 n y C5A C4A NDP doub 302 n y C6A N6A NDP sing 303 n n C6A N1A NDP doub 304 n y N6A H61A NDP sing 305 n n N6A H62A NDP sing 306 n n N1A C2A NDP sing 307 n y C2A N3A NDP doub 308 n y C2A H2A NDP sing 309 n n N3A C4A NDP sing 310 n y O3 PN NDP sing 311 n n PN O1N NDP doub 312 n n PN O2N NDP sing 313 n n PN O5D NDP sing 314 n n O2N H21N NDP sing 315 n n O5D C5D NDP sing 316 n n C5D C4D NDP sing 317 n n C5D H51N NDP sing 318 n n C5D H52N NDP sing 319 n n C4D O4D NDP sing 320 n n C4D C3D NDP sing 321 n n C4D H4D NDP sing 322 n n O4D C1D NDP sing 323 n n C3D O3D NDP sing 324 n n C3D C2D NDP sing 325 n n C3D H3D NDP sing 326 n n O3D HO3N NDP sing 327 n n C2D O2D NDP sing 328 n n C2D C1D NDP sing 329 n n C2D H2D NDP sing 330 n n O2D HO2N NDP sing 331 n n C1D N1N NDP sing 332 n n C1D H1D NDP sing 333 n n N1N C2N NDP sing 334 n n N1N C6N NDP sing 335 n n C2N C3N NDP doub 336 n n C2N H2N NDP sing 337 n n C3N C7N NDP sing 338 n n C3N C4N NDP sing 339 n n C7N O7N NDP doub 340 n n C7N N7N NDP sing 341 n n N7N H71N NDP sing 342 n n N7N H72N NDP sing 343 n n C4N C5N NDP sing 344 n n C4N H41N NDP sing 345 n n C4N H42N NDP sing 346 n n C5N C6N NDP doub 347 n n C5N H5N NDP sing 348 n n C6N H6N NDP sing 349 n n P2B O1X NDP doub 350 n n P2B O2X NDP sing 351 n n P2B O3X NDP sing 352 n n O2X HOP2 NDP sing 353 n n O3X HOP3 NDP sing 354 n n # _atom_sites.entry_id 4QJC _atom_sites.fract_transf_matrix[1][1] 0.011836 _atom_sites.fract_transf_matrix[1][2] 0.006834 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 1 NDP NDP . C 3 IXE A 1 202 1 IXE VIV . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 10 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 12 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 15 HOH HOH . D 4 HOH A 16 316 16 HOH HOH . D 4 HOH A 17 317 17 HOH HOH . D 4 HOH A 18 318 18 HOH HOH . D 4 HOH A 19 319 19 HOH HOH . D 4 HOH A 20 320 20 HOH HOH . D 4 HOH A 21 321 21 HOH HOH . D 4 HOH A 22 322 22 HOH HOH . D 4 HOH A 23 323 24 HOH HOH . D 4 HOH A 24 324 25 HOH HOH . D 4 HOH A 25 325 26 HOH HOH . D 4 HOH A 26 326 27 HOH HOH . D 4 HOH A 27 327 28 HOH HOH . D 4 HOH A 28 328 29 HOH HOH . D 4 HOH A 29 329 30 HOH HOH . D 4 HOH A 30 330 31 HOH HOH . D 4 HOH A 31 331 32 HOH HOH . D 4 HOH A 32 332 33 HOH HOH . D 4 HOH A 33 333 35 HOH HOH . D 4 HOH A 34 334 36 HOH HOH . D 4 HOH A 35 335 37 HOH HOH . D 4 HOH A 36 336 38 HOH HOH . D 4 HOH A 37 337 39 HOH HOH . D 4 HOH A 38 338 40 HOH HOH . D 4 HOH A 39 339 41 HOH HOH . D 4 HOH A 40 340 42 HOH HOH . D 4 HOH A 41 341 43 HOH HOH . D 4 HOH A 42 342 44 HOH HOH . D 4 HOH A 43 343 45 HOH HOH . D 4 HOH A 44 344 46 HOH HOH . D 4 HOH A 45 345 47 HOH HOH . D 4 HOH A 46 346 48 HOH HOH . D 4 HOH A 47 347 49 HOH HOH . D 4 HOH A 48 348 50 HOH HOH . D 4 HOH A 49 349 51 HOH HOH . D 4 HOH A 50 350 52 HOH HOH . D 4 HOH A 51 351 53 HOH HOH . D 4 HOH A 52 352 54 HOH HOH . D 4 HOH A 53 353 55 HOH HOH . D 4 HOH A 54 354 56 HOH HOH . D 4 HOH A 55 355 57 HOH HOH . D 4 HOH A 56 356 58 HOH HOH . D 4 HOH A 57 357 59 HOH HOH . D 4 HOH A 58 358 60 HOH HOH . D 4 HOH A 59 359 61 HOH HOH . D 4 HOH A 60 360 62 HOH HOH . D 4 HOH A 61 361 63 HOH HOH . D 4 HOH A 62 362 64 HOH HOH . D 4 HOH A 63 363 65 HOH HOH . D 4 HOH A 64 364 66 HOH HOH . D 4 HOH A 65 365 67 HOH HOH . D 4 HOH A 66 366 68 HOH HOH . D 4 HOH A 67 367 69 HOH HOH . D 4 HOH A 68 368 70 HOH HOH . D 4 HOH A 69 369 71 HOH HOH . D 4 HOH A 70 370 72 HOH HOH . D 4 HOH A 71 371 73 HOH HOH . D 4 HOH A 72 372 74 HOH HOH . D 4 HOH A 73 373 75 HOH HOH . D 4 HOH A 74 374 76 HOH HOH . D 4 HOH A 75 375 77 HOH HOH . D 4 HOH A 76 376 78 HOH HOH . D 4 HOH A 77 377 79 HOH HOH . D 4 HOH A 78 378 80 HOH HOH . D 4 HOH A 79 379 81 HOH HOH . D 4 HOH A 80 380 82 HOH HOH . D 4 HOH A 81 381 83 HOH HOH . D 4 HOH A 82 382 84 HOH HOH . D 4 HOH A 83 383 85 HOH HOH . D 4 HOH A 84 384 86 HOH HOH . D 4 HOH A 85 385 87 HOH HOH . D 4 HOH A 86 386 88 HOH HOH . D 4 HOH A 87 387 89 HOH HOH . D 4 HOH A 88 388 90 HOH HOH . D 4 HOH A 89 389 91 HOH HOH . D 4 HOH A 90 390 92 HOH HOH . D 4 HOH A 91 391 93 HOH HOH . D 4 HOH A 92 392 94 HOH HOH . D 4 HOH A 93 393 95 HOH HOH . D 4 HOH A 94 394 96 HOH HOH . D 4 HOH A 95 395 97 HOH HOH . D 4 HOH A 96 396 98 HOH HOH . D 4 HOH A 97 397 99 HOH HOH . D 4 HOH A 98 398 100 HOH HOH . D 4 HOH A 99 399 101 HOH HOH . D 4 HOH A 100 400 102 HOH HOH . D 4 HOH A 101 401 103 HOH HOH . D 4 HOH A 102 402 104 HOH HOH . D 4 HOH A 103 403 105 HOH HOH . D 4 HOH A 104 404 106 HOH HOH . D 4 HOH A 105 405 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -6.211 -22.381 -35.713 1 18.79 ? PA NDP 201 A 1 HETATM 2 O O1A NDP . . . B 2 -6.472 -23.807 -35.422 1 22.26 ? O1A NDP 201 A 1 HETATM 3 O O2A NDP . . . B 2 -5.132 -21.673 -34.991 1 17.22 ? O2A NDP 201 A 1 HETATM 4 O O5B NDP . . . B 2 -5.937 -22.235 -37.293 1 17.93 ? O5B NDP 201 A 1 HETATM 5 C C5B NDP . . . B 2 -5.873 -23.401 -38.118 1 23.42 ? C5B NDP 201 A 1 HETATM 6 C C4B NDP . . . B 2 -5.515 -22.993 -39.55 1 24.7 ? C4B NDP 201 A 1 HETATM 7 O O4B NDP . . . B 2 -4.073 -23.039 -39.726 1 25.68 ? O4B NDP 201 A 1 HETATM 8 C C3B NDP . . . B 2 -6.114 -23.997 -40.53 1 27.65 ? C3B NDP 201 A 1 HETATM 9 O O3B NDP . . . B 2 -7.185 -23.376 -41.256 1 29.61 ? O3B NDP 201 A 1 HETATM 10 C C2B NDP . . . B 2 -4.977 -24.3 -41.472 1 26.11 ? C2B NDP 201 A 1 HETATM 11 O O2B NDP . . . B 2 -4.92 -23.294 -42.494 1 24.49 ? O2B NDP 201 A 1 HETATM 12 C C1B NDP . . . B 2 -3.772 -24.171 -40.569 1 24.21 ? C1B NDP 201 A 1 HETATM 13 N N9A NDP . . . B 2 -3.59 -25.391 -39.747 1 28.26 ? N9A NDP 201 A 1 HETATM 14 C C8A NDP . . . B 2 -4.165 -25.643 -38.575 1 23.58 ? C8A NDP 201 A 1 HETATM 15 N N7A NDP . . . B 2 -3.746 -26.836 -38.163 1 28.58 ? N7A NDP 201 A 1 HETATM 16 C C5A NDP . . . B 2 -2.912 -27.322 -39.078 1 25.74 ? C5A NDP 201 A 1 HETATM 17 C C6A NDP . . . B 2 -2.235 -28.467 -39.132 1 32.31 ? C6A NDP 201 A 1 HETATM 18 N N6A NDP . . . B 2 -2.397 -29.296 -38.105 1 33.5 ? N6A NDP 201 A 1 HETATM 19 N N1A NDP . . . B 2 -1.434 -28.769 -40.162 1 29.97 ? N1A NDP 201 A 1 HETATM 20 C C2A NDP . . . B 2 -1.311 -27.852 -41.207 1 29.9 ? C2A NDP 201 A 1 HETATM 21 N N3A NDP . . . B 2 -2.033 -26.659 -41.125 1 25.72 ? N3A NDP 201 A 1 HETATM 22 C C4A NDP . . . B 2 -2.815 -26.426 -40.061 1 28.38 ? C4A NDP 201 A 1 HETATM 23 O O3 NDP . . . B 2 -7.58 -21.557 -35.54 1 19.93 ? O3 NDP 201 A 1 HETATM 24 P PN NDP . . . B 2 -8.818 -22.21 -34.744 1 28.58 ? PN NDP 201 A 1 HETATM 25 O O1N NDP . . . B 2 -8.275 -23.147 -33.737 1 27.66 ? O1N NDP 201 A 1 HETATM 26 O O2N NDP . . . B 2 -9.8 -22.695 -35.738 1 36.93 ? O2N NDP 201 A 1 HETATM 27 O O5D NDP . . . B 2 -9.432 -20.933 -33.987 1 29.32 ? O5D NDP 201 A 1 HETATM 28 C C5D NDP . . . B 2 -8.639 -19.755 -33.814 1 31.85 ? C5D NDP 201 A 1 HETATM 29 C C4D NDP . . . B 2 -8.936 -19.136 -32.446 1 30.11 ? C4D NDP 201 A 1 HETATM 30 O O4D NDP . . . B 2 -8.167 -19.81 -31.439 1 26.1 ? O4D NDP 201 A 1 HETATM 31 C C3D NDP . . . B 2 -8.416 -17.708 -32.412 1 29.77 ? C3D NDP 201 A 1 HETATM 32 O O3D NDP . . . B 2 -9.505 -16.797 -32.625 1 26.81 ? O3D NDP 201 A 1 HETATM 33 C C2D NDP . . . B 2 -7.884 -17.541 -30.998 1 29.41 ? C2D NDP 201 A 1 HETATM 34 O O2D NDP . . . B 2 -8.633 -16.521 -30.321 1 35.21 ? O2D NDP 201 A 1 HETATM 35 C C1D NDP . . . B 2 -8.15 -18.886 -30.342 1 25.93 ? C1D NDP 201 A 1 HETATM 36 N N1N NDP . . . B 2 -7.059 -19.247 -29.409 1 22.08 ? N1N NDP 201 A 1 HETATM 37 C C2N NDP . . . B 2 -7.303 -19.305 -28.033 1 20.84 ? C2N NDP 201 A 1 HETATM 38 C C3N NDP . . . B 2 -6.275 -19.644 -27.161 1 21.76 ? C3N NDP 201 A 1 HETATM 39 C C7N NDP . . . B 2 -6.515 -19.703 -25.793 1 21.26 ? C7N NDP 201 A 1 HETATM 40 O O7N NDP . . . B 2 -6.055 -20.615 -25.108 1 18.42 ? O7N NDP 201 A 1 HETATM 41 N N7N NDP . . . B 2 -7.263 -18.715 -25.311 1 20.8 ? N7N NDP 201 A 1 HETATM 42 C C4N NDP . . . B 2 -5.006 -19.925 -27.656 1 18.42 ? C4N NDP 201 A 1 HETATM 43 C C5N NDP . . . B 2 -4.759 -19.868 -29.023 1 22.23 ? C5N NDP 201 A 1 HETATM 44 C C6N NDP . . . B 2 -5.78 -19.53 -29.903 1 21.55 ? C6N NDP 201 A 1 HETATM 45 P P2B NDP . . . B 2 -4.727 -23.723 -44.042 1 19.86 ? P2B NDP 201 A 1 HETATM 46 O O1X NDP . . . B 2 -6.209 -23.674 -44.689 1 22.01 ? O1X NDP 201 A 1 HETATM 47 O O2X NDP . . . B 2 -3.917 -22.503 -44.728 1 20.03 ? O2X NDP 201 A 1 HETATM 48 O O3X NDP . . . B 2 -4.061 -25.034 -44.206 1 22.26 ? O3X NDP 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #