data_4QJZ # _model_server_result.job_id S2iQW7GScblSBwE1pQ3SGA _model_server_result.datetime_utc '2024-11-08 17:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4qjz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4QJZ # _exptl.entry_id 4QJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~6~-methyl-N~6~-(naphthalen-1-yl)pyrido[2,3-d]pyrimidine-2,4,6-triamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.28 _cell.angle_gamma 90 _cell.entry_id 4QJZ _cell.length_a 36.771 _cell.length_b 42.813 _cell.length_c 61.114 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4QJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H16 N6' _chem_comp.formula_weight 316.36 _chem_comp.id 33M _chem_comp.mon_nstd_flag . _chem_comp.name N~6~-methyl-N~6~-(naphthalen-1-yl)pyrido[2,3-d]pyrimidine-2,4,6-triamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAH 33M doub 1 n y CAD CAE 33M sing 2 n y CAH CAT 33M sing 3 n y CAE CAJ 33M doub 4 n y CAT CAI 33M doub 5 n y CAT CAV 33M sing 6 n y CAI CAF 33M sing 7 n y CAJ CAV 33M sing 8 n y CAV CAS 33M doub 9 n y NAM CAK 33M doub 10 n y NAM C4 33M sing 11 n y CAF CAG 33M doub 12 n y CAK CAR 33M sing 13 n y N3 C4 33M doub 14 n y N3 C2 33M sing 15 n y CAS CAG 33M sing 16 n y CAS NAX 33M sing 17 n n C4 C5 33M sing 18 n y NAB C2 33M sing 19 n n CAR NAX 33M sing 20 n n CAR CAL 33M doub 21 n y C2 N1 33M doub 22 n y NAX CAA 33M sing 23 n n C5 CAL 33M sing 24 n y C5 C6 33M doub 25 n y N1 C6 33M sing 26 n y C6 NAC 33M sing 27 n n CAL H1 33M sing 28 n n NAC H2 33M sing 29 n n NAC H3 33M sing 30 n n NAB H4 33M sing 31 n n NAB H5 33M sing 32 n n CAK H6 33M sing 33 n n CAA H7 33M sing 34 n n CAA H8 33M sing 35 n n CAA H9 33M sing 36 n n CAJ H10 33M sing 37 n n CAE H11 33M sing 38 n n CAD H12 33M sing 39 n n CAH H13 33M sing 40 n n CAI H14 33M sing 41 n n CAF H15 33M sing 42 n n CAG H16 33M sing 43 n n # _atom_sites.entry_id 4QJZ _atom_sites.fract_transf_matrix[1][1] 0.027195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002512 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 33M D 1 301 1 33M VI1 . C 3 NDP D 1 302 1 NDP NDP . D 4 HOH D 1 401 1 HOH HOH . D 4 HOH D 2 402 2 HOH HOH . D 4 HOH D 3 403 3 HOH HOH . D 4 HOH D 4 404 4 HOH HOH . D 4 HOH D 5 405 5 HOH HOH . D 4 HOH D 6 406 6 HOH HOH . D 4 HOH D 7 407 7 HOH HOH . D 4 HOH D 8 408 8 HOH HOH . D 4 HOH D 9 409 9 HOH HOH . D 4 HOH D 10 410 10 HOH HOH . D 4 HOH D 11 411 11 HOH HOH . D 4 HOH D 12 412 12 HOH HOH . D 4 HOH D 13 413 13 HOH HOH . D 4 HOH D 14 414 14 HOH HOH . D 4 HOH D 15 415 15 HOH HOH . D 4 HOH D 16 416 16 HOH HOH . D 4 HOH D 17 417 17 HOH HOH . D 4 HOH D 18 418 18 HOH HOH . D 4 HOH D 19 419 19 HOH HOH . D 4 HOH D 20 420 20 HOH HOH . D 4 HOH D 21 421 21 HOH HOH . D 4 HOH D 22 422 22 HOH HOH . D 4 HOH D 23 423 23 HOH HOH . D 4 HOH D 24 424 24 HOH HOH . D 4 HOH D 25 425 25 HOH HOH . D 4 HOH D 26 426 26 HOH HOH . D 4 HOH D 27 427 27 HOH HOH . D 4 HOH D 28 428 28 HOH HOH . D 4 HOH D 29 429 29 HOH HOH . D 4 HOH D 30 430 30 HOH HOH . D 4 HOH D 31 431 31 HOH HOH . D 4 HOH D 32 432 32 HOH HOH . D 4 HOH D 33 433 33 HOH HOH . D 4 HOH D 34 434 34 HOH HOH . D 4 HOH D 35 435 35 HOH HOH . D 4 HOH D 36 436 36 HOH HOH . D 4 HOH D 37 437 37 HOH HOH . D 4 HOH D 38 438 38 HOH HOH . D 4 HOH D 39 439 39 HOH HOH . D 4 HOH D 40 440 40 HOH HOH . D 4 HOH D 41 441 41 HOH HOH . D 4 HOH D 42 442 42 HOH HOH . D 4 HOH D 43 443 43 HOH HOH . D 4 HOH D 44 444 44 HOH HOH . D 4 HOH D 45 445 45 HOH HOH . D 4 HOH D 46 446 46 HOH HOH . D 4 HOH D 47 447 47 HOH HOH . D 4 HOH D 48 448 48 HOH HOH . D 4 HOH D 49 449 49 HOH HOH . D 4 HOH D 50 450 50 HOH HOH . D 4 HOH D 51 451 51 HOH HOH . D 4 HOH D 52 452 52 HOH HOH . D 4 HOH D 53 453 53 HOH HOH . D 4 HOH D 54 454 54 HOH HOH . D 4 HOH D 55 455 55 HOH HOH . D 4 HOH D 56 456 56 HOH HOH . D 4 HOH D 57 457 57 HOH HOH . D 4 HOH D 58 458 58 HOH HOH . D 4 HOH D 59 459 59 HOH HOH . D 4 HOH D 60 460 60 HOH HOH . D 4 HOH D 61 461 61 HOH HOH . D 4 HOH D 62 462 62 HOH HOH . D 4 HOH D 63 463 63 HOH HOH . D 4 HOH D 64 464 64 HOH HOH . D 4 HOH D 65 465 65 HOH HOH . D 4 HOH D 66 466 66 HOH HOH . D 4 HOH D 67 467 67 HOH HOH . D 4 HOH D 68 468 68 HOH HOH . D 4 HOH D 69 469 69 HOH HOH . D 4 HOH D 70 470 70 HOH HOH . D 4 HOH D 71 471 71 HOH HOH . D 4 HOH D 72 472 72 HOH HOH . D 4 HOH D 73 473 73 HOH HOH . D 4 HOH D 74 474 74 HOH HOH . D 4 HOH D 75 475 75 HOH HOH . D 4 HOH D 76 476 76 HOH HOH . D 4 HOH D 77 477 78 HOH HOH . D 4 HOH D 78 478 79 HOH HOH . D 4 HOH D 79 479 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL 33M . . . B 2 12.27 0.611 13.235 1 16.59 ? CAL 33M 301 D 1 HETATM 2 C C5 33M . . . B 2 11.466 -0.507 12.971 1 16.57 ? C5 33M 301 D 1 HETATM 3 C C6 33M . . . B 2 10.312 -0.87 13.751 1 15.14 ? C6 33M 301 D 1 HETATM 4 N NAC 33M . . . B 2 9.962 -0.12 14.784 1 13.88 ? NAC 33M 301 D 1 HETATM 5 N N1 33M . . . B 2 9.551 -1.938 13.428 1 13.26 ? N1 33M 301 D 1 HETATM 6 C C2 33M . . . B 2 9.935 -2.742 12.395 1 14.09 ? C2 33M 301 D 1 HETATM 7 N NAB 33M . . . B 2 9.234 -3.832 11.993 1 14.19 ? NAB 33M 301 D 1 HETATM 8 N N3 33M . . . B 2 11.06 -2.447 11.685 1 14.76 ? N3 33M 301 D 1 HETATM 9 C C4 33M . . . B 2 11.815 -1.352 11.915 1 16.21 ? C4 33M 301 D 1 HETATM 10 N NAM 33M . . . B 2 12.884 -1.142 11.103 1 18.32 ? NAM 33M 301 D 1 HETATM 11 C CAK 33M . . . B 2 13.681 -0.038 11.372 1 15.65 ? CAK 33M 301 D 1 HETATM 12 C CAR 33M . . . B 2 13.398 0.862 12.391 1 17.85 ? CAR 33M 301 D 1 HETATM 13 N NAX 33M . . . B 2 14.21 1.951 12.562 1 18.9 ? NAX 33M 301 D 1 HETATM 14 C CAA 33M . . . B 2 13.918 2.891 13.715 1 20.3 ? CAA 33M 301 D 1 HETATM 15 C CAS 33M . . . B 2 15.276 2.197 11.7 1 19.94 ? CAS 33M 301 D 1 HETATM 16 C CAV 33M . . . B 2 15.024 2.716 10.408 1 20.07 ? CAV 33M 301 D 1 HETATM 17 C CAJ 33M . . . B 2 13.705 3.028 9.954 1 19.39 ? CAJ 33M 301 D 1 HETATM 18 C CAE 33M . . . B 2 13.445 3.514 8.676 1 21.2 ? CAE 33M 301 D 1 HETATM 19 C CAD 33M . . . B 2 14.543 3.734 7.807 1 23.39 ? CAD 33M 301 D 1 HETATM 20 C CAH 33M . . . B 2 15.863 3.469 8.233 1 21.36 ? CAH 33M 301 D 1 HETATM 21 C CAT 33M . . . B 2 16.119 2.964 9.529 1 21.85 ? CAT 33M 301 D 1 HETATM 22 C CAI 33M . . . B 2 17.444 2.68 9.906 1 19.79 ? CAI 33M 301 D 1 HETATM 23 C CAF 33M . . . B 2 17.673 2.137 11.186 1 21.68 ? CAF 33M 301 D 1 HETATM 24 C CAG 33M . . . B 2 16.594 1.946 12.107 1 20.94 ? CAG 33M 301 D 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #